Protein ID | Hirsu2|4603 |
Gene name | |
Location | Contig_233:19840..20716 |
Strand | - |
Gene length (bp) | 876 |
Transcript length (bp) | 876 |
Coding sequence length (bp) | 876 |
Protein length (aa) | 292 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.1422 | 0.0975 | 0.8619 | 0.1591 | 0.0713 | 0.0188 | 0.3848 | 0.2773 | 0.166 | 0.0009 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 20 | 0.999726 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 5 | 23 | 18 |
Orthofinder run ID | 4 |
Orthogroup | 9664 |
Change Orthofinder run |
Species | Protein ID |
---|---|
Ophiocordyceps subramaniannii | Hirsu2|4603 (this protein) |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|4603 MATVSYMYLLLSLFAATVWAGGYQGCLERVMLFQAYEIDALNPPSDQTVGFRCTRFNTQTKKCSGHWEPCKKRNN AAGRCDFDEMMVHLGRAPRQTGWARYNAATGRLDAEATAKNCYRIFAAQGGNAKVPNFQPYKALKGATGEYNDYI MQLSKVVNDAWWKKKRDNNKHQWAEFDSTVRLINIARTGDHGKYLIPAVEQGLGHIMNIKRKSLGNHPVTGEGWE TVDWKETAAAAKKAGVADYHTHFTHVLNDLYRGTQTDNNHKSFRDHHQVIRSYKRVEDRSRSCRKH* |
Coding | >Hirsu2|4603 ATGGCGACCGTCTCCTACATGTACCTGCTCCTCTCCCTCTTTGCGGCGACGGTCTGGGCCGGGGGATACCAAGGA TGCCTGGAGCGCGTCATGCTCTTCCAGGCCTACGAGATTGACGCCCTTAACCCGCCAAGCGACCAGACCGTGGGC TTTCGGTGCACCAGATTTAATACGCAAACCAAAAAATGCTCGGGCCACTGGGAACCGTGCAAGAAGAGAAACAAC GCAGCCGGCAGATGCGATTTCGACGAAATGATGGTTCATTTGGGAAGAGCCCCGAGGCAGACTGGCTGGGCCCGT TACAATGCAGCAACGGGGAGACTCGACGCCGAGGCTACGGCCAAGAACTGCTATCGTATTTTCGCGGCTCAAGGC GGAAACGCCAAGGTGCCCAACTTTCAGCCATACAAAGCCTTGAAGGGCGCGACCGGAGAGTACAATGACTATATC ATGCAGCTCAGTAAAGTGGTCAACGATGCGTGGTGGAAGAAGAAGCGGGACAACAATAAGCATCAATGGGCGGAG TTCGACAGCACCGTGCGCCTGATCAACATCGCGCGGACCGGGGACCACGGCAAGTACCTCATCCCTGCGGTAGAA CAAGGCCTTGGACACATCATGAATATCAAGCGAAAGTCGCTGGGCAATCATCCCGTTACGGGAGAAGGGTGGGAA ACGGTCGACTGGAAAGAAACGGCCGCGGCTGCTAAGAAAGCGGGCGTGGCAGACTATCATACGCACTTCACGCAC GTTCTAAATGATTTATATAGAGGGACACAGACGGACAATAACCATAAATCATTCAGGGATCACCACCAGGTGATA AGGTCGTACAAGCGGGTGGAAGATCGGTCTAGGTCATGCCGCAAGCATTGA |
Transcript | >Hirsu2|4603 ATGGCGACCGTCTCCTACATGTACCTGCTCCTCTCCCTCTTTGCGGCGACGGTCTGGGCCGGGGGATACCAAGGA TGCCTGGAGCGCGTCATGCTCTTCCAGGCCTACGAGATTGACGCCCTTAACCCGCCAAGCGACCAGACCGTGGGC TTTCGGTGCACCAGATTTAATACGCAAACCAAAAAATGCTCGGGCCACTGGGAACCGTGCAAGAAGAGAAACAAC GCAGCCGGCAGATGCGATTTCGACGAAATGATGGTTCATTTGGGAAGAGCCCCGAGGCAGACTGGCTGGGCCCGT TACAATGCAGCAACGGGGAGACTCGACGCCGAGGCTACGGCCAAGAACTGCTATCGTATTTTCGCGGCTCAAGGC GGAAACGCCAAGGTGCCCAACTTTCAGCCATACAAAGCCTTGAAGGGCGCGACCGGAGAGTACAATGACTATATC ATGCAGCTCAGTAAAGTGGTCAACGATGCGTGGTGGAAGAAGAAGCGGGACAACAATAAGCATCAATGGGCGGAG TTCGACAGCACCGTGCGCCTGATCAACATCGCGCGGACCGGGGACCACGGCAAGTACCTCATCCCTGCGGTAGAA CAAGGCCTTGGACACATCATGAATATCAAGCGAAAGTCGCTGGGCAATCATCCCGTTACGGGAGAAGGGTGGGAA ACGGTCGACTGGAAAGAAACGGCCGCGGCTGCTAAGAAAGCGGGCGTGGCAGACTATCATACGCACTTCACGCAC GTTCTAAATGATTTATATAGAGGGACACAGACGGACAATAACCATAAATCATTCAGGGATCACCACCAGGTGATA AGGTCGTACAAGCGGGTGGAAGATCGGTCTAGGTCATGCCGCAAGCATTGA |
Gene | >Hirsu2|4603 ATGGCGACCGTCTCCTACATGTACCTGCTCCTCTCCCTCTTTGCGGCGACGGTCTGGGCCGGGGGATACCAAGGA TGCCTGGAGCGCGTCATGCTCTTCCAGGCCTACGAGATTGACGCCCTTAACCCGCCAAGCGACCAGACCGTGGGC TTTCGGTGCACCAGATTTAATACGCAAACCAAAAAATGCTCGGGCCACTGGGAACCGTGCAAGAAGAGAAACAAC GCAGCCGGCAGATGCGATTTCGACGAAATGATGGTTCATTTGGGAAGAGCCCCGAGGCAGACTGGCTGGGCCCGT TACAATGCAGCAACGGGGAGACTCGACGCCGAGGCTACGGCCAAGAACTGCTATCGTATTTTCGCGGCTCAAGGC GGAAACGCCAAGGTGCCCAACTTTCAGCCATACAAAGCCTTGAAGGGCGCGACCGGAGAGTACAATGACTATATC ATGCAGCTCAGTAAAGTGGTCAACGATGCGTGGTGGAAGAAGAAGCGGGACAACAATAAGCATCAATGGGCGGAG TTCGACAGCACCGTGCGCCTGATCAACATCGCGCGGACCGGGGACCACGGCAAGTACCTCATCCCTGCGGTAGAA CAAGGCCTTGGACACATCATGAATATCAAGCGAAAGTCGCTGGGCAATCATCCCGTTACGGGAGAAGGGTGGGAA ACGGTCGACTGGAAAGAAACGGCCGCGGCTGCTAAGAAAGCGGGCGTGGCAGACTATCATACGCACTTCACGCAC GTTCTAAATGATTTATATAGAGGGACACAGACGGACAATAACCATAAATCATTCAGGGATCACCACCAGGTGATA AGGTCGTACAAGCGGGTGGAAGATCGGTCTAGGTCATGCCGCAAGCATTGA |