© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|4603 |
| Gene name | |
| Location | Contig_233:19840..20716 |
| Strand | - |
| Gene length (bp) | 876 |
| Transcript length (bp) | 876 |
| Coding sequence length (bp) | 876 |
| Protein length (aa) | 292 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1422 | 0.0975 | 0.8619 | 0.1591 | 0.0713 | 0.0188 | 0.3848 | 0.2773 | 0.166 | 0.0009 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 20 | 0.999726 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 23 | 18 |
| Orthofinder run ID | 4 |
| Orthogroup | 9664 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|4603 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4603 MATVSYMYLLLSLFAATVWAGGYQGCLERVMLFQAYEIDALNPPSDQTVGFRCTRFNTQTKKCSGHWEPCKKRNN AAGRCDFDEMMVHLGRAPRQTGWARYNAATGRLDAEATAKNCYRIFAAQGGNAKVPNFQPYKALKGATGEYNDYI MQLSKVVNDAWWKKKRDNNKHQWAEFDSTVRLINIARTGDHGKYLIPAVEQGLGHIMNIKRKSLGNHPVTGEGWE TVDWKETAAAAKKAGVADYHTHFTHVLNDLYRGTQTDNNHKSFRDHHQVIRSYKRVEDRSRSCRKH* |
| Coding | >Hirsu2|4603 ATGGCGACCGTCTCCTACATGTACCTGCTCCTCTCCCTCTTTGCGGCGACGGTCTGGGCCGGGGGATACCAAGGA TGCCTGGAGCGCGTCATGCTCTTCCAGGCCTACGAGATTGACGCCCTTAACCCGCCAAGCGACCAGACCGTGGGC TTTCGGTGCACCAGATTTAATACGCAAACCAAAAAATGCTCGGGCCACTGGGAACCGTGCAAGAAGAGAAACAAC GCAGCCGGCAGATGCGATTTCGACGAAATGATGGTTCATTTGGGAAGAGCCCCGAGGCAGACTGGCTGGGCCCGT TACAATGCAGCAACGGGGAGACTCGACGCCGAGGCTACGGCCAAGAACTGCTATCGTATTTTCGCGGCTCAAGGC GGAAACGCCAAGGTGCCCAACTTTCAGCCATACAAAGCCTTGAAGGGCGCGACCGGAGAGTACAATGACTATATC ATGCAGCTCAGTAAAGTGGTCAACGATGCGTGGTGGAAGAAGAAGCGGGACAACAATAAGCATCAATGGGCGGAG TTCGACAGCACCGTGCGCCTGATCAACATCGCGCGGACCGGGGACCACGGCAAGTACCTCATCCCTGCGGTAGAA CAAGGCCTTGGACACATCATGAATATCAAGCGAAAGTCGCTGGGCAATCATCCCGTTACGGGAGAAGGGTGGGAA ACGGTCGACTGGAAAGAAACGGCCGCGGCTGCTAAGAAAGCGGGCGTGGCAGACTATCATACGCACTTCACGCAC GTTCTAAATGATTTATATAGAGGGACACAGACGGACAATAACCATAAATCATTCAGGGATCACCACCAGGTGATA AGGTCGTACAAGCGGGTGGAAGATCGGTCTAGGTCATGCCGCAAGCATTGA |
| Transcript | >Hirsu2|4603 ATGGCGACCGTCTCCTACATGTACCTGCTCCTCTCCCTCTTTGCGGCGACGGTCTGGGCCGGGGGATACCAAGGA TGCCTGGAGCGCGTCATGCTCTTCCAGGCCTACGAGATTGACGCCCTTAACCCGCCAAGCGACCAGACCGTGGGC TTTCGGTGCACCAGATTTAATACGCAAACCAAAAAATGCTCGGGCCACTGGGAACCGTGCAAGAAGAGAAACAAC GCAGCCGGCAGATGCGATTTCGACGAAATGATGGTTCATTTGGGAAGAGCCCCGAGGCAGACTGGCTGGGCCCGT TACAATGCAGCAACGGGGAGACTCGACGCCGAGGCTACGGCCAAGAACTGCTATCGTATTTTCGCGGCTCAAGGC GGAAACGCCAAGGTGCCCAACTTTCAGCCATACAAAGCCTTGAAGGGCGCGACCGGAGAGTACAATGACTATATC ATGCAGCTCAGTAAAGTGGTCAACGATGCGTGGTGGAAGAAGAAGCGGGACAACAATAAGCATCAATGGGCGGAG TTCGACAGCACCGTGCGCCTGATCAACATCGCGCGGACCGGGGACCACGGCAAGTACCTCATCCCTGCGGTAGAA CAAGGCCTTGGACACATCATGAATATCAAGCGAAAGTCGCTGGGCAATCATCCCGTTACGGGAGAAGGGTGGGAA ACGGTCGACTGGAAAGAAACGGCCGCGGCTGCTAAGAAAGCGGGCGTGGCAGACTATCATACGCACTTCACGCAC GTTCTAAATGATTTATATAGAGGGACACAGACGGACAATAACCATAAATCATTCAGGGATCACCACCAGGTGATA AGGTCGTACAAGCGGGTGGAAGATCGGTCTAGGTCATGCCGCAAGCATTGA |
| Gene | >Hirsu2|4603 ATGGCGACCGTCTCCTACATGTACCTGCTCCTCTCCCTCTTTGCGGCGACGGTCTGGGCCGGGGGATACCAAGGA TGCCTGGAGCGCGTCATGCTCTTCCAGGCCTACGAGATTGACGCCCTTAACCCGCCAAGCGACCAGACCGTGGGC TTTCGGTGCACCAGATTTAATACGCAAACCAAAAAATGCTCGGGCCACTGGGAACCGTGCAAGAAGAGAAACAAC GCAGCCGGCAGATGCGATTTCGACGAAATGATGGTTCATTTGGGAAGAGCCCCGAGGCAGACTGGCTGGGCCCGT TACAATGCAGCAACGGGGAGACTCGACGCCGAGGCTACGGCCAAGAACTGCTATCGTATTTTCGCGGCTCAAGGC GGAAACGCCAAGGTGCCCAACTTTCAGCCATACAAAGCCTTGAAGGGCGCGACCGGAGAGTACAATGACTATATC ATGCAGCTCAGTAAAGTGGTCAACGATGCGTGGTGGAAGAAGAAGCGGGACAACAATAAGCATCAATGGGCGGAG TTCGACAGCACCGTGCGCCTGATCAACATCGCGCGGACCGGGGACCACGGCAAGTACCTCATCCCTGCGGTAGAA CAAGGCCTTGGACACATCATGAATATCAAGCGAAAGTCGCTGGGCAATCATCCCGTTACGGGAGAAGGGTGGGAA ACGGTCGACTGGAAAGAAACGGCCGCGGCTGCTAAGAAAGCGGGCGTGGCAGACTATCATACGCACTTCACGCAC GTTCTAAATGATTTATATAGAGGGACACAGACGGACAATAACCATAAATCATTCAGGGATCACCACCAGGTGATA AGGTCGTACAAGCGGGTGGAAGATCGGTCTAGGTCATGCCGCAAGCATTGA |