© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|4499 |
| Gene name | |
| Location | Contig_229:19986..21102 |
| Strand | - |
| Gene length (bp) | 1116 |
| Transcript length (bp) | 1116 |
| Coding sequence length (bp) | 1116 |
| Protein length (aa) | 372 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03403 | PAF-AH_p_II | Platelet-activating factor acetylhydrolase, isoform II | 2.7E-05 | 90 | 158 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|D4AZY1|A1751_ARTBC | Probable 1-alkyl-2-acetylglycerophosphocholine esterase OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_01751 PE=1 SV=1 | 1 | 370 | 3.0E-71 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016042 | lipid catabolic process | Yes |
| GO:0003847 | 1-alkyl-2-acetylglycerophosphocholine esterase activity | Yes |
| GO:1901575 | organic substance catabolic process | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0052689 | carboxylic ester hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0008150 | biological_process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0009056 | catabolic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1532 | 0.0686 | 0.9575 | 0.1 | 0.1476 | 0.0944 | 0.3115 | 0.4737 | 0.208 | 0.0081 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 17 | 0.999728 |
| Orthofinder run ID | 4 |
| Orthogroup | 4863 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4499 MLLVGALTLLLPATARALVLPPPPSPYVIQWRSRELVDESRRDAFNSSHPRRLMVSIFSPVPALSCSRVCHVPYM PPAIASVEDAVLDAYLGATSWPKSLLASLEMELCCQTRESHTVTTQAFPTLFLGTGLNTTRLLYSATAQHLASAG YQVIVMDHPYETDVVQFPDGGLVFGGRVGRNPNDTAAIVHGLDVRTRDLSFVLDALRVPAAVYIGQSFGGAAAAA AATSSSERRILGGVNLDGQLWGPVVRAGVCRPFLTIGAEGHTPASIPSWGAFFGAMDEKHPGVSAKLLNVQGTVH GSFLDFSLIGDVAGLRARDGLEAFIGKATGLRVMEILKAYSAAFADYILRGADSVLLRGPSPSFPEVSFIR* |
| Coding | >Hirsu2|4499 ATGCTGCTCGTCGGCGCCCTGACGCTTTTGCTCCCAGCAACGGCACGCGCCCTCGTTCTACCTCCTCCGCCGAGC CCGTATGTGATCCAGTGGCGGTCTCGGGAGCTCGTCGACGAAAGCCGGCGAGATGCCTTCAACTCGTCTCATCCC AGACGCTTGATGGTTTCCATATTCTCGCCCGTGCCCGCCCTCAGCTGCTCCAGAGTGTGCCATGTGCCGTACATG CCACCGGCCATCGCCTCCGTCGAGGATGCCGTCCTCGATGCCTATCTCGGTGCGACCAGCTGGCCCAAGAGCCTG CTCGCGAGCCTGGAGATGGAGCTCTGCTGCCAGACGCGTGAGAGTCACACCGTGACCACCCAAGCCTTTCCAACC CTCTTTCTCGGCACGGGGCTGAACACCACACGCCTTCTCTACTCGGCCACTGCTCAGCATCTGGCCAGCGCCGGC TATCAAGTCATTGTCATGGACCATCCATATGAGACGGATGTAGTTCAGTTCCCGGACGGCGGGCTCGTCTTTGGT GGCCGCGTGGGCCGAAACCCCAACGACACCGCGGCAATCGTTCATGGTCTCGACGTCCGCACGCGGGATCTATCC TTTGTCTTGGACGCCTTGCGCGTGCCAGCCGCCGTCTACATCGGCCAGTCGTTCGGCGGCGCCGCGGCGGCGGCT GCCGCCACCTCATCCAGCGAGCGCCGTATCTTGGGCGGCGTCAATCTCGACGGCCAGCTCTGGGGACCCGTCGTG CGCGCCGGCGTCTGCCGGCCCTTTCTCACCATCGGCGCCGAGGGCCACACCCCAGCTTCCATCCCGAGCTGGGGC GCCTTCTTCGGCGCCATGGATGAGAAGCACCCCGGCGTGTCGGCCAAATTGCTCAACGTTCAGGGCACCGTCCAC GGAAGTTTCCTCGACTTTTCCCTCATCGGCGACGTCGCCGGCCTGCGGGCGAGAGACGGTCTCGAGGCCTTCATC GGCAAGGCCACGGGACTCAGGGTTATGGAAATACTGAAGGCATACTCGGCCGCCTTCGCCGACTATATCCTGCGC GGCGCAGATTCGGTGCTTCTTCGCGGGCCGAGTCCGTCCTTCCCCGAGGTCTCGTTTATCAGGTAG |
| Transcript | >Hirsu2|4499 ATGCTGCTCGTCGGCGCCCTGACGCTTTTGCTCCCAGCAACGGCACGCGCCCTCGTTCTACCTCCTCCGCCGAGC CCGTATGTGATCCAGTGGCGGTCTCGGGAGCTCGTCGACGAAAGCCGGCGAGATGCCTTCAACTCGTCTCATCCC AGACGCTTGATGGTTTCCATATTCTCGCCCGTGCCCGCCCTCAGCTGCTCCAGAGTGTGCCATGTGCCGTACATG CCACCGGCCATCGCCTCCGTCGAGGATGCCGTCCTCGATGCCTATCTCGGTGCGACCAGCTGGCCCAAGAGCCTG CTCGCGAGCCTGGAGATGGAGCTCTGCTGCCAGACGCGTGAGAGTCACACCGTGACCACCCAAGCCTTTCCAACC CTCTTTCTCGGCACGGGGCTGAACACCACACGCCTTCTCTACTCGGCCACTGCTCAGCATCTGGCCAGCGCCGGC TATCAAGTCATTGTCATGGACCATCCATATGAGACGGATGTAGTTCAGTTCCCGGACGGCGGGCTCGTCTTTGGT GGCCGCGTGGGCCGAAACCCCAACGACACCGCGGCAATCGTTCATGGTCTCGACGTCCGCACGCGGGATCTATCC TTTGTCTTGGACGCCTTGCGCGTGCCAGCCGCCGTCTACATCGGCCAGTCGTTCGGCGGCGCCGCGGCGGCGGCT GCCGCCACCTCATCCAGCGAGCGCCGTATCTTGGGCGGCGTCAATCTCGACGGCCAGCTCTGGGGACCCGTCGTG CGCGCCGGCGTCTGCCGGCCCTTTCTCACCATCGGCGCCGAGGGCCACACCCCAGCTTCCATCCCGAGCTGGGGC GCCTTCTTCGGCGCCATGGATGAGAAGCACCCCGGCGTGTCGGCCAAATTGCTCAACGTTCAGGGCACCGTCCAC GGAAGTTTCCTCGACTTTTCCCTCATCGGCGACGTCGCCGGCCTGCGGGCGAGAGACGGTCTCGAGGCCTTCATC GGCAAGGCCACGGGACTCAGGGTTATGGAAATACTGAAGGCATACTCGGCCGCCTTCGCCGACTATATCCTGCGC GGCGCAGATTCGGTGCTTCTTCGCGGGCCGAGTCCGTCCTTCCCCGAGGTCTCGTTTATCAGGTAG |
| Gene | >Hirsu2|4499 ATGCTGCTCGTCGGCGCCCTGACGCTTTTGCTCCCAGCAACGGCACGCGCCCTCGTTCTACCTCCTCCGCCGAGC CCGTATGTGATCCAGTGGCGGTCTCGGGAGCTCGTCGACGAAAGCCGGCGAGATGCCTTCAACTCGTCTCATCCC AGACGCTTGATGGTTTCCATATTCTCGCCCGTGCCCGCCCTCAGCTGCTCCAGAGTGTGCCATGTGCCGTACATG CCACCGGCCATCGCCTCCGTCGAGGATGCCGTCCTCGATGCCTATCTCGGTGCGACCAGCTGGCCCAAGAGCCTG CTCGCGAGCCTGGAGATGGAGCTCTGCTGCCAGACGCGTGAGAGTCACACCGTGACCACCCAAGCCTTTCCAACC CTCTTTCTCGGCACGGGGCTGAACACCACACGCCTTCTCTACTCGGCCACTGCTCAGCATCTGGCCAGCGCCGGC TATCAAGTCATTGTCATGGACCATCCATATGAGACGGATGTAGTTCAGTTCCCGGACGGCGGGCTCGTCTTTGGT GGCCGCGTGGGCCGAAACCCCAACGACACCGCGGCAATCGTTCATGGTCTCGACGTCCGCACGCGGGATCTATCC TTTGTCTTGGACGCCTTGCGCGTGCCAGCCGCCGTCTACATCGGCCAGTCGTTCGGCGGCGCCGCGGCGGCGGCT GCCGCCACCTCATCCAGCGAGCGCCGTATCTTGGGCGGCGTCAATCTCGACGGCCAGCTCTGGGGACCCGTCGTG CGCGCCGGCGTCTGCCGGCCCTTTCTCACCATCGGCGCCGAGGGCCACACCCCAGCTTCCATCCCGAGCTGGGGC GCCTTCTTCGGCGCCATGGATGAGAAGCACCCCGGCGTGTCGGCCAAATTGCTCAACGTTCAGGGCACCGTCCAC GGAAGTTTCCTCGACTTTTCCCTCATCGGCGACGTCGCCGGCCTGCGGGCGAGAGACGGTCTCGAGGCCTTCATC GGCAAGGCCACGGGACTCAGGGTTATGGAAATACTGAAGGCATACTCGGCCGCCTTCGCCGACTATATCCTGCGC GGCGCAGATTCGGTGCTTCTTCGCGGGCCGAGTCCGTCCTTCCCCGAGGTCTCGTTTATCAGGTAG |