Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|4712
Gene name
LocationContig_2389:1888..2636
Strand+
Gene length (bp)748
Transcript length (bp)696
Coding sequence length (bp)696
Protein length (aa) 232

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00250 Forkhead Forkhead domain 1.5E-08 197 227

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O43058|SEP1_SCHPO Forkhead protein sep1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sep1 PE=1 SV=1 184 230 4.0E-09

GO

GO Term Description Terminal node
GO:0043565 sequence-specific DNA binding Yes
GO:0003700 DNA-binding transcription factor activity Yes
GO:0006355 regulation of transcription, DNA-templated Yes
GO:0097159 organic cyclic compound binding No
GO:0060255 regulation of macromolecule metabolic process No
GO:0003677 DNA binding No
GO:0003674 molecular_function No
GO:0010556 regulation of macromolecule biosynthetic process No
GO:0009889 regulation of biosynthetic process No
GO:0051252 regulation of RNA metabolic process No
GO:0008150 biological_process No
GO:0005488 binding No
GO:0050794 regulation of cellular process No
GO:0019222 regulation of metabolic process No
GO:0003676 nucleic acid binding No
GO:0010468 regulation of gene expression No
GO:0031326 regulation of cellular biosynthetic process No
GO:0065007 biological regulation No
GO:0031323 regulation of cellular metabolic process No
GO:0140110 transcription regulator activity No
GO:2000112 regulation of cellular macromolecule biosynthetic process No
GO:0080090 regulation of primary metabolic process No
GO:0019219 regulation of nucleobase-containing compound metabolic process No
GO:1903506 regulation of nucleic acid-templated transcription No
GO:0050789 regulation of biological process No
GO:0051171 regulation of nitrogen compound metabolic process No
GO:2001141 regulation of RNA biosynthetic process No
GO:1901363 heterocyclic compound binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Forkhead

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|4712
MAKPTPFPGAAAHEPLHIFQDDFYDRQAPMTSHAPMPAVTKPARRPLSSSSANVVLNPPLSSSASFSPHKTRSSS
PRSPLRSSNASKLNMVSMAPPPGQPPATDSLQKRPPLSNFKAPARPDAAVHFGKENVHPQIFPAPPAINLSIEGY
YQKPGGKRALMDPAPIKDARPPKKPKPDETALPPHDSFPPIHDDGAKPPHSYAQLIGMAILRSPMRRLTLAQIYK
TASATT*
Coding >Hirsu2|4712
ATGGCCAAACCGACGCCCTTCCCCGGCGCCGCCGCCCACGAGCCCCTTCACATCTTCCAGGACGACTTCTACGAC
CGCCAGGCCCCCATGACCAGCCACGCGCCCATGCCCGCCGTCACCAAGCCCGCCCGCCGGCCCCTGAGCAGCTCC
AGCGCCAACGTCGTCCTCAACCCGCCCCTCTCCTCCAGCGCCAGCTTCTCGCCGCACAAGACGCGCTCCTCGTCG
CCCCGCTCGCCCCTGCGCTCCTCCAACGCCAGCAAGCTCAACATGGTCTCCATGGCGCCCCCGCCCGGCCAGCCG
CCCGCCACCGACTCGCTGCAGAAGCGGCCGCCGCTGTCCAACTTCAAGGCGCCCGCCCGCCCCGACGCCGCCGTC
CACTTCGGCAAGGAGAACGTCCACCCGCAAATCTTCCCCGCCCCGCCCGCCATCAACCTCTCCATCGAGGGCTAC
TACCAGAAGCCCGGCGGCAAGCGCGCCCTCATGGATCCCGCCCCCATCAAGGACGCCCGCCCGCCCAAGAAGCCC
AAGCCGGACGAGACGGCCCTGCCGCCCCACGACTCCTTCCCGCCCATCCACGACGACGGCGCCAAGCCGCCGCAC
AGCTACGCCCAGCTCATCGGCATGGCCATCCTCCGCTCCCCCATGCGCCGCCTCACCCTGGCCCAGATCTACAAA
ACAGCATCCGCCACAACCTGA
Transcript >Hirsu2|4712
ATGGCCAAACCGACGCCCTTCCCCGGCGCCGCCGCCCACGAGCCCCTTCACATCTTCCAGGACGACTTCTACGAC
CGCCAGGCCCCCATGACCAGCCACGCGCCCATGCCCGCCGTCACCAAGCCCGCCCGCCGGCCCCTGAGCAGCTCC
AGCGCCAACGTCGTCCTCAACCCGCCCCTCTCCTCCAGCGCCAGCTTCTCGCCGCACAAGACGCGCTCCTCGTCG
CCCCGCTCGCCCCTGCGCTCCTCCAACGCCAGCAAGCTCAACATGGTCTCCATGGCGCCCCCGCCCGGCCAGCCG
CCCGCCACCGACTCGCTGCAGAAGCGGCCGCCGCTGTCCAACTTCAAGGCGCCCGCCCGCCCCGACGCCGCCGTC
CACTTCGGCAAGGAGAACGTCCACCCGCAAATCTTCCCCGCCCCGCCCGCCATCAACCTCTCCATCGAGGGCTAC
TACCAGAAGCCCGGCGGCAAGCGCGCCCTCATGGATCCCGCCCCCATCAAGGACGCCCGCCCGCCCAAGAAGCCC
AAGCCGGACGAGACGGCCCTGCCGCCCCACGACTCCTTCCCGCCCATCCACGACGACGGCGCCAAGCCGCCGCAC
AGCTACGCCCAGCTCATCGGCATGGCCATCCTCCGCTCCCCCATGCGCCGCCTCACCCTGGCCCAGATCTACAAA
ACAGCATCCGCCACAACCTGA
Gene >Hirsu2|4712
ATGGCCAAACCGACGCCCTTCCCCGGCGCCGCCGCCCACGAGCCCCTTCACATCTTCCAGGACGACTTCTACGAC
CGCCAGGCCCCCATGACCAGCCACGCGCCCATGCCCGCCGTCACCAAGCCCGCCCGCCGGCCCCTGAGCAGCTCC
AGCGCCAACGTCGTCCTCAACCCGCCCCTCTCCTCCAGCGCCAGCTTCTCGCCGCACAAGACGCGCTCCTCGTCG
CCCCGCTCGCCCCTGCGCTCCTCCAACGCCAGCAAGCTCAACATGGTCTCCATGGCGCCCCCGCCCGGCCAGCCG
CCCGCCACCGACTCGCTGCAGAAGCGGCCGCCGCTGTCCAACTTCAAGGCGCCCGCCCGCCCCGACGCCGCCGTC
CACTTCGGCAAGGAGAACGTCCACCCGCAAATCTTCCCCGCCCCGCCCGCCATCAACCTCTCCATCGAGGGCTAC
TACCAGAAGCCCGGCGGCAAGCGCGCCCTCATGGATCCCGCCCCCATCAAGGACGCCCGCCCGCCCAAGAAGCCC
AAGCCGGACGAGACGGCCCTGCCGCCCCACGACTCCTTCCCGCCCATCCACGACGACGGCGCCAAGCCGCCGCAC
AGCTACGCCCAGCTCATCGGCATGGCCATCCTCCGCTCCCCCATGCGCCGCCTCACCCTGGCCCAGATCTACAAG
TGGATCAGCGACAACTACTCCTTCTACAATCCCAACGACGCCGGCTGGCAGAACAGCATCCGCCACAACCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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