© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|4456 |
| Gene name | |
| Location | Contig_227:13659..14148 |
| Strand | - |
| Gene length (bp) | 489 |
| Transcript length (bp) | 489 |
| Coding sequence length (bp) | 489 |
| Protein length (aa) | 163 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.0863 | 0.0818 | 0.9031 | 0.0726 | 0.1151 | 0.0079 | 0.1536 | 0.1271 | 0.0328 | 0.0058 |
| Orthofinder run ID | 4 |
| Orthogroup | 7597 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps australis map64 (Brazil) | OphauB2|1464 |
| Ophiocordyceps subramaniannii | Hirsu2|4456 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4456 MKFSTTLASFLAGLATATRYDPYSDPDMAKMDRRVLDEDNYRNGMQALSTASFLYKRYALILYLQRVVFPGDIAP DTENNALIEQLHNNNEKRAEEAQKNMEIATEKLNTSFPEEFTRKLMSMTKQEEEKFKGFITYDLEENLRTLDHLE TAIGTMVRMQSH* |
| Coding | >Hirsu2|4456 ATGAAGTTTTCAACGACCCTCGCCTCTTTCCTGGCTGGCTTGGCTACAGCTACTCGTTACGACCCATATAGCGAT CCGGACATGGCCAAAATGGATCGTCGTGTCCTTGACGAGGATAACTATAGAAACGGGATGCAAGCGCTATCGACA GCATCCTTCCTTTATAAGCGTTATGCTCTCATCCTCTACCTTCAAAGAGTTGTGTTTCCCGGTGATATTGCTCCT GATACCGAGAACAACGCTCTTATTGAACAGCTTCATAATAATAATGAGAAGAGGGCCGAAGAGGCTCAGAAAAAC ATGGAAATTGCTACGGAGAAGCTTAACACGTCTTTTCCAGAGGAATTTACCAGGAAATTGATGTCGATGACGAAG CAGGAAGAAGAAAAATTCAAGGGTTTTATTACCTATGACTTAGAGGAAAACTTAAGGACGCTCGATCACCTTGAA ACCGCTATTGGCACAATGGTTAGGATGCAGAGTCACTAG |
| Transcript | >Hirsu2|4456 ATGAAGTTTTCAACGACCCTCGCCTCTTTCCTGGCTGGCTTGGCTACAGCTACTCGTTACGACCCATATAGCGAT CCGGACATGGCCAAAATGGATCGTCGTGTCCTTGACGAGGATAACTATAGAAACGGGATGCAAGCGCTATCGACA GCATCCTTCCTTTATAAGCGTTATGCTCTCATCCTCTACCTTCAAAGAGTTGTGTTTCCCGGTGATATTGCTCCT GATACCGAGAACAACGCTCTTATTGAACAGCTTCATAATAATAATGAGAAGAGGGCCGAAGAGGCTCAGAAAAAC ATGGAAATTGCTACGGAGAAGCTTAACACGTCTTTTCCAGAGGAATTTACCAGGAAATTGATGTCGATGACGAAG CAGGAAGAAGAAAAATTCAAGGGTTTTATTACCTATGACTTAGAGGAAAACTTAAGGACGCTCGATCACCTTGAA ACCGCTATTGGCACAATGGTTAGGATGCAGAGTCACTAG |
| Gene | >Hirsu2|4456 ATGAAGTTTTCAACGACCCTCGCCTCTTTCCTGGCTGGCTTGGCTACAGCTACTCGTTACGACCCATATAGCGAT CCGGACATGGCCAAAATGGATCGTCGTGTCCTTGACGAGGATAACTATAGAAACGGGATGCAAGCGCTATCGACA GCATCCTTCCTTTATAAGCGTTATGCTCTCATCCTCTACCTTCAAAGAGTTGTGTTTCCCGGTGATATTGCTCCT GATACCGAGAACAACGCTCTTATTGAACAGCTTCATAATAATAATGAGAAGAGGGCCGAAGAGGCTCAGAAAAAC ATGGAAATTGCTACGGAGAAGCTTAACACGTCTTTTCCAGAGGAATTTACCAGGAAATTGATGTCGATGACGAAG CAGGAAGAAGAAAAATTCAAGGGTTTTATTACCTATGACTTAGAGGAAAACTTAAGGACGCTCGATCACCTTGAA ACCGCTATTGGCACAATGGTTAGGATGCAGAGTCACTAG |