Fungal Genomics

at Utrecht University

General Properties

Protein ID	Hirsu2\|4581
Gene name
Location	Contig_232:12740..13569
Strand	+
Gene length (bp)	829
Transcript length (bp)	726
Coding sequence length (bp)	726
Protein length (aa)	242

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04982	HPP	HPP family	1.9E-40	69	198

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q55EF8\|Y9096_DICDI	Transmembrane protein DDB_G0269096 OS=Dictyostelium discoideum GN=DDB_G0269096 PE=4 SV=1	13	202	9.0E-28
sp\|Q556Z9\|Y3361_DICDI	Transmembrane protein DDB_G0273707/DDB_G0273361 OS=Dictyostelium discoideum GN=DDB_G0273707 PE=4 SV=2	16	202	9.0E-24

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 11	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	33	55	22
2	68	85	17
3	95	117	22
4	126	148	22
5	168	190	22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2\|4581 MTTTAHASRPQPLLVFAGRWLGLRPSPPAPLPLWLSLVWAFVGAFAGLAVLQAVFGQSEHFTRQHVPPIVASYGA SAVLCFGVIESPLAQPRALLGGHLISAVVGIVVAIAFRITGLRDEDPTPRLSWLASSLATAVALVLMLATKTTHP PAGATALLPITSPPINRLGWYLLPVVLLSSSLLMAVAMLTNNIQRRYPLFWWSPPRPEKPGPPPELPKAPDEPGR RPPGDDVEKQGEAESS*
Coding	>Hirsu2\|4581 ATGACGACGACGGCCCACGCGTCTCGGCCCCAGCCGCTCCTCGTCTTTGCCGGCCGCTGGCTCGGGCTCCGACCG TCGCCGCCGGCGCCCCTCCCGCTCTGGCTGTCCCTCGTTTGGGCCTTCGTCGGCGCCTTCGCCGGCCTGGCCGTG CTGCAGGCCGTCTTCGGCCAGAGCGAGCACTTCACCAGGCAACACGTGCCGCCCATCGTTGCCTCATACGGGGCC TCGGCCGTGCTGTGCTTCGGCGTCATCGAGTCCCCGCTCGCGCAGCCGCGCGCGCTGCTGGGCGGACACCTGATC AGCGCCGTCGTGGGCATCGTCGTCGCCATCGCCTTCCGCATCACGGGCCTGCGCGATGAGGACCCGACGCCGCGG CTGAGCTGGCTCGCCTCGTCGCTCGCCACCGCCGTCGCCCTGGTGCTGATGCTGGCCACCAAGACGACGCACCCG CCCGCCGGCGCCACCGCCCTGCTGCCCATCACCAGCCCGCCCATCAACCGCCTCGGCTGGTACCTGCTGCCCGTC GTCCTGCTGTCCTCGTCGCTGCTGATGGCCGTGGCCATGCTCACCAACAACATCCAGCGACGCTACCCGCTCTTC TGGTGGTCGCCGCCCCGGCCCGAGAAGCCCGGCCCGCCGCCCGAGCTGCCCAAGGCCCCCGACGAGCCCGGCCGC CGGCCTCCCGGGGACGACGTCGAGAAGCAGGGAGAGGCCGAGTCATCGTAG
Transcript	>Hirsu2\|4581 ATGACGACGACGGCCCACGCGTCTCGGCCCCAGCCGCTCCTCGTCTTTGCCGGCCGCTGGCTCGGGCTCCGACCG TCGCCGCCGGCGCCCCTCCCGCTCTGGCTGTCCCTCGTTTGGGCCTTCGTCGGCGCCTTCGCCGGCCTGGCCGTG CTGCAGGCCGTCTTCGGCCAGAGCGAGCACTTCACCAGGCAACACGTGCCGCCCATCGTTGCCTCATACGGGGCC TCGGCCGTGCTGTGCTTCGGCGTCATCGAGTCCCCGCTCGCGCAGCCGCGCGCGCTGCTGGGCGGACACCTGATC AGCGCCGTCGTGGGCATCGTCGTCGCCATCGCCTTCCGCATCACGGGCCTGCGCGATGAGGACCCGACGCCGCGG CTGAGCTGGCTCGCCTCGTCGCTCGCCACCGCCGTCGCCCTGGTGCTGATGCTGGCCACCAAGACGACGCACCCG CCCGCCGGCGCCACCGCCCTGCTGCCCATCACCAGCCCGCCCATCAACCGCCTCGGCTGGTACCTGCTGCCCGTC GTCCTGCTGTCCTCGTCGCTGCTGATGGCCGTGGCCATGCTCACCAACAACATCCAGCGACGCTACCCGCTCTTC TGGTGGTCGCCGCCCCGGCCCGAGAAGCCCGGCCCGCCGCCCGAGCTGCCCAAGGCCCCCGACGAGCCCGGCCGC CGGCCTCCCGGGGACGACGTCGAGAAGCAGGGAGAGGCCGAGTCATCGTAG
Gene	>Hirsu2\|4581 ATGACGACGACGGCCCACGCGTCTCGGCCCCAGCCGCTCCTCGTCTTTGCCGGCCGCTGGCTCGGGCTCCGACCG TCGCCGCCGGCGCCCCTCCCGCTCTGGCTGTCCCTCGTTTGGGCCTTCGTCGGCGCCTTCGCCGGCCTGGCCGTG CTGCAGGCCGTCTTCGGCCAGAGCGAGCACTTCACCAGGCAACACGTGCCGCCCATCGTTGCCTCATACGTCCGT CGCGACTCGCAAGCCCCCTCTCTCCCTAAGCCCGCGTGAGGCTTTTTTTCCCCCTGTCTCTTCGTCTGACTGAAG CGTGGGCGCGTGTTGCTTATAGGGGGCCTCGGCCGTGCTGTGCTTCGGCGTCATCGAGTCCCCGCTCGCGCAGCC GCGCGCGCTGCTGGGCGGACACCTGATCAGCGCCGTCGTGGGCATCGTCGTCGCCATCGCCTTCCGCATCACGGG CCTGCGCGATGAGGACCCGACGCCGCGGCTGAGCTGGCTCGCCTCGTCGCTCGCCACCGCCGTCGCCCTGGTGCT GATGCTGGCCACCAAGACGACGCACCCGCCCGCCGGCGCCACCGCCCTGCTGCCCATCACCAGCCCGCCCATCAA CCGCCTCGGCTGGTACCTGCTGCCCGTCGTCCTGCTGTCCTCGTCGCTGCTGATGGCCGTGGCCATGCTCACCAA CAACATCCAGCGACGCTACCCGCTCTTCTGGTGGTCGCCGCCCCGGCCCGAGAAGCCCGGCCCGCCGCCCGAGCT GCCCAAGGCCCCCGACGAGCCCGGCCGCCGGCCTCCCGGGGACGACGTCGAGAAGCAGGGAGAGGCCGAGTCATC GTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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