Protein ID | Hirsu2|4462 |
Gene name | |
Location | Contig_227:27594..28693 |
Strand | + |
Gene length (bp) | 1099 |
Transcript length (bp) | 921 |
Coding sequence length (bp) | 921 |
Protein length (aa) | 307 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00024 | PAN_1 | PAN domain | 1.0E-04 | 49 | 95 |
PF00024 | PAN_1 | PAN domain | 4.5E-06 | 182 | 219 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.2035 | 0.0405 | 0.9615 | 0.1751 | 0.0816 | 0.0253 | 0.2297 | 0.1729 | 0.3123 | 0.0005 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 24 | 0.999733 |
Orthofinder run ID | 4 |
Orthogroup | 4906 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|4462 MKVISGSVLTAALLAADFAGLVAAQSYACPGNKGETIVRGGKKYELLCDKGFRGAAIEEKACDSLAECAERCAAN PKCVHGTLIGKSQKCALKAAGDAFDLAGLSTWKFVELAKETETKPPPPVDETQKPIGGGGGGGGSTVGQSSYSCP ADKNKKYTTNGITYELRCDTGHKVTHWTSDPCPSLKECADRCAKTAECYSCDYARSSKTCFLKKAPSETVPWTEG DAWFPAPCPDVRETEAKKEPEITSGLNCPSDNGKIWEGSDGTWFYLQCCTDTSAATVIEQGTASSHKDCLEKCVA NKKCRR* |
Coding | >Hirsu2|4462 ATGAAGGTTATTAGCGGCTCGGTGTTGACGGCAGCACTGCTCGCGGCCGACTTTGCCGGGCTCGTTGCTGCTCAG AGTTATGCTTGCCCTGGGAACAAGGGCGAGACGATTGTCAGAGGCGGCAAGAAGTACGAGTTGCTATGCGACAAG GGCTTCCGGGGGGCGGCGATAGAGGAGAAGGCGTGTGACAGCCTGGCCGAGTGTGCCGAGAGATGCGCGGCGAAC CCTAAGTGCGTGCACGGCACTCTGATCGGGAAGAGCCAGAAGTGCGCGCTGAAGGCAGCCGGCGACGCGTTCGAC CTCGCCGGGCTCTCGACCTGGAAGTTCGTGGAGCTGGCCAAGGAGACGGAGACTAAGCCGCCGCCGCCAGTCGAC GAGACCCAGAAGCCCATCGGCGGCGGAGGTGGTGGCGGCGGCAGCACCGTCGGCCAGTCGTCGTACTCTTGCCCG GCGGACAAGAACAAGAAATACACGACCAACGGCATCACGTACGAGCTGCGCTGCGACACGGGCCACAAGGTCACG CACTGGACGAGCGACCCTTGCCCGTCGCTGAAGGAGTGCGCGGACCGCTGCGCCAAGACAGCCGAGTGCTACAGC TGCGACTACGCGCGCAGCAGCAAGACGTGCTTCCTCAAGAAGGCGCCGTCCGAGACGGTCCCCTGGACGGAGGGA GACGCCTGGTTCCCGGCCCCGTGCCCGGACGTCCGCGAGACCGAGGCCAAGAAGGAGCCGGAGATTACGTCCGGC CTCAACTGTCCATCCGACAACGGCAAGATCTGGGAGGGCTCGGATGGCACCTGGTTCTATCTCCAGTGCTGCACC GACACGAGCGCCGCGACTGTCATCGAGCAGGGGACCGCCTCCAGCCACAAGGACTGCCTTGAGAAGTGCGTCGCG AACAAGAAATGTCGAAGGTGA |
Transcript | >Hirsu2|4462 ATGAAGGTTATTAGCGGCTCGGTGTTGACGGCAGCACTGCTCGCGGCCGACTTTGCCGGGCTCGTTGCTGCTCAG AGTTATGCTTGCCCTGGGAACAAGGGCGAGACGATTGTCAGAGGCGGCAAGAAGTACGAGTTGCTATGCGACAAG GGCTTCCGGGGGGCGGCGATAGAGGAGAAGGCGTGTGACAGCCTGGCCGAGTGTGCCGAGAGATGCGCGGCGAAC CCTAAGTGCGTGCACGGCACTCTGATCGGGAAGAGCCAGAAGTGCGCGCTGAAGGCAGCCGGCGACGCGTTCGAC CTCGCCGGGCTCTCGACCTGGAAGTTCGTGGAGCTGGCCAAGGAGACGGAGACTAAGCCGCCGCCGCCAGTCGAC GAGACCCAGAAGCCCATCGGCGGCGGAGGTGGTGGCGGCGGCAGCACCGTCGGCCAGTCGTCGTACTCTTGCCCG GCGGACAAGAACAAGAAATACACGACCAACGGCATCACGTACGAGCTGCGCTGCGACACGGGCCACAAGGTCACG CACTGGACGAGCGACCCTTGCCCGTCGCTGAAGGAGTGCGCGGACCGCTGCGCCAAGACAGCCGAGTGCTACAGC TGCGACTACGCGCGCAGCAGCAAGACGTGCTTCCTCAAGAAGGCGCCGTCCGAGACGGTCCCCTGGACGGAGGGA GACGCCTGGTTCCCGGCCCCGTGCCCGGACGTCCGCGAGACCGAGGCCAAGAAGGAGCCGGAGATTACGTCCGGC CTCAACTGTCCATCCGACAACGGCAAGATCTGGGAGGGCTCGGATGGCACCTGGTTCTATCTCCAGTGCTGCACC GACACGAGCGCCGCGACTGTCATCGAGCAGGGGACCGCCTCCAGCCACAAGGACTGCCTTGAGAAGTGCGTCGCG AACAAGAAATGTCGAAGGTGA |
Gene | >Hirsu2|4462 ATGAAGGTTATTAGCGGCTCGGTGTTGACGGCAGCACTGCTCGCGGCCGACTTTGCCGGGCTCGTTGCTGCTCAG AGTTATGCTTGCCCTGGGAACAAGGGCGAGACGATTGTCAGGTACGCCTAGCTAAGAAGAGGACTGGGGACGATT CTGGTGAATACCGGGCGGCTGACGGGATGGCAGAGGCGGCAAGAAGTACGAGTTGCTATGCGACAAGGGCTTCCG GGGGGCGGCGATAGAGGAGAAGGCGTGTGACAGCCTGGCCGAGTGTGCCGAGAGATGCGCGGCGAACCCTAAGTG CGTGCACGGCACTCTGATCGGGAAGAGCCAGAAGTGCGCGCTGAAGGCAGCCGGCGACGCGTTCGACCTCGCCGG GCTCTCGACCTGGAAGTTCGTGGAGCTGGCCAAGGAGACGGAGACTAAGCCGCCGCCGCCAGTCGACGAGACCCA GAAGCCCATCGGCGGCGGAGGTGGTGGCGGCGGCAGCACCGTCGGCCAGTCGTCGTACTCTTGCCCGGCGGACAA GAACAAGAAATACACGACGTGAGCCTGCTCCGGTTCTGGCATGACGAGATTCACCTGCTGACTCGGAGTCTCAGC AACGGCATCACGTACGAGCTGCGCTGCGACACGGGCCACAAGGTCACGCACTGGACGAGCGACCCTTGCCCGTCG CTGAAGGAGTGCGCGGACCGCTGCGCCAAGACAGCCGAGTGCTACAGCTGCGACTACGCGCGCAGCAGCAAGACG TGCTTCCTCAAGAAGGCGCCGTCCGAGACGGTCCCCTGGACGGAGGGAGACGCCTGGTTCCCGGCCCCGTGCCCG GACGTCCGCGAGACCGAGGCCAAGAAGGAGCCGGAGATTACGTCCGGCCTCAACTGTCCATCCGGTAAGGCGAGC GGGCCGTGTGTTCGAGTCCACGGACTGACGGGGACGATGCGCAGACAACGGCAAGATCTGGGAGGGCTCGGATGG CACCTGGTTCTATCTCCAGTGCTGCACCGACACGAGCGCCGCGACTGTCATCGAGCAGGGGACCGCCTCCAGCCA CAAGGACTGCCTTGAGAAGTGCGTCGCGAACAAGAAATGTCGAAGGTGA |