Protein ID | Hirsu2|4577 |
Gene name | |
Location | Contig_2319:1304..2089 |
Strand | + |
Gene length (bp) | 785 |
Transcript length (bp) | 339 |
Coding sequence length (bp) | 339 |
Protein length (aa) | 113 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.1357 | 0.1898 | 0.3843 | 0.3783 | 0.1386 | 0.0095 | 0.5375 | 0.3292 | 0.1869 | 0.0136 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 10 | 29 | 19 |
2 | 36 | 58 | 22 |
3 | 78 | 100 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 6140 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|4577 LPDLAPPPRISSCALLCFCACFLLLLDGISKAEHHFLFSPRSLPLPVAMAAIGASLLARSTLHQLSKRERNWAYR EPGVVLVFCIVFIVACGLIALWIYKLMQKRKNRKQAE* |
Coding | >Hirsu2|4577 CTGCCAGACCTCGCTCCTCCACCTCGCATCTCCTCCTGCGCCCTCCTCTGCTTCTGCGCCTGCTTCCTCCTCCTC CTCGACGGCATCTCCAAAGCCGAGCACCACTTCCTCTTCTCTCCCCGCTCTTTGCCTCTGCCTGTCGCAATGGCT GCCATCGGAGCCTCGCTCCTTGCCCGCTCCACCCTTCACCAGCTGTCGAAGCGTGAGCGCAACTGGGCCTACCGG GAGCCTGGCGTCGTCCTCGTCTTCTGCATCGTCTTCATTGTCGCCTGCGGATTAATCGCTCTGTGGATCTACAAG CTCATGCAGAAGCGCAAAAACAGGAAACAGGCCGAGTAG |
Transcript | >Hirsu2|4577 CTGCCAGACCTCGCTCCTCCACCTCGCATCTCCTCCTGCGCCCTCCTCTGCTTCTGCGCCTGCTTCCTCCTCCTC CTCGACGGCATCTCCAAAGCCGAGCACCACTTCCTCTTCTCTCCCCGCTCTTTGCCTCTGCCTGTCGCAATGGCT GCCATCGGAGCCTCGCTCCTTGCCCGCTCCACCCTTCACCAGCTGTCGAAGCGTGAGCGCAACTGGGCCTACCGG GAGCCTGGCGTCGTCCTCGTCTTCTGCATCGTCTTCATTGTCGCCTGCGGATTAATCGCTCTGTGGATCTACAAG CTCATGCAGAAGCGCAAAAACAGGAAACAGGCCGAGTAG |
Gene | >Hirsu2|4577 CTGCCAGACCTCGCTCCTCCACCTCGCATCTCCTCCTGCGCCCTCCTCTGCTTCTGCGCCTGCTTCCTCCTCCTC CTCGACGGCATCTCCAAAGGTAAGCGAGCGGCCTCCCCTGCTACTCCTCCCTGCTCCCTCGCTCCCTCCTCGACG ACGACGACGACCATGACAAGACGCCTGTCGACAGCCTCTTCCTTGGCTCTGGCCCGCCACCTCCGTCGCCGCCTG TGGTACCTCGACTCAACCGCGGCATTCCTACCGGCCAAGCTCCCCGGCCCATGCCGCCACGGCTTATTGTCCTCT GAGACTGGTCCCGCTCGTCGAGGCAAGCAAAACAAGACCATCTGATCAGCAGCTCTGTCGTCGTCGTCGTCGTCG TCTCACCAGTCGTCGCTGCTGTACAGGTCTCCGGACCGAAATGAAAAGGAAAAAAAGACAAAGACTCACAGAGCT GACTTGGACACGCCAAACAAACCAGCCGAGCACCACTTCCTCTTCTCTCCCCGCTCTTTGCCTCTGCCTGTCGCA ATGGCTGCCATCGGAGCCTCGCTCCTTGCCCGCTCCACCCTTCACCAGCTGTCGAAGCGTGAGCGCAACTGGGCC TACCGGGAGCCTGGCGTCGTCCTCGTCTTCTGCATCGTCTTCATTGGTAAGTCGCACGCCTCGTCGCGTCTCGTC CAGAACGGAGCTCTTGCTGACCATTCTCACCCGCAGTCGCCTGCGGATTAATCGCTCTGTGGATCTACAAGCTCA TGCAGAAGCGCAAAAACAGGAAACAGGCCGAGTAG |