© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|4595 |
| Gene name | |
| Location | Contig_2328:903..2556 |
| Strand | + |
| Gene length (bp) | 1653 |
| Transcript length (bp) | 954 |
| Coding sequence length (bp) | 954 |
| Protein length (aa) | 318 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13489 | Methyltransf_23 | Methyltransferase domain | 4.0E-22 | 78 | 235 |
| PF13649 | Methyltransf_25 | Methyltransferase domain | 6.5E-11 | 86 | 173 |
| PF13847 | Methyltransf_31 | Methyltransferase domain | 6.4E-08 | 85 | 183 |
| PF08241 | Methyltransf_11 | Methyltransferase domain | 3.8E-07 | 87 | 175 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9RX93|TAM_DEIRA | Trans-aconitate 2-methyltransferase OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=tam PE=3 SV=1 | 80 | 234 | 3.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008168 | methyltransferase activity | Yes |
| GO:0016740 | transferase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0016741 | transferase activity, transferring one-carbon groups | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.6416 | 0.2979 | 0.054 | 0.274 | 0.1643 | 0.0087 | 0.2349 | 0.1688 | 0.2834 | 0.0387 |
| Orthofinder run ID | 4 |
| Orthogroup | 426 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4595 MSDEAAGGTAPWASSIVHCQFLNIAGVDRRRTSPATTNGRIFGGYVLPNDEVENERLDLQHHLCTLTLSGKLYTC PAGRERPLDRVLDAGTGTGIWAMDLADEHPESHVTGVDLSPIQPSFVPPNVSFYIDDIEDDWTFTYKFDLVYARM LTASISDWPRFFQQSFENLNPGGWIEILDVHLQLKSDDGTIPENCAVAKWGDYMLEAAAKLNRPLDSMTFYKQQL EAVGFSNVTQNLYKWPTNSWPKDPKFKELGMWTYENLGNGASGLSMALFTRALGWKSEEVEVFLVNVRKQMRDRS IHAYWPIYVVYAQKPEY* |
| Coding | >Hirsu2|4595 ATGTCTGACGAGGCCGCGGGCGGCACGGCGCCCTGGGCATCGAGCATAGTCCATTGCCAGTTCCTCAACATCGCT GGCGTCGACCGGAGACGGACGAGCCCAGCGACGACTAACGGGCGCATCTTTGGAGGATACGTCCTGCCAAATGAC GAGGTCGAGAACGAGCGTCTAGACCTGCAACATCACCTCTGCACCTTGACCCTGAGTGGTAAGCTGTATACGTGC CCTGCCGGGCGAGAACGACCGCTCGACCGCGTCTTGGATGCCGGGACCGGTACGGGCATCTGGGCGATGGATCTA GCCGACGAGCATCCCGAAAGCCATGTCACCGGGGTCGACCTCAGCCCGATACAACCGTCATTCGTCCCGCCCAAC GTATCCTTCTACATCGACGACATCGAGGACGATTGGACGTTTACATACAAGTTTGATCTCGTCTACGCGCGCATG TTGACGGCGTCGATATCGGACTGGCCGAGGTTCTTCCAGCAAAGCTTTGAAAACCTCAACCCGGGGGGCTGGATC GAGATTCTCGATGTCCATCTCCAGCTCAAGAGCGACGACGGGACAATACCAGAGAACTGCGCAGTGGCCAAGTGG GGAGACTACATGCTGGAGGCGGCGGCCAAGCTGAACCGGCCGCTGGACAGCATGACGTTCTACAAGCAGCAGCTG GAGGCGGTCGGGTTCAGCAACGTGACGCAGAACCTGTACAAGTGGCCGACCAACTCGTGGCCAAAGGACCCCAAG TTCAAAGAGTTAGGCATGTGGACGTACGAGAACCTGGGCAACGGCGCGTCCGGGCTGAGCATGGCCCTCTTCACC CGGGCGCTCGGCTGGAAGTCGGAGGAGGTGGAGGTGTTTCTGGTCAACGTGCGGAAGCAGATGAGGGACCGCTCC ATCCACGCGTATTGGCCGATATACGTGGTATACGCGCAGAAGCCCGAGTACTAA |
| Transcript | >Hirsu2|4595 ATGTCTGACGAGGCCGCGGGCGGCACGGCGCCCTGGGCATCGAGCATAGTCCATTGCCAGTTCCTCAACATCGCT GGCGTCGACCGGAGACGGACGAGCCCAGCGACGACTAACGGGCGCATCTTTGGAGGATACGTCCTGCCAAATGAC GAGGTCGAGAACGAGCGTCTAGACCTGCAACATCACCTCTGCACCTTGACCCTGAGTGGTAAGCTGTATACGTGC CCTGCCGGGCGAGAACGACCGCTCGACCGCGTCTTGGATGCCGGGACCGGTACGGGCATCTGGGCGATGGATCTA GCCGACGAGCATCCCGAAAGCCATGTCACCGGGGTCGACCTCAGCCCGATACAACCGTCATTCGTCCCGCCCAAC GTATCCTTCTACATCGACGACATCGAGGACGATTGGACGTTTACATACAAGTTTGATCTCGTCTACGCGCGCATG TTGACGGCGTCGATATCGGACTGGCCGAGGTTCTTCCAGCAAAGCTTTGAAAACCTCAACCCGGGGGGCTGGATC GAGATTCTCGATGTCCATCTCCAGCTCAAGAGCGACGACGGGACAATACCAGAGAACTGCGCAGTGGCCAAGTGG GGAGACTACATGCTGGAGGCGGCGGCCAAGCTGAACCGGCCGCTGGACAGCATGACGTTCTACAAGCAGCAGCTG GAGGCGGTCGGGTTCAGCAACGTGACGCAGAACCTGTACAAGTGGCCGACCAACTCGTGGCCAAAGGACCCCAAG TTCAAAGAGTTAGGCATGTGGACGTACGAGAACCTGGGCAACGGCGCGTCCGGGCTGAGCATGGCCCTCTTCACC CGGGCGCTCGGCTGGAAGTCGGAGGAGGTGGAGGTGTTTCTGGTCAACGTGCGGAAGCAGATGAGGGACCGCTCC ATCCACGCGTATTGGCCGATATACGTGGTATACGCGCAGAAGCCCGAGTACTAA |
| Gene | >Hirsu2|4595 ATGTCTGACGAGGCCGCGGGCGGCACGGCGCCCTGGGCATCGAGCATAGTCCATTGCCAGTTCCTCAACATCGCT GGCGTCGAGTATCATGAGATATCGCGAAGAGAACGGGCGGACATATCACGCGTTTCGAGCCGGCAGTATGCGCTC CCACTTCCCCCCACCCCCTCCCTTCTCTCCCCTCCCCCCGTCCCCCGCTTCCCAAGCCGGAGACGGACGAGCCCA GCGACGACTAACGGGCGCATCTTTGGAGGATACGTCCTGCCAAATGACGAGGTAGGCCGGGGTCGACACACTTCG GGTAACCGCGGCGGCGGCTAACGGGCCAAGCACACAGGTCGAGAACGAGCGTCTAGGTAGGCCGCCGAGACAGCC GTCCAGGAGAAGAACAAAGCTAAGGACGGGACGCCTCCACCCACAGACCTGCAACATCACCTCTGCACCTTGACC CTGAGTGGTAAGCTGTATACGTGCCCTGCCGGGCGAGAACGACCGCTCGACCGCGTCTTGGATGCCGGGACCGGT ACGGGCATCTGGGCGATGGATCTAGGTACGAGACCCGATCGGCGAGGGCCCATGGGCCCAGCGCGCGCTGACGGC CAGCCTCAGCCGACGAGCATCCCGAAAGCCATGTACGTGGACCGACAATACAGGCGGCGCCGAGGACGGAAAGCT CAAACGTGTCCAGGTCACCGGGGTCGACCTCAGCCCGATACAACCGTCATTGTACGTCGTGGGCCGTCGGTCGGA GACGACGACGGCGGATGTGTGCTGACGGGAGCCTTCGTGTTTGCAGCGTCCCGCCCAACGTATCCTTCTACATCG ACGACATCGAGGACGATTGGACGTTTACATACAAGTTTGATCTCGTCTACGCGCGCATGTTGACGGCGTCGATAT CGGACTGGCCGAGGTTCTTCCAGCAAAGCTTTGAGTAATGCCCCTGCCCTCGCCCTGGACGCGCCCTCATCATTG GTGGAGGGGGGCAGCGTTTGCAATCGTCGCGCGTCATCGGACCTCATTCTGACATGTTGTCGGGGCGGGACAGAA ACCTCAACCCGGGGGGCTGGATCGAGATTCTCGATGTCCATCTCCAGCTCAAGAGCGACGACGGGACAATACCAG AGAACTGCGCAGTGGCCAAGTGGGGAGACTACATGCTGGAGGCGGCGGCCAAGCTGAACCGGCCGCTGGACAGCA TGACGTTCTACAAGCAGCAGCTGGAGGCGGTCGGGTTCAGCAACGTGACGCAGAACCTGTACAAGTGGCCGACCA ACTCGTGGCCAAAGGACCCCAAGTTCAAAGAGTTAGGTAGGTGGCGAGGACTCATGCAGGGATCGACGTGCCGAG GCGGCAACGGCGGCTGACGGGCGACGGCGATGTGGTGCAGGCATGTGGACGTACGAGAACCTGGGCAACGGCGCG TCCGGGCTGAGCATGGCCCTCTTCACCCGGGCGCTCGGCTGGAAGTCGGAGGAGGTGGAGGTGTTTCTGGTCAAC GTGCGGAAGCAGATGAGGGACCGCTCCATCCACGCGTATTGGCCGATGTGAGTTTGCCCGCCCGCGACGAATGAA GGGGTTGCATGACGGCTCACACCGGACGTGATCCAACGATGCAGATACGTGGTATACGCGCAGAAGCCCGAGTAC TAA |