Protein ID | Hirsu2|4709 |
Gene name | |
Location | Contig_2386:425..2329 |
Strand | + |
Gene length (bp) | 1904 |
Transcript length (bp) | 1767 |
Coding sequence length (bp) | 1767 |
Protein length (aa) | 589 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00096 | zf-C2H2 | Zinc finger, C2H2 type | 7.2E-03 | 549 | 573 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q59VM4|RPN4_CANAL | Transcriptional regulator RPN4 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RPN4 PE=1 SV=1 | 510 | 573 | 4.0E-17 |
sp|Q9Y815|RSV2_SCHPO | Zinc finger protein rsv2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rsv2 PE=3 SV=1 | 506 | 573 | 3.0E-15 |
sp|Q03465|RPN4_YEAST | Protein RPN4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPN4 PE=1 SV=1 | 512 | 583 | 8.0E-12 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm|Nucleus | Nuclear localization signal | 0.5054 | 0.8867 | 0.0276 | 0.0458 | 0.1206 | 0.0023 | 0.1098 | 0.0654 | 0.0136 | 0.0071 |
Transcription Factor Class (based on PFAM domains) |
---|
C2H2 zinc finger |
Orthofinder run ID | 4 |
Orthogroup | 6146 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|4709 MISSLPQGESPHNHRSRTHFHRQYPFPCESPENSFRLYTVVDNSTHFNHSPALLSLNPNDSVITRNGLRFGFAGT MHSDAWDSTTQLMPKPSRLSDQRESSTSSLGGTLDSTSPLSGNVNTCNPQVAISDSVFSGITELRSHEPTRPQMT YPLAVSSPHKKPRSDRSLLPAPELAPGRTRSPSRLASAASPTAGDSPATPSSTDNDHLGRRRTDFCNVPKLDRTM TDVYGDELYSPNFSITSTSPSQRQAASSPSNDVFHQRIHAANSQHLSAAKSPSSTVSRTRSSPFRTGSPFALSSN TSANVVHLNSSQRIRGQNQIRKESTLLPQQGAVLEPETPKTISPKDAILEFNDTDTESSFPLFPADVTHLDNDVI IAKSEGNEVGVQDTDGTNAVGFLQSQVFANMPVTQQFACASEHGLDHRTPPRLSSSASTSTTSGNSTPIIVTKPP VTGADGGTYTCTYHGCTQRFETPLQLQKHKREGHRQAQTVAGPRETGACMNMLNTQAGPHRCDRINPSTGKPCCT IFSRPYDLTRHEDTIHNARKQKVRCDLCTEEKTFSRADALTRHYRVCHPEVELPGKHKRRGGI* |
Coding | >Hirsu2|4709 ATGATCTCATCCCTACCTCAGGGCGAGTCACCTCACAACCATCGCTCTCGAACTCATTTTCATCGCCAGTATCCT TTTCCGTGCGAGTCTCCTGAGAACTCCTTTCGACTCTACACGGTAGTCGATAACTCGACGCATTTTAATCATTCA CCTGCTCTACTGTCACTCAACCCCAACGACAGCGTCATCACTCGCAACGGTCTACGATTCGGGTTCGCCGGGACA ATGCACTCGGATGCTTGGGACTCCACGACCCAGCTGATGCCCAAGCCTAGTCGGTTGTCGGATCAACGCGAATCT TCTACATCATCACTGGGAGGGACTTTAGACTCTACTTCGCCCTTGTCCGGGAACGTGAACACGTGCAATCCGCAG GTCGCGATCTCTGATTCTGTCTTCAGTGGCATAACCGAATTACGATCCCACGAACCTACGCGGCCTCAGATGACA TATCCTTTGGCTGTGTCGAGCCCGCACAAGAAGCCACGCAGCGACCGCAGTCTGTTGCCCGCTCCCGAACTCGCC CCGGGCCGCACTCGATCTCCATCTCGTCTGGCGTCCGCGGCGAGCCCAACTGCCGGCGATTCTCCTGCGACGCCG AGCAGTACTGATAATGACCATCTTGGCCGAAGAAGAACTGACTTCTGTAACGTCCCCAAGCTTGATCGCACAATG ACAGACGTCTACGGTGATGAGTTGTATAGCCCGAATTTCTCTATAACGTCGACATCGCCATCCCAGCGGCAGGCA GCATCATCGCCCAGCAACGATGTCTTTCACCAACGAATTCACGCCGCAAATAGTCAACATTTGAGCGCTGCGAAG TCACCATCGTCCACCGTCTCGAGGACTCGATCATCTCCATTTCGGACTGGCTCTCCCTTTGCTCTATCATCGAAT ACTTCCGCAAACGTTGTACACCTCAACTCGTCACAGCGGATAAGAGGGCAGAATCAAATTCGCAAGGAATCAACA TTACTACCACAGCAGGGAGCCGTCCTGGAACCGGAGACGCCCAAGACCATATCTCCAAAAGACGCCATACTTGAG TTCAACGACACGGACACAGAATCAAGTTTTCCTTTGTTCCCCGCGGACGTTACACACTTGGACAACGACGTAATA ATTGCGAAGTCTGAAGGCAATGAAGTGGGTGTCCAAGATACGGACGGCACAAATGCCGTAGGATTTCTCCAATCC CAGGTTTTTGCGAACATGCCAGTGACGCAGCAGTTCGCATGTGCATCTGAACACGGGTTGGATCATCGAACACCT CCACGCCTAAGCTCCTCTGCCTCCACCTCGACCACATCCGGCAATAGCACACCTATCATCGTTACAAAACCTCCA GTAACAGGTGCCGATGGTGGCACATATACTTGCACATATCATGGCTGCACTCAACGATTTGAAACTCCCTTACAA CTCCAAAAACATAAGAGAGAGGGACACAGGCAGGCACAGACAGTGGCAGGACCGCGCGAAACAGGTGCCTGTATG AATATGTTGAACACTCAAGCTGGACCCCATCGCTGCGACCGAATCAACCCAAGCACTGGCAAGCCATGCTGCACA ATCTTTTCTCGACCATACGACTTGACAAGACATGAAGACACTATCCACAATGCCCGCAAACAAAAGGTTCGGTGC GACCTATGTACCGAAGAGAAGACGTTCAGCCGCGCCGACGCATTGACGAGACATTACCGCGTGTGCCACCCTGAG GTGGAACTGCCAGGCAAGCACAAGAGGCGTGGGGGAATATGA |
Transcript | >Hirsu2|4709 ATGATCTCATCCCTACCTCAGGGCGAGTCACCTCACAACCATCGCTCTCGAACTCATTTTCATCGCCAGTATCCT TTTCCGTGCGAGTCTCCTGAGAACTCCTTTCGACTCTACACGGTAGTCGATAACTCGACGCATTTTAATCATTCA CCTGCTCTACTGTCACTCAACCCCAACGACAGCGTCATCACTCGCAACGGTCTACGATTCGGGTTCGCCGGGACA ATGCACTCGGATGCTTGGGACTCCACGACCCAGCTGATGCCCAAGCCTAGTCGGTTGTCGGATCAACGCGAATCT TCTACATCATCACTGGGAGGGACTTTAGACTCTACTTCGCCCTTGTCCGGGAACGTGAACACGTGCAATCCGCAG GTCGCGATCTCTGATTCTGTCTTCAGTGGCATAACCGAATTACGATCCCACGAACCTACGCGGCCTCAGATGACA TATCCTTTGGCTGTGTCGAGCCCGCACAAGAAGCCACGCAGCGACCGCAGTCTGTTGCCCGCTCCCGAACTCGCC CCGGGCCGCACTCGATCTCCATCTCGTCTGGCGTCCGCGGCGAGCCCAACTGCCGGCGATTCTCCTGCGACGCCG AGCAGTACTGATAATGACCATCTTGGCCGAAGAAGAACTGACTTCTGTAACGTCCCCAAGCTTGATCGCACAATG ACAGACGTCTACGGTGATGAGTTGTATAGCCCGAATTTCTCTATAACGTCGACATCGCCATCCCAGCGGCAGGCA GCATCATCGCCCAGCAACGATGTCTTTCACCAACGAATTCACGCCGCAAATAGTCAACATTTGAGCGCTGCGAAG TCACCATCGTCCACCGTCTCGAGGACTCGATCATCTCCATTTCGGACTGGCTCTCCCTTTGCTCTATCATCGAAT ACTTCCGCAAACGTTGTACACCTCAACTCGTCACAGCGGATAAGAGGGCAGAATCAAATTCGCAAGGAATCAACA TTACTACCACAGCAGGGAGCCGTCCTGGAACCGGAGACGCCCAAGACCATATCTCCAAAAGACGCCATACTTGAG TTCAACGACACGGACACAGAATCAAGTTTTCCTTTGTTCCCCGCGGACGTTACACACTTGGACAACGACGTAATA ATTGCGAAGTCTGAAGGCAATGAAGTGGGTGTCCAAGATACGGACGGCACAAATGCCGTAGGATTTCTCCAATCC CAGGTTTTTGCGAACATGCCAGTGACGCAGCAGTTCGCATGTGCATCTGAACACGGGTTGGATCATCGAACACCT CCACGCCTAAGCTCCTCTGCCTCCACCTCGACCACATCCGGCAATAGCACACCTATCATCGTTACAAAACCTCCA GTAACAGGTGCCGATGGTGGCACATATACTTGCACATATCATGGCTGCACTCAACGATTTGAAACTCCCTTACAA CTCCAAAAACATAAGAGAGAGGGACACAGGCAGGCACAGACAGTGGCAGGACCGCGCGAAACAGGTGCCTGTATG AATATGTTGAACACTCAAGCTGGACCCCATCGCTGCGACCGAATCAACCCAAGCACTGGCAAGCCATGCTGCACA ATCTTTTCTCGACCATACGACTTGACAAGACATGAAGACACTATCCACAATGCCCGCAAACAAAAGGTTCGGTGC GACCTATGTACCGAAGAGAAGACGTTCAGCCGCGCCGACGCATTGACGAGACATTACCGCGTGTGCCACCCTGAG GTGGAACTGCCAGGCAAGCACAAGAGGCGTGGGGGAATATGA |
Gene | >Hirsu2|4709 ATGATCTCATCCCTACCTCAGGGCGAGTCACCTCACAACCATCGCTCTCGAACTCATTTTCATCGCCAGTATCCT TTTCCGTGCGAGTCTCCTGAGAACTCCTTTCGACTCTACACGGTAGTCGATAACTCGACGCATTTTAATCATTCA CCTGCTCTACTGTCACTCAACCCCAACGACAGCGTCATCACTCGCAACGGTCTACGATTCGGGTTCGCCGGGACA ATGCACTCGGATGCTTGGGACTCCACGACCCAGCTGATGCCCAAGCCTAGTCGGTTGTCGGATCAACGCGAATCT TCTACATCATCACTGGGAGGGACTTTAGACTCTACTTCGCCCTTGTCCGGGAACGTGAACACGTGCAATCCGCAG GTCGCGATCTCTGATTCTGTCTTCAGTGGCATAACCGAATTACGATCCCACGAACCTACGCGGCCTCAGGTGAAT ACCCTACATCAGTCCGCCAGGCCCTTAAACGCCTATCCTTCATGCCGTAACCTTGACAATGTCATACCATCGAAG ATGACATATCCTTTGGCTGTGTCGAGCCCGCACAAGAAGCCACGCAGCGACCGCAGTCTGTTGCCCGCTCCCGAA CTCGCCCCGGGCCGCACTCGATCTCCATCTCGTCTGGCGTCCGCGGCGAGCCCAACTGCCGGCGATTCTCCTGCG ACGCCGAGCAGTACTGATAATGACCATCTTGGCCGAAGAAGAACTGGTACGCCCTTCTCCTTCGTGAATGAAAAC GTTCGACAGCGCTGATGGTAATTTCAGACTTCTGTAACGTCCCCAAGCTTGATCGCACAATGACAGACGTCTACG GTGATGAGTTGTATAGCCCGAATTTCTCTATAACGTCGACATCGCCATCCCAGCGGCAGGCAGCATCATCGCCCA GCAACGATGTCTTTCACCAACGAATTCACGCCGCAAATAGTCAACATTTGAGCGCTGCGAAGTCACCATCGTCCA CCGTCTCGAGGACTCGATCATCTCCATTTCGGACTGGCTCTCCCTTTGCTCTATCATCGAATACTTCCGCAAACG TTGTACACCTCAACTCGTCACAGCGGATAAGAGGGCAGAATCAAATTCGCAAGGAATCAACATTACTACCACAGC AGGGAGCCGTCCTGGAACCGGAGACGCCCAAGACCATATCTCCAAAAGACGCCATACTTGAGTTCAACGACACGG ACACAGAATCAAGTTTTCCTTTGTTCCCCGCGGACGTTACACACTTGGACAACGACGTAATAATTGCGAAGTCTG AAGGCAATGAAGTGGGTGTCCAAGATACGGACGGCACAAATGCCGTAGGATTTCTCCAATCCCAGGTTTTTGCGA ACATGCCAGTGACGCAGCAGTTCGCATGTGCATCTGAACACGGGTTGGATCATCGAACACCTCCACGCCTAAGCT CCTCTGCCTCCACCTCGACCACATCCGGCAATAGCACACCTATCATCGTTACAAAACCTCCAGTAACAGGTGCCG ATGGTGGCACATATACTTGCACATATCATGGCTGCACTCAACGATTTGAAACTCCCTTACAACTCCAAAAACATA AGAGAGAGGGACACAGGCAGGCACAGACAGTGGCAGGACCGCGCGAAACAGGTGCCTGTATGAATATGTTGAACA CTCAAGCTGGACCCCATCGCTGCGACCGAATCAACCCAAGCACTGGCAAGCCATGCTGCACAATCTTTTCTCGAC CATACGACTTGACAAGACATGAAGACACTATCCACAATGCCCGCAAACAAAAGGTTCGGTGCGACCTATGTACCG AAGAGAAGACGTTCAGCCGCGCCGACGCATTGACGAGACATTACCGCGTGTGCCACCCTGAGGTGGAACTGCCAG GCAAGCACAAGAGGCGTGGGGGAATATGA |