Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|465
Gene name
LocationContig_1093:1470..1943
Strand-
Gene length (bp)473
Transcript length (bp)285
Coding sequence length (bp)285
Protein length (aa) 95

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm 0.584 0.4751 0.4381 0.1247 0.1543 0.1661 0.2228 0.168 0.148 0.031

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 10 29 19

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup9681
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|465 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|465
MPMPAADCTAIISIAVAVALCAPARLRFSCQPTQIANDKRRPVVPTPPPPLPLALPPSLSSSPFPSSLPVRLLAL
PCPQRRRDRFRRSRGMSWS*
Coding >Hirsu2|465
ATGCCGATGCCCGCCGCAGACTGTACAGCAATTATCTCCATCGCGGTGGCTGTGGCTCTCTGCGCGCCCGCTCGC
CTTCGTTTTTCCTGCCAACCGACGCAAATTGCCAACGACAAACGAAGGCCCGTCGTCCCCACGCCGCCGCCTCCT
CTCCCTCTCGCGCTGCCTCCCTCTCTCTCTTCTTCTCCTTTCCCCTCGTCTCTGCCCGTCCGCCTGCTCGCTCTT
CCATGTCCGCAGCGCCGCCGCGATCGCTTCCGCCGTAGCCGCGGCATGTCTTGGTCGTAG
Transcript >Hirsu2|465
ATGCCGATGCCCGCCGCAGACTGTACAGCAATTATCTCCATCGCGGTGGCTGTGGCTCTCTGCGCGCCCGCTCGC
CTTCGTTTTTCCTGCCAACCGACGCAAATTGCCAACGACAAACGAAGGCCCGTCGTCCCCACGCCGCCGCCTCCT
CTCCCTCTCGCGCTGCCTCCCTCTCTCTCTTCTTCTCCTTTCCCCTCGTCTCTGCCCGTCCGCCTGCTCGCTCTT
CCATGTCCGCAGCGCCGCCGCGATCGCTTCCGCCGTAGCCGCGGCATGTCTTGGTCGTAG
Gene >Hirsu2|465
ATGCCGATGCCCGCCGCAGACTGTACAGGTACGCCCTTCACACGCCATAATAGGGGCCCACCCTGCCGGCGCGCA
CGTTGATGTGCCGCCCGCTGCCTAGGCCATATCATCGTGAGCGGCCGAGGCCGGCACCCACTGAATGACCCTTTT
TTTTCCTCCCTCCTACCCGGCTCCATAACACACAATTCTGCTACGTATTATTATTGATCTTGCTAGCAATTATCT
CCATCGCGGTGGCTGTGGCTCTCTGCGCGCCCGCTCGCCTTCGTTTTTCCTGCCAACCGACGCAAATTGCCAACG
ACAAACGAAGGCCCGTCGTCCCCACGCCGCCGCCTCCTCTCCCTCTCGCGCTGCCTCCCTCTCTCTCTTCTTCTC
CTTTCCCCTCGTCTCTGCCCGTCCGCCTGCTCGCTCTTCCATGTCCGCAGCGCCGCCGCGATCGCTTCCGCCGTA
GCCGCGGCATGTCTTGGTCGTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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