© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|465 |
| Gene name | |
| Location | Contig_1093:1470..1943 |
| Strand | - |
| Gene length (bp) | 473 |
| Transcript length (bp) | 285 |
| Coding sequence length (bp) | 285 |
| Protein length (aa) | 95 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.584 | 0.4751 | 0.4381 | 0.1247 | 0.1543 | 0.1661 | 0.2228 | 0.168 | 0.148 | 0.031 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 29 | 19 |
| Orthofinder run ID | 4 |
| Orthogroup | 9681 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|465 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|465 MPMPAADCTAIISIAVAVALCAPARLRFSCQPTQIANDKRRPVVPTPPPPLPLALPPSLSSSPFPSSLPVRLLAL PCPQRRRDRFRRSRGMSWS* |
| Coding | >Hirsu2|465 ATGCCGATGCCCGCCGCAGACTGTACAGCAATTATCTCCATCGCGGTGGCTGTGGCTCTCTGCGCGCCCGCTCGC CTTCGTTTTTCCTGCCAACCGACGCAAATTGCCAACGACAAACGAAGGCCCGTCGTCCCCACGCCGCCGCCTCCT CTCCCTCTCGCGCTGCCTCCCTCTCTCTCTTCTTCTCCTTTCCCCTCGTCTCTGCCCGTCCGCCTGCTCGCTCTT CCATGTCCGCAGCGCCGCCGCGATCGCTTCCGCCGTAGCCGCGGCATGTCTTGGTCGTAG |
| Transcript | >Hirsu2|465 ATGCCGATGCCCGCCGCAGACTGTACAGCAATTATCTCCATCGCGGTGGCTGTGGCTCTCTGCGCGCCCGCTCGC CTTCGTTTTTCCTGCCAACCGACGCAAATTGCCAACGACAAACGAAGGCCCGTCGTCCCCACGCCGCCGCCTCCT CTCCCTCTCGCGCTGCCTCCCTCTCTCTCTTCTTCTCCTTTCCCCTCGTCTCTGCCCGTCCGCCTGCTCGCTCTT CCATGTCCGCAGCGCCGCCGCGATCGCTTCCGCCGTAGCCGCGGCATGTCTTGGTCGTAG |
| Gene | >Hirsu2|465 ATGCCGATGCCCGCCGCAGACTGTACAGGTACGCCCTTCACACGCCATAATAGGGGCCCACCCTGCCGGCGCGCA CGTTGATGTGCCGCCCGCTGCCTAGGCCATATCATCGTGAGCGGCCGAGGCCGGCACCCACTGAATGACCCTTTT TTTTCCTCCCTCCTACCCGGCTCCATAACACACAATTCTGCTACGTATTATTATTGATCTTGCTAGCAATTATCT CCATCGCGGTGGCTGTGGCTCTCTGCGCGCCCGCTCGCCTTCGTTTTTCCTGCCAACCGACGCAAATTGCCAACG ACAAACGAAGGCCCGTCGTCCCCACGCCGCCGCCTCCTCTCCCTCTCGCGCTGCCTCCCTCTCTCTCTTCTTCTC CTTTCCCCTCGTCTCTGCCCGTCCGCCTGCTCGCTCTTCCATGTCCGCAGCGCCGCCGCGATCGCTTCCGCCGTA GCCGCGGCATGTCTTGGTCGTAG |