Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|4577
Gene name
LocationContig_2319:1304..2089
Strand+
Gene length (bp)785
Transcript length (bp)339
Coding sequence length (bp)339
Protein length (aa) 113

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Endoplasmic reticulum Signal peptide|Transmembrane domain 0.1357 0.1898 0.3843 0.3783 0.1386 0.0095 0.5375 0.3292 0.1869 0.0136

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 10 29 19
2 36 58 22
3 78 100 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup6140
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|6035
Ophiocordyceps camponoti-rufipedis Ophun1|515
Ophiocordyceps kimflemingae Ophio5|4566
Ophiocordyceps subramaniannii Hirsu2|4577 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|4577
LPDLAPPPRISSCALLCFCACFLLLLDGISKAEHHFLFSPRSLPLPVAMAAIGASLLARSTLHQLSKRERNWAYR
EPGVVLVFCIVFIVACGLIALWIYKLMQKRKNRKQAE*
Coding >Hirsu2|4577
CTGCCAGACCTCGCTCCTCCACCTCGCATCTCCTCCTGCGCCCTCCTCTGCTTCTGCGCCTGCTTCCTCCTCCTC
CTCGACGGCATCTCCAAAGCCGAGCACCACTTCCTCTTCTCTCCCCGCTCTTTGCCTCTGCCTGTCGCAATGGCT
GCCATCGGAGCCTCGCTCCTTGCCCGCTCCACCCTTCACCAGCTGTCGAAGCGTGAGCGCAACTGGGCCTACCGG
GAGCCTGGCGTCGTCCTCGTCTTCTGCATCGTCTTCATTGTCGCCTGCGGATTAATCGCTCTGTGGATCTACAAG
CTCATGCAGAAGCGCAAAAACAGGAAACAGGCCGAGTAG
Transcript >Hirsu2|4577
CTGCCAGACCTCGCTCCTCCACCTCGCATCTCCTCCTGCGCCCTCCTCTGCTTCTGCGCCTGCTTCCTCCTCCTC
CTCGACGGCATCTCCAAAGCCGAGCACCACTTCCTCTTCTCTCCCCGCTCTTTGCCTCTGCCTGTCGCAATGGCT
GCCATCGGAGCCTCGCTCCTTGCCCGCTCCACCCTTCACCAGCTGTCGAAGCGTGAGCGCAACTGGGCCTACCGG
GAGCCTGGCGTCGTCCTCGTCTTCTGCATCGTCTTCATTGTCGCCTGCGGATTAATCGCTCTGTGGATCTACAAG
CTCATGCAGAAGCGCAAAAACAGGAAACAGGCCGAGTAG
Gene >Hirsu2|4577
CTGCCAGACCTCGCTCCTCCACCTCGCATCTCCTCCTGCGCCCTCCTCTGCTTCTGCGCCTGCTTCCTCCTCCTC
CTCGACGGCATCTCCAAAGGTAAGCGAGCGGCCTCCCCTGCTACTCCTCCCTGCTCCCTCGCTCCCTCCTCGACG
ACGACGACGACCATGACAAGACGCCTGTCGACAGCCTCTTCCTTGGCTCTGGCCCGCCACCTCCGTCGCCGCCTG
TGGTACCTCGACTCAACCGCGGCATTCCTACCGGCCAAGCTCCCCGGCCCATGCCGCCACGGCTTATTGTCCTCT
GAGACTGGTCCCGCTCGTCGAGGCAAGCAAAACAAGACCATCTGATCAGCAGCTCTGTCGTCGTCGTCGTCGTCG
TCTCACCAGTCGTCGCTGCTGTACAGGTCTCCGGACCGAAATGAAAAGGAAAAAAAGACAAAGACTCACAGAGCT
GACTTGGACACGCCAAACAAACCAGCCGAGCACCACTTCCTCTTCTCTCCCCGCTCTTTGCCTCTGCCTGTCGCA
ATGGCTGCCATCGGAGCCTCGCTCCTTGCCCGCTCCACCCTTCACCAGCTGTCGAAGCGTGAGCGCAACTGGGCC
TACCGGGAGCCTGGCGTCGTCCTCGTCTTCTGCATCGTCTTCATTGGTAAGTCGCACGCCTCGTCGCGTCTCGTC
CAGAACGGAGCTCTTGCTGACCATTCTCACCCGCAGTCGCCTGCGGATTAATCGCTCTGTGGATCTACAAGCTCA
TGCAGAAGCGCAAAAACAGGAAACAGGCCGAGTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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