© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|4364 |
| Gene name | |
| Location | Contig_2229:92..1072 |
| Strand | - |
| Gene length (bp) | 980 |
| Transcript length (bp) | 915 |
| Coding sequence length (bp) | 915 |
| Protein length (aa) | 305 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04479 | RTA1 | RTA1 like protein | 7.2E-64 | 70 | 277 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|C8ZI10|RSB1_YEAS8 | Sphingoid long-chain base transporter RSB1 OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=RSB1 PE=3 SV=1 | 32 | 281 | 3.0E-28 |
| sp|B3LJA1|RSB1_YEAS1 | Sphingoid long-chain base transporter RSB1 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RSB1 PE=3 SV=2 | 32 | 281 | 9.0E-28 |
| sp|Q08417|RSB1_YEAST | Sphingoid long-chain base transporter RSB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSB1 PE=1 SV=3 | 32 | 281 | 1.0E-27 |
| sp|A6ZNQ4|RSB1_YEAS7 | Sphingoid long-chain base transporter RSB1 OS=Saccharomyces cerevisiae (strain YJM789) GN=RSB1 PE=3 SV=2 | 32 | 281 | 1.0E-27 |
| sp|B5VRU8|RSB1_YEAS6 | Sphingoid long-chain base transporter RSB1 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=RSB1 PE=3 SV=1 | 32 | 281 | 1.0E-27 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|C8ZI10|RSB1_YEAS8 | Sphingoid long-chain base transporter RSB1 OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=RSB1 PE=3 SV=1 | 32 | 281 | 3.0E-28 |
| sp|B3LJA1|RSB1_YEAS1 | Sphingoid long-chain base transporter RSB1 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RSB1 PE=3 SV=2 | 32 | 281 | 9.0E-28 |
| sp|Q08417|RSB1_YEAST | Sphingoid long-chain base transporter RSB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSB1 PE=1 SV=3 | 32 | 281 | 1.0E-27 |
| sp|A6ZNQ4|RSB1_YEAS7 | Sphingoid long-chain base transporter RSB1 OS=Saccharomyces cerevisiae (strain YJM789) GN=RSB1 PE=3 SV=2 | 32 | 281 | 1.0E-27 |
| sp|B5VRU8|RSB1_YEAS6 | Sphingoid long-chain base transporter RSB1 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=RSB1 PE=3 SV=1 | 32 | 281 | 1.0E-27 |
| sp|C7GLH7|RSB1_YEAS2 | Sphingoid long-chain base transporter RSB1 OS=Saccharomyces cerevisiae (strain JAY291) GN=RSB1 PE=3 SV=2 | 32 | 276 | 2.0E-27 |
| sp|O13780|YEO2_SCHPO | Uncharacterized protein C17G6.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17G6.02c PE=4 SV=1 | 31 | 302 | 2.0E-19 |
| sp|P40113|RTM1_YEASX | Protein RTM1 OS=Saccharomyces cerevisiae GN=RTM1 PE=3 SV=1 | 70 | 270 | 3.0E-13 |
| sp|P53047|RTA1_YEAST | Protein RTA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTA1 PE=1 SV=1 | 28 | 261 | 1.0E-10 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 39 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 37 | 59 | 22 |
| 2 | 64 | 86 | 22 |
| 3 | 96 | 118 | 22 |
| 4 | 138 | 160 | 22 |
| 5 | 175 | 197 | 22 |
| 6 | 210 | 232 | 22 |
| 7 | 252 | 274 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4364 MSARQLPPGVKTFGPNANCTLDTCPAEWSIYGLRPSLAANTTFLVLFALIGIVHTYLGFRWRSWGFMGGMMLGCL NEIIGYAGRIMLWYNPFSFVGFMVQIICLTIAPVFYTASIYVTLSKAIVHFAPDLSRFRPQLFYWIFIPFDVVCL ILQAVGGALSTRSGGRNQAGVNVSMAGLALQVIILTAFIAVFADYMVRYLRSGRLSGFGWRLNGFFLGLTAAILL ILARCAYRVAELRDGYHGALIREEVPFIVLEGVFIVLAGFALCLGHPGLVFGRGVARKGSGAEWEGSESGTGTGT PERK* |
| Coding | >Hirsu2|4364 ATGTCGGCGAGGCAGCTCCCGCCCGGCGTCAAGACGTTCGGCCCCAACGCCAACTGCACGCTCGACACGTGTCCC GCCGAATGGAGCATCTACGGGCTGCGGCCGTCGCTGGCGGCCAACACGACCTTCCTCGTGCTCTTCGCCCTCATC GGCATCGTCCACACCTACCTCGGCTTCCGGTGGAGGAGCTGGGGCTTCATGGGCGGCATGATGCTCGGCTGCCTC AACGAGATCATCGGCTACGCCGGCCGCATCATGCTGTGGTATAACCCGTTTTCCTTTGTCGGGTTCATGGTCCAG ATCATCTGCCTGACGATCGCGCCCGTCTTCTACACGGCCTCGATCTACGTGACGCTGTCCAAGGCCATCGTGCAC TTCGCGCCGGACCTGTCGCGCTTCCGGCCGCAGCTCTTCTACTGGATCTTCATCCCCTTCGACGTCGTCTGCCTC ATCCTGCAGGCCGTGGGCGGCGCGCTGTCGACGCGGTCGGGCGGGCGCAACCAGGCGGGCGTCAACGTGTCCATG GCCGGGCTGGCGCTGCAGGTCATCATCCTGACGGCCTTCATCGCCGTCTTCGCCGACTACATGGTGCGCTACCTG CGCTCGGGCCGGCTGTCGGGCTTCGGCTGGCGCCTCAACGGCTTCTTCCTCGGCCTGACGGCCGCCATCCTGCTG ATCCTGGCCCGCTGCGCCTACCGCGTGGCCGAGCTGCGCGACGGCTACCACGGCGCCCTGATCCGCGAGGAGGTG CCGTTCATCGTGCTCGAGGGCGTCTTCATCGTCCTGGCCGGCTTCGCCCTGTGCCTCGGCCACCCGGGCCTGGTC TTTGGCCGCGGCGTCGCCCGCAAGGGCTCCGGCGCCGAGTGGGAGGGGAGCGAGAGCGGCACGGGCACGGGCACG CCGGAGCGCAAGTAG |
| Transcript | >Hirsu2|4364 ATGTCGGCGAGGCAGCTCCCGCCCGGCGTCAAGACGTTCGGCCCCAACGCCAACTGCACGCTCGACACGTGTCCC GCCGAATGGAGCATCTACGGGCTGCGGCCGTCGCTGGCGGCCAACACGACCTTCCTCGTGCTCTTCGCCCTCATC GGCATCGTCCACACCTACCTCGGCTTCCGGTGGAGGAGCTGGGGCTTCATGGGCGGCATGATGCTCGGCTGCCTC AACGAGATCATCGGCTACGCCGGCCGCATCATGCTGTGGTATAACCCGTTTTCCTTTGTCGGGTTCATGGTCCAG ATCATCTGCCTGACGATCGCGCCCGTCTTCTACACGGCCTCGATCTACGTGACGCTGTCCAAGGCCATCGTGCAC TTCGCGCCGGACCTGTCGCGCTTCCGGCCGCAGCTCTTCTACTGGATCTTCATCCCCTTCGACGTCGTCTGCCTC ATCCTGCAGGCCGTGGGCGGCGCGCTGTCGACGCGGTCGGGCGGGCGCAACCAGGCGGGCGTCAACGTGTCCATG GCCGGGCTGGCGCTGCAGGTCATCATCCTGACGGCCTTCATCGCCGTCTTCGCCGACTACATGGTGCGCTACCTG CGCTCGGGCCGGCTGTCGGGCTTCGGCTGGCGCCTCAACGGCTTCTTCCTCGGCCTGACGGCCGCCATCCTGCTG ATCCTGGCCCGCTGCGCCTACCGCGTGGCCGAGCTGCGCGACGGCTACCACGGCGCCCTGATCCGCGAGGAGGTG CCGTTCATCGTGCTCGAGGGCGTCTTCATCGTCCTGGCCGGCTTCGCCCTGTGCCTCGGCCACCCGGGCCTGGTC TTTGGCCGCGGCGTCGCCCGCAAGGGCTCCGGCGCCGAGTGGGAGGGGAGCGAGAGCGGCACGGGCACGGGCACG CCGGAGCGCAAGTAG |
| Gene | >Hirsu2|4364 ATGTCGGCGAGGCAGCTCCCGCCCGGCGTCAAGACGTTCGGCCCCAACGCCAACTGCACGCTCGACACGTGTCCC GCCGAATGGAGCATCTACGGGCTGCGGCCGTCGCTGGCGGCCAACACGACCTTCCTCGTGCTCTTCGCCCTCATC GGCATCGTCCACACCTACCTCGGCTTCCGGTGGAGGAGCTGGGGCTTCATGGGCGGCATGATGCTCGGCTGCCTC AACGAGATCATCGGCTACGCCGGCCGCATCATGCTGTGGTATAACCCGTTTTCCTTTGTCGGGTTCATGGTCCAG ATCAGTGAGTCCCCCCCCCCTCTTTCCCTCCTCCCCGCGCCGTGCCGCGACTAACGAACCGGCCGGCAGTCTGCC TGACGATCGCGCCCGTCTTCTACACGGCCTCGATCTACGTGACGCTGTCCAAGGCCATCGTGCACTTCGCGCCGG ACCTGTCGCGCTTCCGGCCGCAGCTCTTCTACTGGATCTTCATCCCCTTCGACGTCGTCTGCCTCATCCTGCAGG CCGTGGGCGGCGCGCTGTCGACGCGGTCGGGCGGGCGCAACCAGGCGGGCGTCAACGTGTCCATGGCCGGGCTGG CGCTGCAGGTCATCATCCTGACGGCCTTCATCGCCGTCTTCGCCGACTACATGGTGCGCTACCTGCGCTCGGGCC GGCTGTCGGGCTTCGGCTGGCGCCTCAACGGCTTCTTCCTCGGCCTGACGGCCGCCATCCTGCTGATCCTGGCCC GCTGCGCCTACCGCGTGGCCGAGCTGCGCGACGGCTACCACGGCGCCCTGATCCGCGAGGAGGTGCCGTTCATCG TGCTCGAGGGCGTCTTCATCGTCCTGGCCGGCTTCGCCCTGTGCCTCGGCCACCCGGGCCTGGTCTTTGGCCGCG GCGTCGCCCGCAAGGGCTCCGGCGCCGAGTGGGAGGGGAGCGAGAGCGGCACGGGCACGGGCACGCCGGAGCGCA AGTAG |