© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|44 |
| Gene name | |
| Location | Contig_1001:4392..6873 |
| Strand | + |
| Gene length (bp) | 2481 |
| Transcript length (bp) | 2349 |
| Coding sequence length (bp) | 2349 |
| Protein length (aa) | 783 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.5028 | 0.3163 | 0.0706 | 0.2154 | 0.4009 | 0.0532 | 0.3584 | 0.2191 | 0.3283 | 0.5837 |
| Orthofinder run ID | 4 |
| Orthogroup | 2763 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|44 MPGSPVRCSERRVLHERSLSELNRLQIRIVPYSPPRLSLDDPDPSTSQPKSGVDRSTPPLLTHHASPDTEEVSAS GGKHRAMQTFGQQEVMGHLRTAGFGTLSDCNADSGSHTPRSLTRYPLLPAPKSQSQPQSSELMPLRRRPKFGTPS QAEILLNSQSYSAYSATLSVRSARRSSIIPSSVHDASSADIPGGKGPNSPLTPVQGDPPPPPEPMSGSGDSGSGP SQWNHRFLGGLRKVCRRALGSNQTTLTRARELPSSNAPLSRLRIAIPNPPFSLSPYSMRESSQSDWSGFSQSHQT TCKVHAQGSSMAAEEGPLSESVATNQIPEFDHPNVESIGDTSTGPSVEGEPVDEREPNYLVHSASSTCSSFGLRT ELSRESLLVPPLQYSRSPGLQLNTSGTHRHDTLRNRSLSSGSSAIVEEATCSRLTEVTAVRVPERASRSIVMHQP HKLSSGSSRRASFRQTQWNPVLTTVTSNSEVGGASRSQYSPIPSSRRRRSLSAQSGGLFPASSSLNEGRARPGNA TDEQPVYPLPVYRRASDRDPNQIAGRLIHNQDEHGDGLADLEDLVHSSRSRLHSLLSSFSSDRNLQSSSSSCSSS LSRVSSIPAWARVYYGSGERRFLANKISSESLYSQFDRPSRASSMLSQSPSAERFAAVIQNPRRRPREAVPSDEL RNDMLAGSSVDAAPPVADICLPRRLREQTSSVWSPHLRRDKRALGYRLGESPSTVLSSSAATISRRNLQPILFVV GFVFPLGRSLMDYCIFSSASHEIEARHVTGAP* |
| Coding | >Hirsu2|44 ATGCCAGGCTCGCCAGTTCGCTGCTCAGAGCGCCGCGTTCTGCATGAGCGATCGCTTTCTGAGCTCAACAGGCTG CAGATTCGCATCGTCCCCTACAGTCCTCCTCGCCTCAGTCTAGATGACCCTGACCCATCCACTTCTCAGCCTAAA TCAGGTGTTGATCGCTCAACTCCCCCTCTTTTGACTCATCATGCCTCACCGGACACGGAAGAGGTAAGTGCCAGT GGCGGCAAACATAGGGCTATGCAAACGTTTGGCCAACAAGAGGTTATGGGCCATCTCCGCACTGCTGGGTTTGGA ACACTCTCGGACTGCAACGCTGATTCCGGATCTCATACGCCCCGGTCTCTGACGAGATATCCCCTCTTACCGGCG CCAAAGTCGCAGTCGCAGCCTCAGTCATCAGAATTGATGCCTTTACGGCGTCGGCCGAAATTTGGTACACCTTCC CAAGCGGAAATATTGCTCAACTCCCAATCCTACTCGGCATATTCTGCCACACTCTCAGTCAGATCGGCCCGACGG TCTTCGATCATTCCGAGCAGTGTCCACGATGCGTCTTCCGCTGACATCCCGGGCGGCAAAGGCCCTAACTCTCCT CTGACGCCCGTCCAAGGGGATCCTCCCCCCCCTCCGGAGCCAATGTCGGGCTCTGGAGACTCAGGTTCAGGCCCA TCCCAGTGGAATCATCGATTCCTAGGGGGACTGCGTAAAGTGTGCCGTCGTGCATTGGGCTCGAATCAAACGACT CTCACGAGGGCCCGGGAGCTTCCATCGTCAAACGCACCGTTGTCCCGTCTCCGAATAGCAATCCCAAATCCCCCA TTTAGCCTGTCTCCTTACAGCATGAGGGAGTCGAGTCAGTCTGACTGGTCAGGATTCAGCCAATCTCATCAAACG ACCTGCAAAGTACACGCTCAAGGTTCCTCCATGGCAGCTGAGGAGGGCCCTTTATCGGAGTCGGTTGCCACCAAC CAAATACCTGAATTCGATCATCCCAACGTGGAATCTATAGGCGACACTTCCACAGGCCCATCAGTAGAAGGCGAG CCGGTCGATGAACGCGAGCCCAACTACCTTGTTCACAGTGCTTCATCAACTTGCTCCAGCTTTGGACTGAGGACT GAGCTTTCGAGGGAAAGCTTACTCGTCCCGCCACTGCAGTACTCTCGTTCCCCAGGGTTGCAGCTCAACACGTCA GGTACACATCGTCACGATACACTTCGTAACAGATCTCTGAGTTCTGGCTCTAGCGCCATTGTCGAGGAAGCGACT TGCTCCAGGCTCACCGAAGTTACTGCCGTGAGGGTGCCCGAAAGGGCTTCGAGGTCCATAGTCATGCATCAACCT CACAAACTTTCTTCAGGCAGCAGTCGCCGGGCATCGTTTCGGCAAACCCAGTGGAACCCGGTCTTGACAACAGTC ACCTCAAATAGCGAAGTCGGAGGCGCGAGCCGATCACAGTACTCGCCCATACCCAGCAGCCGCCGTCGCCGAAGT CTAAGCGCACAATCAGGCGGCCTCTTTCCTGCGTCTTCAAGCCTCAATGAGGGACGCGCGAGGCCAGGCAATGCT ACCGACGAGCAACCCGTATATCCGTTGCCCGTATATCGAAGGGCCTCGGACCGGGACCCGAATCAAATCGCAGGA CGGTTAATCCATAACCAAGACGAGCATGGCGATGGCCTCGCGGATCTGGAGGATCTTGTTCATTCATCTCGCTCT CGACTGCATAGTCTATTGTCTAGCTTTTCCTCGGACCGAAACCTGCAATCGTCCAGCAGTTCCTGCAGCAGCAGC CTGAGTCGCGTCTCCTCCATTCCAGCATGGGCCAGAGTCTACTACGGCAGTGGCGAGCGTCGATTTCTTGCCAAC AAGATATCATCTGAGTCGCTGTACTCTCAGTTCGACCGTCCCTCAAGAGCCAGTTCGATGCTCAGCCAATCACCT AGTGCCGAGCGATTTGCCGCGGTTATCCAAAACCCTCGACGACGACCACGAGAAGCGGTCCCGTCTGACGAGCTT CGCAATGATATGCTGGCCGGCAGCTCTGTCGACGCAGCACCACCTGTCGCAGACATTTGTTTGCCTCGCAGACTT CGAGAACAGACTTCGAGTGTTTGGTCACCGCATCTGCGTCGAGATAAACGCGCGCTTGGTTACAGGCTTGGGGAG TCTCCCTCGACAGTGTTGTCTTCCAGTGCGGCAACCATCAGTCGCCGGAACCTTCAGCCTATTCTATTTGTAGTA GGTTTCGTTTTCCCACTCGGTAGGTCCCTCATGGATTATTGCATCTTTTCTTCCGCTTCCCATGAGATTGAAGCC CGACATGTTACAGGAGCACCATAG |
| Transcript | >Hirsu2|44 ATGCCAGGCTCGCCAGTTCGCTGCTCAGAGCGCCGCGTTCTGCATGAGCGATCGCTTTCTGAGCTCAACAGGCTG CAGATTCGCATCGTCCCCTACAGTCCTCCTCGCCTCAGTCTAGATGACCCTGACCCATCCACTTCTCAGCCTAAA TCAGGTGTTGATCGCTCAACTCCCCCTCTTTTGACTCATCATGCCTCACCGGACACGGAAGAGGTAAGTGCCAGT GGCGGCAAACATAGGGCTATGCAAACGTTTGGCCAACAAGAGGTTATGGGCCATCTCCGCACTGCTGGGTTTGGA ACACTCTCGGACTGCAACGCTGATTCCGGATCTCATACGCCCCGGTCTCTGACGAGATATCCCCTCTTACCGGCG CCAAAGTCGCAGTCGCAGCCTCAGTCATCAGAATTGATGCCTTTACGGCGTCGGCCGAAATTTGGTACACCTTCC CAAGCGGAAATATTGCTCAACTCCCAATCCTACTCGGCATATTCTGCCACACTCTCAGTCAGATCGGCCCGACGG TCTTCGATCATTCCGAGCAGTGTCCACGATGCGTCTTCCGCTGACATCCCGGGCGGCAAAGGCCCTAACTCTCCT CTGACGCCCGTCCAAGGGGATCCTCCCCCCCCTCCGGAGCCAATGTCGGGCTCTGGAGACTCAGGTTCAGGCCCA TCCCAGTGGAATCATCGATTCCTAGGGGGACTGCGTAAAGTGTGCCGTCGTGCATTGGGCTCGAATCAAACGACT CTCACGAGGGCCCGGGAGCTTCCATCGTCAAACGCACCGTTGTCCCGTCTCCGAATAGCAATCCCAAATCCCCCA TTTAGCCTGTCTCCTTACAGCATGAGGGAGTCGAGTCAGTCTGACTGGTCAGGATTCAGCCAATCTCATCAAACG ACCTGCAAAGTACACGCTCAAGGTTCCTCCATGGCAGCTGAGGAGGGCCCTTTATCGGAGTCGGTTGCCACCAAC CAAATACCTGAATTCGATCATCCCAACGTGGAATCTATAGGCGACACTTCCACAGGCCCATCAGTAGAAGGCGAG CCGGTCGATGAACGCGAGCCCAACTACCTTGTTCACAGTGCTTCATCAACTTGCTCCAGCTTTGGACTGAGGACT GAGCTTTCGAGGGAAAGCTTACTCGTCCCGCCACTGCAGTACTCTCGTTCCCCAGGGTTGCAGCTCAACACGTCA GGTACACATCGTCACGATACACTTCGTAACAGATCTCTGAGTTCTGGCTCTAGCGCCATTGTCGAGGAAGCGACT TGCTCCAGGCTCACCGAAGTTACTGCCGTGAGGGTGCCCGAAAGGGCTTCGAGGTCCATAGTCATGCATCAACCT CACAAACTTTCTTCAGGCAGCAGTCGCCGGGCATCGTTTCGGCAAACCCAGTGGAACCCGGTCTTGACAACAGTC ACCTCAAATAGCGAAGTCGGAGGCGCGAGCCGATCACAGTACTCGCCCATACCCAGCAGCCGCCGTCGCCGAAGT CTAAGCGCACAATCAGGCGGCCTCTTTCCTGCGTCTTCAAGCCTCAATGAGGGACGCGCGAGGCCAGGCAATGCT ACCGACGAGCAACCCGTATATCCGTTGCCCGTATATCGAAGGGCCTCGGACCGGGACCCGAATCAAATCGCAGGA CGGTTAATCCATAACCAAGACGAGCATGGCGATGGCCTCGCGGATCTGGAGGATCTTGTTCATTCATCTCGCTCT CGACTGCATAGTCTATTGTCTAGCTTTTCCTCGGACCGAAACCTGCAATCGTCCAGCAGTTCCTGCAGCAGCAGC CTGAGTCGCGTCTCCTCCATTCCAGCATGGGCCAGAGTCTACTACGGCAGTGGCGAGCGTCGATTTCTTGCCAAC AAGATATCATCTGAGTCGCTGTACTCTCAGTTCGACCGTCCCTCAAGAGCCAGTTCGATGCTCAGCCAATCACCT AGTGCCGAGCGATTTGCCGCGGTTATCCAAAACCCTCGACGACGACCACGAGAAGCGGTCCCGTCTGACGAGCTT CGCAATGATATGCTGGCCGGCAGCTCTGTCGACGCAGCACCACCTGTCGCAGACATTTGTTTGCCTCGCAGACTT CGAGAACAGACTTCGAGTGTTTGGTCACCGCATCTGCGTCGAGATAAACGCGCGCTTGGTTACAGGCTTGGGGAG TCTCCCTCGACAGTGTTGTCTTCCAGTGCGGCAACCATCAGTCGCCGGAACCTTCAGCCTATTCTATTTGTAGTA GGTTTCGTTTTCCCACTCGGTAGGTCCCTCATGGATTATTGCATCTTTTCTTCCGCTTCCCATGAGATTGAAGCC CGACATGTTACAGGAGCACCATAG |
| Gene | >Hirsu2|44 ATGCCAGGCTCGCCAGTTCGCTGCTCAGAGCGCCGCGTTCTGCATGAGCGATCGCTTTCTGAGCTCAACAGGCTG CAGATTCGCATCGTCCCCTACAGTCCTCCTCGCCTCAGTCTAGATGACCCTGACCCATCCACTTCTCAGCCTAAA TCAGGTGTTGATCGCTCAACTCCCCCTCTTTTGACTCATCATGCCTCACCGGACACGGAAGAGGTAAGTGCCAGT GGCGGCAAACATAGGGCTATGCAAACGTTTGGCCAACAAGAGGTTATGGGCCATCTCCGCACTGCTGGGTTTGGA ACACTCTCGGACTGCAACGCTGATTCCGGATCTCATACGCCCCGGTCTCTGACGAGATATCCCCTCTTACCGGCG CCAAAGTCGCAGTCGCAGCCTCAGTCATCAGAATTGATGCCTTTACGGCGTCGGCCGAAATTTGGTACACCTTCC CAAGCGGAAATATTGCTCAACTCCCAATCCTACTCGGCATATTCTGCCACACTCTCAGTCAGATCGGCCCGACGG TCTTCGATCATTCCGAGCAGTGTCCACGATGCGTCTTCCGCTGACATCCCGGGCGGCAAAGGCCCTAACTCTCCT CTGACGCCCGTCCAAGGGGATCCTCCCCCCCCTCCGGAGCCAATGTCGGGCTCTGGAGACTCAGGTTCAGGCCCA TCCCAGTGGAATCATCGATTCCTAGGGGGACTGCGTAAAGTGTGCCGTCGTGCATTGGGCTCGAATCAAACGACT CTCACGAGGGCCCGGGAGCTTCCATCGTCAAACGCACCGTTGTCCCGTCTCCGAATAGCAATCCCAAATCCCCCA TTTAGCCTGTCTCCTTACAGCATGAGGGAGTCGAGTCAGTCTGACTGGTCAGGATTCAGCCAATCTCATCAAACG ACCTGCAAAGTACACGCTCAAGGTTCCTCCATGGCAGCTGAGGAGGGCCCTTTATCGGAGTCGGTTGCCACCAAC CAAATACCTGAATTCGATCATCCCAACGTGGAATCTATAGGCGACACTTCCACAGGCCCATCAGTAGAAGGCGAG CCGGTCGATGAACGCGAGCCCAACTACCTTGTTCACAGTGCTTCATCAACTTGCTCCAGCTTTGGACTGAGGACT GAGCTTTCGAGGGAAAGCTTACTCGTCCCGCCACTGCAGTACTCTCGTTCCCCAGGGTTGCAGCTCAACACGTCA GGTACACATCGTCACGATACACTTCGTAACAGATCTCTGAGTTCTGGCTCTAGCGCCATTGTCGAGGAAGCGACT TGCTCCAGGCTCACCGAAGTTACTGCCGTGAGGGTGCCCGAAAGGGCTTCGAGGTCCATAGTCATGCATCAACCT CACAAACTTTCTTCAGGCAGCAGTCGCCGGGCATCGTTTCGGCAAACCCAGTGGAACCCGGTCTTGACAACAGTC ACCTCAAATAGCGAAGTCGGAGGCGCGAGCCGATCACAGTACTCGCCCATACCCAGCAGCCGCCGTCGCCGAAGT CTAAGCGCACAATCAGGCGGCCTCTTTCCTGCGTCTTCAAGCCTCAATGAGGGACGCGCGAGGCCAGGCAATGCT ACCGACGAGCAACCCGTATATCCGTTGCCCGTATATCGAAGGGCCTCGGACCGGGACCCGAATCAAATCGCAGGA CGGTTAATCCATAACCAAGACGAGCATGGCGATGGCCTCGCGGATCTGGAGGATCTTGTTCATTCATCTCGCTCT CGACTGCATAGTCTATTGTCTAGCTTTTCCTCGGACCGAAACCTGCAATCGTCCAGCAGTTCCTGCAGCAGCAGC CTGAGTCGCGTCTCCTCCATTCCAGCATGGGCCAGGTACGAGGAGCCGAAGAGCATTCATGAACGAGTGCGTGGA ATCAGACGTTTGCTCATTACTAACGGAATTGCAGAGTCTACTACGGCAGTGGCGAGCGTCGATTTCTTGCCAACA AGATATCATCTGAGTCGCTGTACTCTCAGTTCGACCGTCCCTCAAGAGCCAGTTCGATGCTCAGCCAATCACCTA GTGCCGAGCGATTTGCCGCGGTTATCCAAAACCCTCGACGACGACCACGAGAAGCGGTCCCGTCTGACGAGCTTC GCAATGATATGCTGGCCGGCAGCTCTGTCGACGCAGCACCACCTGTCGCAGACATTTGTTTGCCTCGCAGACTTC GAGAACAGACTTCGAGTGTTTGGTCACCGCATCTGCGTCGAGATAAACGCGCGCTTGGTTACAGGCTTGGGGAGT CTCCCTCGACAGTGTTGTCTTCCAGTGCGGCAACCATCAGTCGCCGGAACCTTCAGCCTATTCTATTTGTAGTAG GTTTCGTTTTCCCACTCGGTAGGTCCCTGTAAGCGTCAAAACTGGCATTTCTGTCGGCTCGGAAACTGATCAATT TGTCGACATAGCATGGATTATTGCATCTTTTCTTCCGCTTCCCATGAGATTGAAGCCCGACATGTTACAGGAGCA CCATAG |