© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|4625 |
| Gene name | |
| Location | Contig_234:23423..25366 |
| Strand | - |
| Gene length (bp) | 1943 |
| Transcript length (bp) | 1764 |
| Coding sequence length (bp) | 1764 |
| Protein length (aa) | 588 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.4E-17 | 129 | 393 |
| PF07690 | MFS_1 | Major Facilitator Superfamily | 2.5E-10 | 429 | 557 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P46996|YJQ3_YEAST | Uncharacterized membrane protein YJL163C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YJL163C PE=1 SV=1 | 143 | 547 | 9.0E-23 |
| sp|O13714|YDZ7_SCHPO | Uncharacterized membrane protein C14C4.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC14C4.07 PE=1 SV=1 | 77 | 567 | 2.0E-18 |
| sp|P02982|TCR1_ECOLX | Tetracycline resistance protein, class A OS=Escherichia coli GN=tetA PE=3 SV=2 | 150 | 538 | 2.0E-12 |
| sp|Q7ZWG6|PCFT_DANRE | Proton-coupled folate transporter OS=Danio rerio GN=slc46a1 PE=2 SV=1 | 126 | 519 | 1.0E-06 |
| sp|P02980|TCR2_ECOLX | Tetracycline resistance protein, class B OS=Escherichia coli GN=tetA PE=1 SV=1 | 129 | 252 | 4.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0009987 | cellular process | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0003674 | molecular_function | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 65 | 84 | 19 |
| 2 | 131 | 153 | 22 |
| 3 | 165 | 184 | 19 |
| 4 | 194 | 216 | 22 |
| 5 | 229 | 251 | 22 |
| 6 | 261 | 283 | 22 |
| 7 | 345 | 367 | 22 |
| 8 | 382 | 404 | 22 |
| 9 | 434 | 453 | 19 |
| 10 | 458 | 480 | 22 |
| 11 | 493 | 515 | 22 |
| 12 | 525 | 544 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4625 MGGAHPARPRPAHPEPEVAETDRLLERGPRRRPGHEPGDDADSIGCRWTGFQDFALLPWWRKPSVLWLLAPFTLF TLAFGGIIVPKLNLILDLVCQRYFSDESRGGVHGGRPVVLGGDNPQCRIPEVHKDVATFMLVINFVTGGLSAVVA PKLGHLSDRYGRRRLLALASCGGLLAELITILAAKFPQAVDYRWMVLGAVFDGMTGSFTAGSLLSQSYTSDCTPP SKRAVSMGYIQACLFVGLAFGPLLAGYFVKWTGSLVSIFYVALGCHTFFVLFVGLVIPESLSAKRQAAARDKWQK EKEARALHVGSWLSTLLSSNPLAPLQILWPTGPGTSTRLRLNLVALATCDAIIFGAAFAVGPVIMLYAEYMFNWG NFETSRFISALSMARVVVLMGLFPAINYFGRVRPAARRHARLGTTPVERNFGADRLDVWIVRLALVWEVLGCLGY ALGRSQELFILCGMVTALGGLGSATIQAAVTKQVPTGRVGQILGAVGMMHALARIVGPVVFNGIYAATVATFPQA VFLALCGLFVVALVVSLVVKPYVHWEETHDDEGEEEPLNRTQQLFDTTADTLPVDEGQVRVQ* |
| Coding | >Hirsu2|4625 ATGGGCGGCGCGCACCCGGCAAGGCCGCGGCCTGCCCACCCCGAGCCCGAGGTGGCGGAAACGGACCGTCTGCTC GAGCGCGGCCCCCGGCGACGACCGGGCCACGAGCCCGGCGACGATGCCGACTCCATCGGCTGCCGCTGGACCGGT TTCCAGGACTTTGCCCTCCTGCCTTGGTGGCGCAAGCCTTCGGTCCTGTGGCTGCTCGCGCCATTCACGCTCTTC ACCCTAGCCTTTGGCGGCATCATAGTCCCCAAGCTTAATCTGATCCTGGACCTCGTCTGCCAGCGCTACTTCTCC GACGAGAGCCGCGGCGGCGTCCATGGCGGCCGCCCCGTCGTCCTCGGCGGCGACAACCCGCAGTGCCGGATCCCC GAGGTGCACAAGGACGTGGCGACCTTCATGCTCGTCATCAACTTCGTCACGGGCGGCCTCAGTGCCGTCGTCGCG CCCAAGCTGGGCCACCTGTCGGACCGCTACGGCCGGCGGCGGCTGCTGGCCCTGGCCTCGTGCGGCGGCCTCCTG GCCGAGCTCATCACCATCCTGGCCGCCAAGTTCCCCCAGGCCGTCGACTACCGCTGGATGGTGCTGGGGGCCGTC TTCGACGGCATGACCGGCTCCTTCACCGCCGGCAGCCTGCTCAGCCAGTCGTACACGAGCGACTGCACGCCGCCC TCCAAGCGGGCCGTGTCCATGGGCTACATCCAGGCCTGCCTGTTCGTCGGCCTCGCCTTCGGGCCGCTGCTGGCC GGCTACTTCGTCAAGTGGACCGGCAGCCTCGTGTCCATCTTCTACGTCGCCCTCGGCTGCCACACCTTCTTCGTC CTCTTCGTCGGCCTCGTCATCCCCGAGTCGCTGTCGGCCAAGAGGCAGGCCGCGGCGCGGGACAAGTGGCAGAAG GAGAAGGAGGCGCGCGCCCTGCACGTCGGCTCCTGGCTGTCGACGCTGCTCTCCTCGAACCCCCTGGCGCCGCTG CAGATCCTGTGGCCGACGGGGCCGGGGACGTCGACGCGGCTGCGTCTCAACCTGGTGGCGCTGGCGACGTGCGAC GCCATCATCTTCGGGGCCGCCTTCGCCGTCGGGCCCGTCATCATGCTGTACGCCGAGTACATGTTCAACTGGGGC AACTTTGAGACGTCTCGCTTCATCTCGGCCCTGTCCATGGCGCGCGTCGTCGTCCTGATGGGCCTCTTCCCCGCC ATCAACTACTTTGGCCGCGTCCGGCCGGCGGCTCGGCGGCACGCGCGGCTGGGCACGACGCCCGTGGAGCGCAAC TTCGGGGCGGACCGGCTCGACGTCTGGATCGTCCGGCTCGCGCTGGTCTGGGAGGTGCTGGGATGCCTGGGCTAC GCGCTCGGGCGGTCGCAGGAGCTGTTCATCCTCTGCGGCATGGTGACGGCGCTCGGCGGACTCGGGAGCGCCACT ATCCAGGCCGCGGTGACGAAGCAGGTGCCTACGGGACGCGTGGGCCAGATCCTCGGTGCCGTCGGCATGATGCAC GCGCTGGCCCGGATCGTCGGGCCCGTCGTCTTCAACGGAATCTACGCCGCCACCGTCGCCACCTTTCCGCAGGCC GTCTTCCTCGCCCTCTGCGGCCTCTTTGTCGTCGCTCTCGTCGTCAGCCTCGTCGTCAAGCCATACGTCCACTGG GAGGAGACCCACGACGACGAGGGGGAGGAGGAGCCGCTGAACCGGACGCAGCAGCTGTTCGACACGACCGCGGAC ACGCTGCCCGTCGACGAGGGTCAAGTCCGCGTCCAATAG |
| Transcript | >Hirsu2|4625 ATGGGCGGCGCGCACCCGGCAAGGCCGCGGCCTGCCCACCCCGAGCCCGAGGTGGCGGAAACGGACCGTCTGCTC GAGCGCGGCCCCCGGCGACGACCGGGCCACGAGCCCGGCGACGATGCCGACTCCATCGGCTGCCGCTGGACCGGT TTCCAGGACTTTGCCCTCCTGCCTTGGTGGCGCAAGCCTTCGGTCCTGTGGCTGCTCGCGCCATTCACGCTCTTC ACCCTAGCCTTTGGCGGCATCATAGTCCCCAAGCTTAATCTGATCCTGGACCTCGTCTGCCAGCGCTACTTCTCC GACGAGAGCCGCGGCGGCGTCCATGGCGGCCGCCCCGTCGTCCTCGGCGGCGACAACCCGCAGTGCCGGATCCCC GAGGTGCACAAGGACGTGGCGACCTTCATGCTCGTCATCAACTTCGTCACGGGCGGCCTCAGTGCCGTCGTCGCG CCCAAGCTGGGCCACCTGTCGGACCGCTACGGCCGGCGGCGGCTGCTGGCCCTGGCCTCGTGCGGCGGCCTCCTG GCCGAGCTCATCACCATCCTGGCCGCCAAGTTCCCCCAGGCCGTCGACTACCGCTGGATGGTGCTGGGGGCCGTC TTCGACGGCATGACCGGCTCCTTCACCGCCGGCAGCCTGCTCAGCCAGTCGTACACGAGCGACTGCACGCCGCCC TCCAAGCGGGCCGTGTCCATGGGCTACATCCAGGCCTGCCTGTTCGTCGGCCTCGCCTTCGGGCCGCTGCTGGCC GGCTACTTCGTCAAGTGGACCGGCAGCCTCGTGTCCATCTTCTACGTCGCCCTCGGCTGCCACACCTTCTTCGTC CTCTTCGTCGGCCTCGTCATCCCCGAGTCGCTGTCGGCCAAGAGGCAGGCCGCGGCGCGGGACAAGTGGCAGAAG GAGAAGGAGGCGCGCGCCCTGCACGTCGGCTCCTGGCTGTCGACGCTGCTCTCCTCGAACCCCCTGGCGCCGCTG CAGATCCTGTGGCCGACGGGGCCGGGGACGTCGACGCGGCTGCGTCTCAACCTGGTGGCGCTGGCGACGTGCGAC GCCATCATCTTCGGGGCCGCCTTCGCCGTCGGGCCCGTCATCATGCTGTACGCCGAGTACATGTTCAACTGGGGC AACTTTGAGACGTCTCGCTTCATCTCGGCCCTGTCCATGGCGCGCGTCGTCGTCCTGATGGGCCTCTTCCCCGCC ATCAACTACTTTGGCCGCGTCCGGCCGGCGGCTCGGCGGCACGCGCGGCTGGGCACGACGCCCGTGGAGCGCAAC TTCGGGGCGGACCGGCTCGACGTCTGGATCGTCCGGCTCGCGCTGGTCTGGGAGGTGCTGGGATGCCTGGGCTAC GCGCTCGGGCGGTCGCAGGAGCTGTTCATCCTCTGCGGCATGGTGACGGCGCTCGGCGGACTCGGGAGCGCCACT ATCCAGGCCGCGGTGACGAAGCAGGTGCCTACGGGACGCGTGGGCCAGATCCTCGGTGCCGTCGGCATGATGCAC GCGCTGGCCCGGATCGTCGGGCCCGTCGTCTTCAACGGAATCTACGCCGCCACCGTCGCCACCTTTCCGCAGGCC GTCTTCCTCGCCCTCTGCGGCCTCTTTGTCGTCGCTCTCGTCGTCAGCCTCGTCGTCAAGCCATACGTCCACTGG GAGGAGACCCACGACGACGAGGGGGAGGAGGAGCCGCTGAACCGGACGCAGCAGCTGTTCGACACGACCGCGGAC ACGCTGCCCGTCGACGAGGGTCAAGTCCGCGTCCAATAG |
| Gene | >Hirsu2|4625 ATGGGCGGCGCGCACCCGGCAAGGCCGCGGCCTGCCCACCCCGAGCCCGAGGTGGCGGAAACGGACCGTCTGCTC GAGCGCGGCCCCCGGCGACGACCGGGCCACGAGCCCGGCGACGATGCCGACTCCATCGGCTGCCGCTGGACCGGT TTCCAGGACTTTGCCCTCCTGCCTTGGTGGCGCAAGCCTTCGGTATGCGGTCCATCATTGGTCGAACGGTAACCG GGAGGAAGAAACAAGACTAAAACGCTCGCGCAGGTCCTGTGGCTGCTCGCGCCATTCACGCTCTTCACCCTAGCC TTTGGCGGCATCATAGTCCCCAAGCTTAATCTGTAAAGCACCGCCCCCTCCCGGCGCGTGGGAGCATCGCTGACG GCGGCGGCCCAGGATCCTGGACCTCGTCTGCCAGCGCTACTTCTCCGACGAGAGCCGCGGCGGCGTCCATGGCGG CCGCCCCGTCGTCCTCGGCGGCGACAACCCGCAGTGCCGGATCCCCGAGGTGCACAAGGACGTGGCGACCTTCAT GCTCGTCATCAACTTCGTCACGGGCGGCCTCAGTGCCGTCGTCGCGCCCAAGCTGGGCCACCTGTCGGACCGCTA CGGCCGGCGGCGGCTGCTGGCCCTGGCCTCGTGCGGCGGCCTCCTGGCCGAGCTCATCACCATCCTGGCCGCCAA GTTCCCCCAGGCCGTCGACTACCGCTGGATGGTGCTGGGGGCCGTCTTCGACGGCATGACCGGCTCCTTCACCGC CGGCAGCCTGCTCAGCCAGTCGTACACGAGCGACTGCACGCCGCCCTCCAAGCGGGCCGTGTCCATGGGCTACAT CCAGGCCTGCCTGTTCGTCGGCCTCGCCTTCGGGCCGCTGCTGGCCGGCTACTTCGTCAAGTGGACCGGCAGCCT CGTGTCCATCTTCTACGTCGCCCTCGGCTGCCACACCTTCTTCGTCCTCTTCGTCGGCCTCGTCATCCCCGAGTC GCTGTCGGCCAAGAGGCAGGCCGCGGCGCGGGACAAGTGGCAGAAGGAGAAGGAGGCGCGCGCCCTGCACGTCGG CTCCTGGCTGTCGACGCTGCTCTCCTCGAACCCCCTGGCGCCGCTGCAGATCCTGTGGCCGACGGGGCCGGGGAC GTCGACGCGGCTGCGTCTCAACCTGGTGGCGCTGGCGACGTGCGACGCCATCATCTTCGGGGCCGCCTTCGCCGT CGGGCCCGTCATCATGCTGTACGCCGAGTACATGTTCAACTGGGGCAACTTTGAGACGTCTCGCTTCATCTCGGC CCTGTCCATGGCGCGCGTCGTCGTCCTGATGGGCCTCTTCCCCGCCATCAACTACTTTGGCCGCGTCCGGCCGGC GGCTCGGCGGCACGCGCGGCTGGGCACGACGCCCGTGGAGCGCAACTTCGGGGCGGACCGGCTCGACGTCTGGAT CGTCCGGCTCGCGCTGGTCTGGGAGGTGCTGGGATGCCTGGGCTACGCGCTCGGGCGGTCGCAGGAGCTGTTCAT CCTCTGCGGCATGGTGACGGCGCTCGGCGGACTCGGGAGCGCCACTATCCAGGCCGCGGTGACGAAGCAGGTGCC TACGGGACGCGTGGGCCAGATCCTCGGTGCCGTCGGCATGATGCACGCGCTGGCCCGGATCGTCGGGCCCGTCGT CTTCAACGGAATCTACGCCGCCACCGTCGCCACCTTTCCGCAGGCCGTCTTCCTCGCCCTCTGCGGCCTCTTTGT CGTCGCTCTCGTCGTCAGCCTCGTCGTCAAGCCATACGGTGAGTCCCGCCCGAGCGCGCCCCCGCTTGCCCGAGC TGCTTCTGACGCGCGCGACAGTCCACTGGGAGGAGACCCACGACGACGAGGGGGAGGAGGAGCCGCTGAACCGGA CGCAGCAGCTGTTCGACACGACCGCGGACACGCTGCCCGTCGACGAGGGTCAAGTCCGCGTCCAATAG |