Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|4450
Gene name
LocationContig_2268:438..2873
Strand+
Gene length (bp)2435
Transcript length (bp)1968
Coding sequence length (bp)1968
Protein length (aa) 656

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00172 Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain 4.7E-06 52 85
PF00172 Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain 2.6E-08 115 152
PF04082 Fungal_trans Fungal specific transcription factor domain 7.1E-09 230 459

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q9HDX1|YKN4_SCHPO Uncharacterized transcriptional regulatory protein PB1A11.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB1A11.04c PE=3 SV=1 112 405 3.0E-08
sp|O59746|YN2B_SCHPO Uncharacterized transcriptional regulatory protein C530.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC530.11c PE=1 SV=1 169 556 3.0E-08

GO

GO Term Description Terminal node
GO:0005634 nucleus Yes
GO:0003677 DNA binding Yes
GO:0006351 transcription, DNA-templated Yes
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Yes
GO:0006355 regulation of transcription, DNA-templated Yes
GO:0008270 zinc ion binding Yes
GO:0010468 regulation of gene expression No
GO:0006807 nitrogen compound metabolic process No
GO:0019222 regulation of metabolic process No
GO:0071704 organic substance metabolic process No
GO:0032774 RNA biosynthetic process No
GO:0003676 nucleic acid binding No
GO:0016070 RNA metabolic process No
GO:0097659 nucleic acid-templated transcription No
GO:0097159 organic cyclic compound binding No
GO:0043170 macromolecule metabolic process No
GO:0044237 cellular metabolic process No
GO:0065007 biological regulation No
GO:0031323 regulation of cellular metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0050794 regulation of cellular process No
GO:0005488 binding No
GO:0044238 primary metabolic process No
GO:0046872 metal ion binding No
GO:0008152 metabolic process No
GO:0043169 cation binding No
GO:0008150 biological_process No
GO:0051252 regulation of RNA metabolic process No
GO:0044260 cellular macromolecule metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0009889 regulation of biosynthetic process No
GO:0010556 regulation of macromolecule biosynthetic process No
GO:0043226 organelle No
GO:0003674 molecular_function No
GO:0005575 cellular_component No
GO:0060255 regulation of macromolecule metabolic process No
GO:1901362 organic cyclic compound biosynthetic process No
GO:0050789 regulation of biological process No
GO:0090304 nucleic acid metabolic process No
GO:0044271 cellular nitrogen compound biosynthetic process No
GO:0044249 cellular biosynthetic process No
GO:0009059 macromolecule biosynthetic process No
GO:0034645 cellular macromolecule biosynthetic process No
GO:0051171 regulation of nitrogen compound metabolic process No
GO:0044424 intracellular part No
GO:0006725 cellular aromatic compound metabolic process No
GO:0018130 heterocycle biosynthetic process No
GO:0043167 ion binding No
GO:2001141 regulation of RNA biosynthetic process No
GO:1901363 heterocyclic compound binding No
GO:0009987 cellular process No
GO:0043227 membrane-bounded organelle No
GO:0019438 aromatic compound biosynthetic process No
GO:0043229 intracellular organelle No
GO:0009058 biosynthetic process No
GO:0034654 nucleobase-containing compound biosynthetic process No
GO:1903506 regulation of nucleic acid-templated transcription No
GO:0044464 cell part No
GO:1901576 organic substance biosynthetic process No
GO:0043231 intracellular membrane-bounded organelle No
GO:0019219 regulation of nucleobase-containing compound metabolic process No
GO:0080090 regulation of primary metabolic process No
GO:2000112 regulation of cellular macromolecule biosynthetic process No
GO:0140110 transcription regulator activity No
GO:0003700 DNA-binding transcription factor activity No
GO:0006139 nucleobase-containing compound metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0046914 transition metal ion binding No
GO:0031326 regulation of cellular biosynthetic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 47 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Fungal Specific TF

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|4450
MDPAAHDADGPAPLASAQNALASAPGAALPPSAPSPPPTKRRRTAPVLADCCRTCRLRKVKCSGNPGNGPCSNCA
RLELSCNFANAADQDETAVSRTTPSHSHTEAGTLRKRAQRACSQCHSHKTKCSGDLPRCKRCEAANLPCEYTPAK
RRFTNVRFQSSAKSAEPHPPAPSSSSARSDGVVSPTLSSSSGAGPVSLLVDTTNLNAEDLLARKDLILRHMEAYM
DNVYWLPSQGFVHPESVYRDIQDGTLDPVHAAGICAVASSFVNPTDAGREFAQKCSTHIELYLFQNVYKFSDDLL
ILFALNITFNVLQGSFAKVWQCFGIASRLMLGLRINWHVLPRGRSFIQQESLRRIGWHFFHMDRMLAGGYDEYIS
CRAENMRIPLPCDESAYRENRPVVAERLYDKPAQPPSTINLHAFQIRLIDLRHRIQVITKRLCSASGNNLQYVDA
SKIMSDINGLQNELTRFHSSLPTDVLLCDQSVSRYMAMPERPGYVFLHCHLAGCHIELYRFFLPGQKEKIPVEII
RKLPREFLARSQKQAVAHSMSFGRFCDAIQNEVDQMRDTGKQELAADYSTIQVGTACVRVLIAAIQYQLFRDISQ
ETTAPLWRLGKTDEPHLRFLIKSVQRVTEPWCGILNMAQQAVSNGPSSAPRPACC*
Coding >Hirsu2|4450
ATGGATCCGGCTGCCCACGACGCTGACGGGCCCGCGCCGCTCGCCTCCGCCCAAAACGCCCTCGCCTCCGCCCCC
GGAGCCGCCCTTCCTCCGTCGGCGCCCTCGCCCCCGCCCACCAAGCGTCGCCGCACCGCCCCCGTCCTGGCCGAC
TGCTGTCGGACCTGTCGATTGCGCAAGGTCAAATGCTCTGGCAATCCCGGCAACGGGCCCTGCTCCAATTGCGCC
CGCCTCGAGCTCTCCTGCAATTTCGCCAATGCCGCTGACCAGGACGAAACCGCGGTCTCGCGCACGACGCCCTCC
CACAGCCATACCGAGGCCGGCACCCTGAGGAAGAGGGCCCAGCGAGCCTGCAGCCAGTGCCACTCCCACAAGACC
AAGTGCTCCGGCGACCTGCCGCGCTGCAAGCGCTGCGAGGCCGCCAACCTGCCCTGCGAGTATACGCCCGCCAAG
CGCCGCTTCACCAATGTCCGCTTCCAGAGCTCCGCCAAGTCGGCCGAGCCGCATCCTCCCGCCCCGAGCTCCTCC
TCCGCCCGCTCCGACGGCGTCGTCAGTCCCACCCTCAGCAGCAGCAGCGGCGCCGGCCCCGTCTCTCTCCTCGTC
GACACCACAAACCTCAACGCCGAGGACCTCTTGGCCCGCAAGGACCTCATCTTGCGCCATATGGAGGCCTACATG
GATAATGTCTACTGGCTGCCCTCCCAGGGCTTCGTCCATCCCGAGTCCGTCTACCGGGACATTCAGGACGGCACG
CTCGACCCGGTCCACGCCGCCGGCATCTGCGCCGTCGCCAGCTCCTTCGTCAACCCGACTGACGCCGGCCGCGAG
TTCGCCCAAAAGTGCAGCACCCACATCGAGCTGTACCTGTTCCAGAACGTCTACAAGTTCTCCGACGACCTGCTC
ATCCTCTTCGCCCTCAACATCACCTTCAACGTCCTCCAAGGCTCCTTCGCAAAGGTCTGGCAGTGCTTCGGCATC
GCCTCCAGGCTCATGCTCGGCCTGCGCATCAACTGGCACGTCCTCCCCCGCGGCCGTTCCTTCATCCAGCAGGAG
TCGCTCCGCCGCATCGGCTGGCACTTCTTCCACATGGACCGCATGCTCGCCGGCGGCTACGACGAATACATCTCG
TGCCGCGCCGAGAACATGCGCATCCCCCTGCCCTGCGACGAGTCGGCCTACCGCGAGAACCGGCCCGTCGTGGCC
GAGAGGCTGTACGACAAGCCCGCCCAGCCGCCCAGCACCATCAACCTGCACGCCTTCCAGATCCGCCTCATCGAC
CTGAGGCATCGCATCCAAGTCATCACGAAGCGCCTCTGCTCGGCCTCGGGCAACAACCTGCAATACGTCGACGCC
TCCAAGATCATGTCCGACATCAACGGCCTGCAGAACGAGCTCACCCGCTTCCACTCATCCCTGCCCACCGACGTC
CTGCTGTGCGACCAGAGCGTCTCGCGCTACATGGCCATGCCCGAGCGCCCCGGCTACGTCTTCCTCCACTGCCAC
CTCGCCGGCTGCCACATCGAGCTCTATCGCTTCTTCCTCCCGGGCCAGAAGGAGAAGATCCCCGTAGAGATCATC
CGCAAGCTGCCCCGCGAGTTCCTGGCCCGCTCGCAGAAGCAGGCCGTGGCCCACTCCATGTCCTTCGGCCGCTTC
TGCGACGCCATCCAGAACGAGGTGGACCAGATGAGGGACACTGGCAAGCAGGAGCTGGCCGCCGACTACTCCACC
ATCCAGGTCGGCACCGCCTGCGTGCGCGTCCTCATCGCCGCCATCCAGTACCAGCTCTTCCGCGACATCAGCCAG
GAGACGACGGCGCCGCTGTGGCGCCTCGGCAAGACGGACGAGCCCCACCTGCGCTTCCTCATCAAGTCGGTCCAG
CGCGTGACGGAGCCGTGGTGCGGGATCCTCAACATGGCGCAGCAAGCGGTAAGCAACGGCCCGTCGTCCGCCCCG
CGCCCCGCGTGTTGCTGA
Transcript >Hirsu2|4450
ATGGATCCGGCTGCCCACGACGCTGACGGGCCCGCGCCGCTCGCCTCCGCCCAAAACGCCCTCGCCTCCGCCCCC
GGAGCCGCCCTTCCTCCGTCGGCGCCCTCGCCCCCGCCCACCAAGCGTCGCCGCACCGCCCCCGTCCTGGCCGAC
TGCTGTCGGACCTGTCGATTGCGCAAGGTCAAATGCTCTGGCAATCCCGGCAACGGGCCCTGCTCCAATTGCGCC
CGCCTCGAGCTCTCCTGCAATTTCGCCAATGCCGCTGACCAGGACGAAACCGCGGTCTCGCGCACGACGCCCTCC
CACAGCCATACCGAGGCCGGCACCCTGAGGAAGAGGGCCCAGCGAGCCTGCAGCCAGTGCCACTCCCACAAGACC
AAGTGCTCCGGCGACCTGCCGCGCTGCAAGCGCTGCGAGGCCGCCAACCTGCCCTGCGAGTATACGCCCGCCAAG
CGCCGCTTCACCAATGTCCGCTTCCAGAGCTCCGCCAAGTCGGCCGAGCCGCATCCTCCCGCCCCGAGCTCCTCC
TCCGCCCGCTCCGACGGCGTCGTCAGTCCCACCCTCAGCAGCAGCAGCGGCGCCGGCCCCGTCTCTCTCCTCGTC
GACACCACAAACCTCAACGCCGAGGACCTCTTGGCCCGCAAGGACCTCATCTTGCGCCATATGGAGGCCTACATG
GATAATGTCTACTGGCTGCCCTCCCAGGGCTTCGTCCATCCCGAGTCCGTCTACCGGGACATTCAGGACGGCACG
CTCGACCCGGTCCACGCCGCCGGCATCTGCGCCGTCGCCAGCTCCTTCGTCAACCCGACTGACGCCGGCCGCGAG
TTCGCCCAAAAGTGCAGCACCCACATCGAGCTGTACCTGTTCCAGAACGTCTACAAGTTCTCCGACGACCTGCTC
ATCCTCTTCGCCCTCAACATCACCTTCAACGTCCTCCAAGGCTCCTTCGCAAAGGTCTGGCAGTGCTTCGGCATC
GCCTCCAGGCTCATGCTCGGCCTGCGCATCAACTGGCACGTCCTCCCCCGCGGCCGTTCCTTCATCCAGCAGGAG
TCGCTCCGCCGCATCGGCTGGCACTTCTTCCACATGGACCGCATGCTCGCCGGCGGCTACGACGAATACATCTCG
TGCCGCGCCGAGAACATGCGCATCCCCCTGCCCTGCGACGAGTCGGCCTACCGCGAGAACCGGCCCGTCGTGGCC
GAGAGGCTGTACGACAAGCCCGCCCAGCCGCCCAGCACCATCAACCTGCACGCCTTCCAGATCCGCCTCATCGAC
CTGAGGCATCGCATCCAAGTCATCACGAAGCGCCTCTGCTCGGCCTCGGGCAACAACCTGCAATACGTCGACGCC
TCCAAGATCATGTCCGACATCAACGGCCTGCAGAACGAGCTCACCCGCTTCCACTCATCCCTGCCCACCGACGTC
CTGCTGTGCGACCAGAGCGTCTCGCGCTACATGGCCATGCCCGAGCGCCCCGGCTACGTCTTCCTCCACTGCCAC
CTCGCCGGCTGCCACATCGAGCTCTATCGCTTCTTCCTCCCGGGCCAGAAGGAGAAGATCCCCGTAGAGATCATC
CGCAAGCTGCCCCGCGAGTTCCTGGCCCGCTCGCAGAAGCAGGCCGTGGCCCACTCCATGTCCTTCGGCCGCTTC
TGCGACGCCATCCAGAACGAGGTGGACCAGATGAGGGACACTGGCAAGCAGGAGCTGGCCGCCGACTACTCCACC
ATCCAGGTCGGCACCGCCTGCGTGCGCGTCCTCATCGCCGCCATCCAGTACCAGCTCTTCCGCGACATCAGCCAG
GAGACGACGGCGCCGCTGTGGCGCCTCGGCAAGACGGACGAGCCCCACCTGCGCTTCCTCATCAAGTCGGTCCAG
CGCGTGACGGAGCCGTGGTGCGGGATCCTCAACATGGCGCAGCAAGCGGTAAGCAACGGCCCGTCGTCCGCCCCG
CGCCCCGCGTGTTGCTGA
Gene >Hirsu2|4450
ATGGATCCGGCTGCCCACGACGCTGACGGGCCCGCGCCGCTCGCCTCCGCCCAAAACGCCCTCGCCTCCGCCCCC
GGAGCCGCCCTTCCTCCGTCGGCGCCCTCGCCCCCGCCCACCAAGCGTCGCCGCACCGCCCCCGTCCTGGCCGAC
TGCTGTCGGACCTGTCGATTGCGCAAGGTGCGTCCCCCCCCGTCGCCGCACTCCGCCCCTCGCAGCCTCGGCCTC
GGCCGCCCTCGTCCTCTCCTCCTCGCATCAGCCACACCGCGCCCGCCACCCGCCATCTGCCGCCACCGCAGCCCA
CGCTGATCCACCAGAGTCCAGGTCAAATGCTCTGGCAATCCCGGCAACGGGCCCTGCTCCAATTGCGCCCGCCTC
GAGCTCTCCTGCAATTTCGCCAATGCCGCTGACCAGGACGAAACCGCGGGTAAGAAATGGCCCCCGCCCCCCGTC
CACCTCGAGCTGCCCCAGTTGACTCCTCAGTCTCGCGCACGACGCCCTCCCACAGCCATACCGAGGCCGGCACCC
TGAGGAAGAGGGCCCAGCGAGCCTGCAGCCAGTGCCACTCCCACAAGACCAAGTGCTCCGGCGACCTGCCGCGCT
GCAAGCGCTGCGAGGCCGCCAACCTGCCCTGCGAGTATACGCCCGCCAAGCGCCGCTTCACCAATGTCCGCTTCC
AGAGCTCCGCCAAGTCGGCCGAGCCGCATCCTCCCGCCCCGAGCTCCTCCTCCGCCCGCTCCGACGGCGTCGTCA
GTCCCACCCTCAGCAGCAGCAGCGGCGCCGGCCCCGTCTCTCTCCTCGTCGACACCACAAACCTCAACGCCGAGT
TCGTCCGCCGCTCCCTCCCGTCCTCCTCCTCCCGTCCCGCCCGCCGCCCGCTCGACCCGGCAACAGGCCCGGCTG
ACTTGACCGCCTCTGCAGGGACCTCTTGGCCCGCAAGGACCTCATCTTGCGCCATATGGAGGCCTACATGGATAA
TGTCTACTGGCTGCCCTCCCAGGGCTTCGTCCATCCCGAGTCCGTCTACCGGGACATTCAGGTCAGCAGGAACCA
CCGGCCTCGCCCGGCCTCGCAGCCCTCGTCCACCTGCTCCTCCCGCTGACCCCTTCTTCTTCTTCACGCAGGACG
GCACGCTCGACCCGGTCCACGCCGCCGGCATCTGCGCCGTCGCCAGCTCCTTCGTCAACCCGACTGACGCCGGCC
GCGAGTTCGCCCAAAAGTGCAGCACCCACATCGAGCTGTACCTGTTCCAGAACGTCTACAAGTTCTCCGACGACC
TGCTCATCCTCTTCGCCCTCAACATCACCTTCAACGTCCTCCAAGGCTCCTTCGCAAAGGTCTGGCAGTGCTTCG
GCATCGCCTCCAGGCTCATGCTCGGCCTGCGCATCAACTGGCACGTCCTCCCCCGCGGCCGTTCCTTCATCCAGC
AGGAGTCGCTCCGCCGCATCGGCTGGCACTTCTTCCACATGGACCGCATGCTCGCCGGCGGCTACGACGAATACA
TCTCGTGCCGCGCCGAGAACATGCGCATCCCCCTGCCCTGCGACGAGTCGGCCTACCGCGAGAACCGGCCCGTCG
TGGCCGAGAGGCTGTACGACAAGCCCGCCCAGCCGCCCAGCACCATCAACCTGCACGCCTTCCAGATCCGCCTCA
TCGACCTGAGGCATCGCATCCAAGTGTGAGTCGCTGCGCCAGCCACATCACTTGCCTCCCGCCGCCGCCGCTCGC
CGGCCCCGCGCGCGCGCTGACCGCCCGAGGTGACCAGCATCACGAAGCGCCTCTGCTCGGCCTCGGGCAACAACC
TGCAATACGTCGACGCCTCCAAGATCATGTCCGACATCAACGGCCTGCAGAACGAGCTCACCCGCTTCCACTCAT
CCCTGCCCACCGACGTCCTGCTGTGCGACCAGAGCGTCTCGCGCTACATGGCCATGCCCGAGCGCCCCGGCTACG
TCTTCCTCCACTGCCACCTCGCCGGCTGCCACATCGAGCTCTATCGCTTCTTCCTCCCGGGCCAGAAGGAGAAGA
TCCCCGTAGAGATCATCCGCAAGCTGCCCCGCGAGTTCCTGGCCCGCTCGCAGAAGCAGGCCGTGGCCCACTCCA
TGTCCTTCGGCCGCTTCTGCGACGCCATCCAGAACGAGGTGGACCAGATGAGGGACACTGGCAAGCAGGAGCTGG
CCGCCGACTACTCCACCATCCAGGTCGGCACCGCCTGCGTGCGCGTCCTCATCGCCGCCATCCAGTACCAGCTCT
TCCGCGACATCAGCCAGGAGACGACGGCGCCGCTGTGGCGCCTCGGCAAGACGGACGAGCCCCACCTGCGCTTCC
TCATCAAGTCGGTCCAGCGCGTGACGGAGCCGTGGTGCGGGATCCTCAACATGGCGCAGCAAGCGGTAAGCAACG
GCCCGTCGTCCGCCCCGCGCCCCGCGTGTTGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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