© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|4462 |
| Gene name | |
| Location | Contig_227:27594..28693 |
| Strand | + |
| Gene length (bp) | 1099 |
| Transcript length (bp) | 921 |
| Coding sequence length (bp) | 921 |
| Protein length (aa) | 307 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00024 | PAN_1 | PAN domain | 1.0E-04 | 49 | 95 |
| PF00024 | PAN_1 | PAN domain | 4.5E-06 | 182 | 219 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.2035 | 0.0405 | 0.9615 | 0.1751 | 0.0816 | 0.0253 | 0.2297 | 0.1729 | 0.3123 | 0.0005 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 24 | 0.999733 |
| Orthofinder run ID | 4 |
| Orthogroup | 4906 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4462 MKVISGSVLTAALLAADFAGLVAAQSYACPGNKGETIVRGGKKYELLCDKGFRGAAIEEKACDSLAECAERCAAN PKCVHGTLIGKSQKCALKAAGDAFDLAGLSTWKFVELAKETETKPPPPVDETQKPIGGGGGGGGSTVGQSSYSCP ADKNKKYTTNGITYELRCDTGHKVTHWTSDPCPSLKECADRCAKTAECYSCDYARSSKTCFLKKAPSETVPWTEG DAWFPAPCPDVRETEAKKEPEITSGLNCPSDNGKIWEGSDGTWFYLQCCTDTSAATVIEQGTASSHKDCLEKCVA NKKCRR* |
| Coding | >Hirsu2|4462 ATGAAGGTTATTAGCGGCTCGGTGTTGACGGCAGCACTGCTCGCGGCCGACTTTGCCGGGCTCGTTGCTGCTCAG AGTTATGCTTGCCCTGGGAACAAGGGCGAGACGATTGTCAGAGGCGGCAAGAAGTACGAGTTGCTATGCGACAAG GGCTTCCGGGGGGCGGCGATAGAGGAGAAGGCGTGTGACAGCCTGGCCGAGTGTGCCGAGAGATGCGCGGCGAAC CCTAAGTGCGTGCACGGCACTCTGATCGGGAAGAGCCAGAAGTGCGCGCTGAAGGCAGCCGGCGACGCGTTCGAC CTCGCCGGGCTCTCGACCTGGAAGTTCGTGGAGCTGGCCAAGGAGACGGAGACTAAGCCGCCGCCGCCAGTCGAC GAGACCCAGAAGCCCATCGGCGGCGGAGGTGGTGGCGGCGGCAGCACCGTCGGCCAGTCGTCGTACTCTTGCCCG GCGGACAAGAACAAGAAATACACGACCAACGGCATCACGTACGAGCTGCGCTGCGACACGGGCCACAAGGTCACG CACTGGACGAGCGACCCTTGCCCGTCGCTGAAGGAGTGCGCGGACCGCTGCGCCAAGACAGCCGAGTGCTACAGC TGCGACTACGCGCGCAGCAGCAAGACGTGCTTCCTCAAGAAGGCGCCGTCCGAGACGGTCCCCTGGACGGAGGGA GACGCCTGGTTCCCGGCCCCGTGCCCGGACGTCCGCGAGACCGAGGCCAAGAAGGAGCCGGAGATTACGTCCGGC CTCAACTGTCCATCCGACAACGGCAAGATCTGGGAGGGCTCGGATGGCACCTGGTTCTATCTCCAGTGCTGCACC GACACGAGCGCCGCGACTGTCATCGAGCAGGGGACCGCCTCCAGCCACAAGGACTGCCTTGAGAAGTGCGTCGCG AACAAGAAATGTCGAAGGTGA |
| Transcript | >Hirsu2|4462 ATGAAGGTTATTAGCGGCTCGGTGTTGACGGCAGCACTGCTCGCGGCCGACTTTGCCGGGCTCGTTGCTGCTCAG AGTTATGCTTGCCCTGGGAACAAGGGCGAGACGATTGTCAGAGGCGGCAAGAAGTACGAGTTGCTATGCGACAAG GGCTTCCGGGGGGCGGCGATAGAGGAGAAGGCGTGTGACAGCCTGGCCGAGTGTGCCGAGAGATGCGCGGCGAAC CCTAAGTGCGTGCACGGCACTCTGATCGGGAAGAGCCAGAAGTGCGCGCTGAAGGCAGCCGGCGACGCGTTCGAC CTCGCCGGGCTCTCGACCTGGAAGTTCGTGGAGCTGGCCAAGGAGACGGAGACTAAGCCGCCGCCGCCAGTCGAC GAGACCCAGAAGCCCATCGGCGGCGGAGGTGGTGGCGGCGGCAGCACCGTCGGCCAGTCGTCGTACTCTTGCCCG GCGGACAAGAACAAGAAATACACGACCAACGGCATCACGTACGAGCTGCGCTGCGACACGGGCCACAAGGTCACG CACTGGACGAGCGACCCTTGCCCGTCGCTGAAGGAGTGCGCGGACCGCTGCGCCAAGACAGCCGAGTGCTACAGC TGCGACTACGCGCGCAGCAGCAAGACGTGCTTCCTCAAGAAGGCGCCGTCCGAGACGGTCCCCTGGACGGAGGGA GACGCCTGGTTCCCGGCCCCGTGCCCGGACGTCCGCGAGACCGAGGCCAAGAAGGAGCCGGAGATTACGTCCGGC CTCAACTGTCCATCCGACAACGGCAAGATCTGGGAGGGCTCGGATGGCACCTGGTTCTATCTCCAGTGCTGCACC GACACGAGCGCCGCGACTGTCATCGAGCAGGGGACCGCCTCCAGCCACAAGGACTGCCTTGAGAAGTGCGTCGCG AACAAGAAATGTCGAAGGTGA |
| Gene | >Hirsu2|4462 ATGAAGGTTATTAGCGGCTCGGTGTTGACGGCAGCACTGCTCGCGGCCGACTTTGCCGGGCTCGTTGCTGCTCAG AGTTATGCTTGCCCTGGGAACAAGGGCGAGACGATTGTCAGGTACGCCTAGCTAAGAAGAGGACTGGGGACGATT CTGGTGAATACCGGGCGGCTGACGGGATGGCAGAGGCGGCAAGAAGTACGAGTTGCTATGCGACAAGGGCTTCCG GGGGGCGGCGATAGAGGAGAAGGCGTGTGACAGCCTGGCCGAGTGTGCCGAGAGATGCGCGGCGAACCCTAAGTG CGTGCACGGCACTCTGATCGGGAAGAGCCAGAAGTGCGCGCTGAAGGCAGCCGGCGACGCGTTCGACCTCGCCGG GCTCTCGACCTGGAAGTTCGTGGAGCTGGCCAAGGAGACGGAGACTAAGCCGCCGCCGCCAGTCGACGAGACCCA GAAGCCCATCGGCGGCGGAGGTGGTGGCGGCGGCAGCACCGTCGGCCAGTCGTCGTACTCTTGCCCGGCGGACAA GAACAAGAAATACACGACGTGAGCCTGCTCCGGTTCTGGCATGACGAGATTCACCTGCTGACTCGGAGTCTCAGC AACGGCATCACGTACGAGCTGCGCTGCGACACGGGCCACAAGGTCACGCACTGGACGAGCGACCCTTGCCCGTCG CTGAAGGAGTGCGCGGACCGCTGCGCCAAGACAGCCGAGTGCTACAGCTGCGACTACGCGCGCAGCAGCAAGACG TGCTTCCTCAAGAAGGCGCCGTCCGAGACGGTCCCCTGGACGGAGGGAGACGCCTGGTTCCCGGCCCCGTGCCCG GACGTCCGCGAGACCGAGGCCAAGAAGGAGCCGGAGATTACGTCCGGCCTCAACTGTCCATCCGGTAAGGCGAGC GGGCCGTGTGTTCGAGTCCACGGACTGACGGGGACGATGCGCAGACAACGGCAAGATCTGGGAGGGCTCGGATGG CACCTGGTTCTATCTCCAGTGCTGCACCGACACGAGCGCCGCGACTGTCATCGAGCAGGGGACCGCCTCCAGCCA CAAGGACTGCCTTGAGAAGTGCGTCGCGAACAAGAAATGTCGAAGGTGA |