Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|4581
Gene name
LocationContig_232:12740..13569
Strand+
Gene length (bp)829
Transcript length (bp)726
Coding sequence length (bp)726
Protein length (aa) 242

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04982 HPP HPP family 1.0E-39 69 198

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q55EF8|Y9096_DICDI Transmembrane protein DDB_G0269096 OS=Dictyostelium discoideum GN=DDB_G0269096 PE=4 SV=1 13 202 9.0E-28
sp|Q556Z9|Y3361_DICDI Transmembrane protein DDB_G0273707/DDB_G0273361 OS=Dictyostelium discoideum GN=DDB_G0273707 PE=4 SV=2 16 202 9.0E-24

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.5

Transmembrane Domains

Domain # Start End Length
1 33 55 22
2 68 85 17
3 95 117 22
4 126 148 22
5 168 190 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|4581
MTTTAHASRPQPLLVFAGRWLGLRPSPPAPLPLWLSLVWAFVGAFAGLAVLQAVFGQSEHFTRQHVPPIVASYGA
SAVLCFGVIESPLAQPRALLGGHLISAVVGIVVAIAFRITGLRDEDPTPRLSWLASSLATAVALVLMLATKTTHP
PAGATALLPITSPPINRLGWYLLPVVLLSSSLLMAVAMLTNNIQRRYPLFWWSPPRPEKPGPPPELPKAPDEPGR
RPPGDDVEKQGEAESS*
Coding >Hirsu2|4581
ATGACGACGACGGCCCACGCGTCTCGGCCCCAGCCGCTCCTCGTCTTTGCCGGCCGCTGGCTCGGGCTCCGACCG
TCGCCGCCGGCGCCCCTCCCGCTCTGGCTGTCCCTCGTTTGGGCCTTCGTCGGCGCCTTCGCCGGCCTGGCCGTG
CTGCAGGCCGTCTTCGGCCAGAGCGAGCACTTCACCAGGCAACACGTGCCGCCCATCGTTGCCTCATACGGGGCC
TCGGCCGTGCTGTGCTTCGGCGTCATCGAGTCCCCGCTCGCGCAGCCGCGCGCGCTGCTGGGCGGACACCTGATC
AGCGCCGTCGTGGGCATCGTCGTCGCCATCGCCTTCCGCATCACGGGCCTGCGCGATGAGGACCCGACGCCGCGG
CTGAGCTGGCTCGCCTCGTCGCTCGCCACCGCCGTCGCCCTGGTGCTGATGCTGGCCACCAAGACGACGCACCCG
CCCGCCGGCGCCACCGCCCTGCTGCCCATCACCAGCCCGCCCATCAACCGCCTCGGCTGGTACCTGCTGCCCGTC
GTCCTGCTGTCCTCGTCGCTGCTGATGGCCGTGGCCATGCTCACCAACAACATCCAGCGACGCTACCCGCTCTTC
TGGTGGTCGCCGCCCCGGCCCGAGAAGCCCGGCCCGCCGCCCGAGCTGCCCAAGGCCCCCGACGAGCCCGGCCGC
CGGCCTCCCGGGGACGACGTCGAGAAGCAGGGAGAGGCCGAGTCATCGTAG
Transcript >Hirsu2|4581
ATGACGACGACGGCCCACGCGTCTCGGCCCCAGCCGCTCCTCGTCTTTGCCGGCCGCTGGCTCGGGCTCCGACCG
TCGCCGCCGGCGCCCCTCCCGCTCTGGCTGTCCCTCGTTTGGGCCTTCGTCGGCGCCTTCGCCGGCCTGGCCGTG
CTGCAGGCCGTCTTCGGCCAGAGCGAGCACTTCACCAGGCAACACGTGCCGCCCATCGTTGCCTCATACGGGGCC
TCGGCCGTGCTGTGCTTCGGCGTCATCGAGTCCCCGCTCGCGCAGCCGCGCGCGCTGCTGGGCGGACACCTGATC
AGCGCCGTCGTGGGCATCGTCGTCGCCATCGCCTTCCGCATCACGGGCCTGCGCGATGAGGACCCGACGCCGCGG
CTGAGCTGGCTCGCCTCGTCGCTCGCCACCGCCGTCGCCCTGGTGCTGATGCTGGCCACCAAGACGACGCACCCG
CCCGCCGGCGCCACCGCCCTGCTGCCCATCACCAGCCCGCCCATCAACCGCCTCGGCTGGTACCTGCTGCCCGTC
GTCCTGCTGTCCTCGTCGCTGCTGATGGCCGTGGCCATGCTCACCAACAACATCCAGCGACGCTACCCGCTCTTC
TGGTGGTCGCCGCCCCGGCCCGAGAAGCCCGGCCCGCCGCCCGAGCTGCCCAAGGCCCCCGACGAGCCCGGCCGC
CGGCCTCCCGGGGACGACGTCGAGAAGCAGGGAGAGGCCGAGTCATCGTAG
Gene >Hirsu2|4581
ATGACGACGACGGCCCACGCGTCTCGGCCCCAGCCGCTCCTCGTCTTTGCCGGCCGCTGGCTCGGGCTCCGACCG
TCGCCGCCGGCGCCCCTCCCGCTCTGGCTGTCCCTCGTTTGGGCCTTCGTCGGCGCCTTCGCCGGCCTGGCCGTG
CTGCAGGCCGTCTTCGGCCAGAGCGAGCACTTCACCAGGCAACACGTGCCGCCCATCGTTGCCTCATACGTCCGT
CGCGACTCGCAAGCCCCCTCTCTCCCTAAGCCCGCGTGAGGCTTTTTTTCCCCCTGTCTCTTCGTCTGACTGAAG
CGTGGGCGCGTGTTGCTTATAGGGGGCCTCGGCCGTGCTGTGCTTCGGCGTCATCGAGTCCCCGCTCGCGCAGCC
GCGCGCGCTGCTGGGCGGACACCTGATCAGCGCCGTCGTGGGCATCGTCGTCGCCATCGCCTTCCGCATCACGGG
CCTGCGCGATGAGGACCCGACGCCGCGGCTGAGCTGGCTCGCCTCGTCGCTCGCCACCGCCGTCGCCCTGGTGCT
GATGCTGGCCACCAAGACGACGCACCCGCCCGCCGGCGCCACCGCCCTGCTGCCCATCACCAGCCCGCCCATCAA
CCGCCTCGGCTGGTACCTGCTGCCCGTCGTCCTGCTGTCCTCGTCGCTGCTGATGGCCGTGGCCATGCTCACCAA
CAACATCCAGCGACGCTACCCGCTCTTCTGGTGGTCGCCGCCCCGGCCCGAGAAGCCCGGCCCGCCGCCCGAGCT
GCCCAAGGCCCCCGACGAGCCCGGCCGCCGGCCTCCCGGGGACGACGTCGAGAAGCAGGGAGAGGCCGAGTCATC
GTAG

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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