© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|4577 |
| Gene name | |
| Location | Contig_2319:1304..2089 |
| Strand | + |
| Gene length (bp) | 785 |
| Transcript length (bp) | 339 |
| Coding sequence length (bp) | 339 |
| Protein length (aa) | 113 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.1357 | 0.1898 | 0.3843 | 0.3783 | 0.1386 | 0.0095 | 0.5375 | 0.3292 | 0.1869 | 0.0136 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 29 | 19 |
| 2 | 36 | 58 | 22 |
| 3 | 78 | 100 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 6140 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4577 LPDLAPPPRISSCALLCFCACFLLLLDGISKAEHHFLFSPRSLPLPVAMAAIGASLLARSTLHQLSKRERNWAYR EPGVVLVFCIVFIVACGLIALWIYKLMQKRKNRKQAE* |
| Coding | >Hirsu2|4577 CTGCCAGACCTCGCTCCTCCACCTCGCATCTCCTCCTGCGCCCTCCTCTGCTTCTGCGCCTGCTTCCTCCTCCTC CTCGACGGCATCTCCAAAGCCGAGCACCACTTCCTCTTCTCTCCCCGCTCTTTGCCTCTGCCTGTCGCAATGGCT GCCATCGGAGCCTCGCTCCTTGCCCGCTCCACCCTTCACCAGCTGTCGAAGCGTGAGCGCAACTGGGCCTACCGG GAGCCTGGCGTCGTCCTCGTCTTCTGCATCGTCTTCATTGTCGCCTGCGGATTAATCGCTCTGTGGATCTACAAG CTCATGCAGAAGCGCAAAAACAGGAAACAGGCCGAGTAG |
| Transcript | >Hirsu2|4577 CTGCCAGACCTCGCTCCTCCACCTCGCATCTCCTCCTGCGCCCTCCTCTGCTTCTGCGCCTGCTTCCTCCTCCTC CTCGACGGCATCTCCAAAGCCGAGCACCACTTCCTCTTCTCTCCCCGCTCTTTGCCTCTGCCTGTCGCAATGGCT GCCATCGGAGCCTCGCTCCTTGCCCGCTCCACCCTTCACCAGCTGTCGAAGCGTGAGCGCAACTGGGCCTACCGG GAGCCTGGCGTCGTCCTCGTCTTCTGCATCGTCTTCATTGTCGCCTGCGGATTAATCGCTCTGTGGATCTACAAG CTCATGCAGAAGCGCAAAAACAGGAAACAGGCCGAGTAG |
| Gene | >Hirsu2|4577 CTGCCAGACCTCGCTCCTCCACCTCGCATCTCCTCCTGCGCCCTCCTCTGCTTCTGCGCCTGCTTCCTCCTCCTC CTCGACGGCATCTCCAAAGGTAAGCGAGCGGCCTCCCCTGCTACTCCTCCCTGCTCCCTCGCTCCCTCCTCGACG ACGACGACGACCATGACAAGACGCCTGTCGACAGCCTCTTCCTTGGCTCTGGCCCGCCACCTCCGTCGCCGCCTG TGGTACCTCGACTCAACCGCGGCATTCCTACCGGCCAAGCTCCCCGGCCCATGCCGCCACGGCTTATTGTCCTCT GAGACTGGTCCCGCTCGTCGAGGCAAGCAAAACAAGACCATCTGATCAGCAGCTCTGTCGTCGTCGTCGTCGTCG TCTCACCAGTCGTCGCTGCTGTACAGGTCTCCGGACCGAAATGAAAAGGAAAAAAAGACAAAGACTCACAGAGCT GACTTGGACACGCCAAACAAACCAGCCGAGCACCACTTCCTCTTCTCTCCCCGCTCTTTGCCTCTGCCTGTCGCA ATGGCTGCCATCGGAGCCTCGCTCCTTGCCCGCTCCACCCTTCACCAGCTGTCGAAGCGTGAGCGCAACTGGGCC TACCGGGAGCCTGGCGTCGTCCTCGTCTTCTGCATCGTCTTCATTGGTAAGTCGCACGCCTCGTCGCGTCTCGTC CAGAACGGAGCTCTTGCTGACCATTCTCACCCGCAGTCGCCTGCGGATTAATCGCTCTGTGGATCTACAAGCTCA TGCAGAAGCGCAAAAACAGGAAACAGGCCGAGTAG |