Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|4612
Gene name
LocationContig_2338:95..878
Strand+
Gene length (bp)783
Transcript length (bp)672
Coding sequence length (bp)672
Protein length (aa) 224

Overview

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PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q04991|FMP42_YEAST Protein FMP42 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FMP42 PE=1 SV=1 1 170 7.0E-33

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Lysosome/Vacuole Transmembrane domain 0.0823 0.0762 0.0503 0.4366 0.0791 0.0101 0.0554 0.7861 0.1854 0.0151

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 5 27 22
2 42 64 22
3 67 89 22
4 94 116 22
5 129 149 20
6 164 186 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup7037
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|2382
Ophiocordyceps australis map64 (Brazil) OphauB2|3832
Ophiocordyceps subramaniannii Hirsu2|4612 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|4612
MRTPWFLLLLLLTALQMLRMNHFIATVRAQYAYLLASDRDAAAINSFFDAALPVSGVAATPLVAAVLNSFSVAAV
LAILTACIAVNGLLNCLPFLWAGFATVLEFVTLRPFYYSAVSHTATQMFGFETFGLIYGTIICAAGLVNAFQSAL
DSLMYGPLGGNPTPINMALAGAGTVVGAFFAAFVAIKSRRWRESSQQGSLSERLSLIQDDDREYGTSIIQRIQ*
Coding >Hirsu2|4612
ATGCGCACGCCCTGGTTCCTGCTGCTGCTGCTGCTGACGGCGCTGCAGATGCTGCGGATGAACCACTTCATCGCC
ACCGTCCGCGCCCAGTACGCCTACCTGCTGGCCTCGGACCGCGACGCCGCCGCCATCAACAGCTTCTTCGACGCC
GCCCTGCCCGTCAGCGGCGTCGCCGCCACGCCCCTCGTCGCCGCCGTCCTCAACAGCTTCAGCGTCGCCGCCGTG
CTCGCCATCCTCACCGCCTGCATCGCCGTCAACGGCCTGCTCAACTGCCTGCCCTTCCTGTGGGCCGGCTTCGCC
ACCGTCCTCGAGTTCGTCACCCTGCGCCCCTTTTACTACTCGGCCGTCTCACACACGGCCACCCAGATGTTCGGC
TTCGAGACCTTCGGCCTCATCTACGGCACCATCATCTGTGCCGCCGGCCTCGTCAACGCCTTTCAGTCCGCGCTC
GACTCCCTCATGTATGGCCCGCTCGGCGGGAACCCGACCCCGATCAACATGGCCCTGGCCGGCGCCGGCACCGTC
GTCGGCGCCTTCTTCGCCGCCTTCGTCGCCATCAAGAGCCGCCGCTGGCGGGAATCGTCCCAGCAGGGCTCCCTG
AGCGAGCGTCTGAGCCTCATCCAGGACGACGACCGCGAGTACGGCACCTCCATCATCCAGCGCATACAGTGA
Transcript >Hirsu2|4612
ATGCGCACGCCCTGGTTCCTGCTGCTGCTGCTGCTGACGGCGCTGCAGATGCTGCGGATGAACCACTTCATCGCC
ACCGTCCGCGCCCAGTACGCCTACCTGCTGGCCTCGGACCGCGACGCCGCCGCCATCAACAGCTTCTTCGACGCC
GCCCTGCCCGTCAGCGGCGTCGCCGCCACGCCCCTCGTCGCCGCCGTCCTCAACAGCTTCAGCGTCGCCGCCGTG
CTCGCCATCCTCACCGCCTGCATCGCCGTCAACGGCCTGCTCAACTGCCTGCCCTTCCTGTGGGCCGGCTTCGCC
ACCGTCCTCGAGTTCGTCACCCTGCGCCCCTTTTACTACTCGGCCGTCTCACACACGGCCACCCAGATGTTCGGC
TTCGAGACCTTCGGCCTCATCTACGGCACCATCATCTGTGCCGCCGGCCTCGTCAACGCCTTTCAGTCCGCGCTC
GACTCCCTCATGTATGGCCCGCTCGGCGGGAACCCGACCCCGATCAACATGGCCCTGGCCGGCGCCGGCACCGTC
GTCGGCGCCTTCTTCGCCGCCTTCGTCGCCATCAAGAGCCGCCGCTGGCGGGAATCGTCCCAGCAGGGCTCCCTG
AGCGAGCGTCTGAGCCTCATCCAGGACGACGACCGCGAGTACGGCACCTCCATCATCCAGCGCATACAGTGA
Gene >Hirsu2|4612
ATGCGCACGCCCTGGTTCCTGCTGCTGCTGCTGCTGACGGCGCTGCAGATGCTGCGGATGAACCACTTCATCGCC
ACCGTCCGCGCCCAGTACGCCTACCTGCTGGCCTCGGACCGCGACGCCGCCGCCATCAACAGCTTCTTCGACGCC
GCCCTGCCCGTCAGCGGCGTCGCCGCCACGCCCCTCGTCGCCGCCGTCCTCAACAGCTTCAGCGTCGCCGCCGTG
CTCGCCATCCTCACCGCCTGCATCGCCGTCAACGGCCTGCTCAACTGCCTGCCCTTCCTGTGGGCCGGCTTCGCC
ACCGTCCTCGAGTTCGTCACCCTGCGCCCCTTTTACTACTCGGCCGTCTCGTGAGTTCTTCTCTCCTCTTCACCA
AGACGGGAGGAAAAAAAAAAAGTGAAACCGTCCATGGATCGGTATGTTTCTGACACGTTTTGCTGCTTGCGCTCC
CCCGGCCCAAGACACACGGCCACCCAGATGTTCGGCTTCGAGACCTTCGGCCTCATCTACGGCACCATCATCTGT
GCCGCCGGCCTCGTCAACGCCTTTCAGTCCGCGCTCGACTCCCTCATGTATGGCCCGCTCGGCGGGAACCCGACC
CCGATCAACATGGCCCTGGCCGGCGCCGGCACCGTCGTCGGCGCCTTCTTCGCCGCCTTCGTCGCCATCAAGAGC
CGCCGCTGGCGGGAATCGTCCCAGCAGGGCTCCCTGAGCGAGCGTCTGAGCCTCATCCAGGACGACGACCGCGAG
TACGGCACCTCCATCATCCAGCGCATACAGTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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