Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|4336
Gene name
LocationContig_2213:602..1313
Strand+
Gene length (bp)711
Transcript length (bp)576
Coding sequence length (bp)576
Protein length (aa) 192

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03159 XRN_N XRN 5'-3' exonuclease N-terminus 5.1E-71 1 167

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q4HWE2|XRN2_GIBZE 5'-3' exoribonuclease 2 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=RAT1 PE=3 SV=3 1 177 7.0E-99
sp|Q2GNZ6|XRN2_CHAGB 5'-3' exoribonuclease 2 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=RAT1 PE=3 SV=3 1 177 6.0E-92
sp|Q8WZX5|XRN2_NEUCR 5'-3' exoribonuclease 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=exr-1 PE=3 SV=3 1 175 1.0E-89
sp|Q8TFZ1|XRN2_ASPFU 5'-3' exoribonuclease 2 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rat1 PE=3 SV=4 1 177 8.0E-89
sp|Q5BFH3|XRN2_EMENI 5'-3' exoribonuclease 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rat1 PE=3 SV=3 1 175 7.0E-88
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Swissprot ID Swissprot Description Start End E-value
sp|Q4HWE2|XRN2_GIBZE 5'-3' exoribonuclease 2 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=RAT1 PE=3 SV=3 1 177 7.0E-99
sp|Q2GNZ6|XRN2_CHAGB 5'-3' exoribonuclease 2 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=RAT1 PE=3 SV=3 1 177 6.0E-92
sp|Q8WZX5|XRN2_NEUCR 5'-3' exoribonuclease 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=exr-1 PE=3 SV=3 1 175 1.0E-89
sp|Q8TFZ1|XRN2_ASPFU 5'-3' exoribonuclease 2 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rat1 PE=3 SV=4 1 177 8.0E-89
sp|Q5BFH3|XRN2_EMENI 5'-3' exoribonuclease 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rat1 PE=3 SV=3 1 175 7.0E-88
sp|Q2UCP5|XRN2_ASPOR 5'-3' exoribonuclease 2 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=rat1 PE=3 SV=3 1 177 7.0E-84
sp|Q74ZA0|XRN2_ASHGO 5'-3' exoribonuclease 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RAT1 PE=3 SV=4 1 184 1.0E-73
sp|Q6BNU7|XRN2_DEBHA 5'-3' exoribonuclease 2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RAT1 PE=3 SV=4 1 175 1.0E-73
sp|Q6CKX0|XRN2_KLULA 5'-3' exoribonuclease 2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RAT1 PE=3 SV=3 1 170 9.0E-73
sp|Q6FKN6|XRN2_CANGA 5'-3' exoribonuclease 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RAT1 PE=3 SV=3 1 175 2.0E-72
sp|Q4P149|XRN2_USTMA 5'-3' exoribonuclease 2 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=RAT1 PE=3 SV=3 1 177 3.0E-72
sp|Q5AMG5|XRN2_CANAL 5'-3' exoribonuclease 2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RAT1 PE=3 SV=3 1 175 1.0E-71
sp|P0CL89|XRN2_CRYNB 5'-3' exoribonuclease 2 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=RAT1 PE=3 SV=1 1 175 5.0E-71
sp|P0CL88|XRN2_CRYNJ 5'-3' exoribonuclease 2 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=RAT1 PE=3 SV=1 1 175 6.0E-71
sp|Q02792|XRN2_YEAST 5'-3' exoribonuclease 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAT1 PE=1 SV=3 1 175 9.0E-71
sp|P40848|XRN2_SCHPO 5'-3' exoribonuclease 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dhp1 PE=1 SV=1 1 178 2.0E-67
sp|Q6C961|XRN2_YARLI 5'-3' exoribonuclease 2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RAT1 PE=3 SV=3 1 188 1.0E-65
sp|Q5ZIP4|XRN2_CHICK 5'-3' exoribonuclease 2 OS=Gallus gallus GN=XRN2 PE=2 SV=1 1 169 7.0E-63
sp|Q9H0D6|XRN2_HUMAN 5'-3' exoribonuclease 2 OS=Homo sapiens GN=XRN2 PE=1 SV=1 1 168 3.0E-61
sp|Q5R4L5|XRN2_PONAB 5'-3' exoribonuclease 2 OS=Pongo abelii GN=XRN2 PE=2 SV=1 1 168 3.0E-61
sp|Q9DBR1|XRN2_MOUSE 5'-3' exoribonuclease 2 OS=Mus musculus GN=Xrn2 PE=1 SV=1 1 168 3.0E-61
sp|Q9VM71|XRN2_DROME 5'-3' exoribonuclease 2 homolog OS=Drosophila melanogaster GN=Rat1 PE=1 SV=2 1 170 1.0E-59
sp|Q9FQ02|XRN2_ARATH 5'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN=XRN2 PE=2 SV=1 1 184 4.0E-59
sp|Q60SG7|XRN2_CAEBR 5'-3' exoribonuclease 2 homolog OS=Caenorhabditis briggsae GN=xrn-2 PE=3 SV=2 1 169 4.0E-55
sp|Q9FQ03|XRN3_ARATH 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1 1 186 6.0E-55
sp|Q9FQ04|XRN4_ARATH 5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1 1 171 7.0E-55
sp|Q9U299|XRN2_CAEEL 5'-3' exoribonuclease 2 homolog OS=Caenorhabditis elegans GN=xrn-2 PE=1 SV=2 1 169 2.0E-54
sp|P40383|XRN1_SCHPO 5'-3' exoribonuclease 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=exo2 PE=1 SV=1 2 171 2.0E-50
sp|P97789|XRN1_MOUSE 5'-3' exoribonuclease 1 OS=Mus musculus GN=Xrn1 PE=1 SV=1 1 178 3.0E-50
sp|Q8IZH2|XRN1_HUMAN 5'-3' exoribonuclease 1 OS=Homo sapiens GN=XRN1 PE=1 SV=1 1 171 4.0E-50
sp|P22147|XRN1_YEAST 5'-3' exoribonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=XRN1 PE=1 SV=1 2 171 2.0E-48
sp|Q9QSK5|EXON_IIV6 Putative exonuclease 012L OS=Invertebrate iridescent virus 6 GN=IIV6-012L PE=3 SV=1 8 168 3.0E-17
sp|Q197A1|EX0N_IIV3 Putative exonuclease 059L OS=Invertebrate iridescent virus 3 GN=IIV3-059L PE=3 SV=1 1 169 3.0E-15
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GO

GO Term Description Terminal node
GO:0003676 nucleic acid binding Yes
GO:0004527 exonuclease activity Yes
GO:0016788 hydrolase activity, acting on ester bonds No
GO:1901363 heterocyclic compound binding No
GO:0097159 organic cyclic compound binding No
GO:0003674 molecular_function No
GO:0004518 nuclease activity No
GO:0003824 catalytic activity No
GO:0005488 binding No
GO:0016787 hydrolase activity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|4336
MVRPRRVLMIAVDGVAPRAKMNQQRSRRFRSAQEAKEKEADKQELLKLLTKQNGAKLNPEHDGQAKEAFDSNSIT
PGTPFMDILAVSLRYWCQYKLNTDPGWGKLKVIISDATVPGEGEHKIMSFIRSQRASSNHNPNTRHVIYGLDADL
IMLGLATHEPHFRVLREDVFFQEGKIKKRTGSSMRKPLSSL*
Coding >Hirsu2|4336
ATGGTTCGTCCCCGTAGAGTGTTGATGATTGCCGTCGATGGCGTGGCGCCTCGTGCCAAAATGAATCAACAGCGG
TCCAGACGGTTCCGATCTGCCCAGGAGGCCAAGGAAAAGGAGGCGGATAAGCAAGAATTACTGAAGCTATTGACG
AAGCAGAACGGCGCAAAATTGAACCCGGAACATGACGGGCAAGCCAAGGAGGCCTTCGACTCCAACTCCATTACC
CCGGGTACACCGTTTATGGACATTCTCGCCGTCAGTCTTCGTTACTGGTGTCAGTACAAACTCAATACCGACCCT
GGCTGGGGCAAGCTCAAAGTGATCATCTCCGATGCCACCGTCCCCGGAGAGGGCGAGCACAAAATCATGTCCTTC
ATCCGTTCACAACGGGCATCGTCCAATCATAACCCGAACACAAGGCATGTCATCTATGGTCTCGATGCCGACCTG
ATAATGCTAGGACTGGCGACCCACGAGCCTCACTTTCGAGTGCTGCGCGAAGACGTCTTTTTCCAGGAAGGCAAG
ATAAAGAAAAGAACGGGGAGTTCGATGAGAAAGCCGCTGTCCAGCCTGTGA
Transcript >Hirsu2|4336
ATGGTTCGTCCCCGTAGAGTGTTGATGATTGCCGTCGATGGCGTGGCGCCTCGTGCCAAAATGAATCAACAGCGG
TCCAGACGGTTCCGATCTGCCCAGGAGGCCAAGGAAAAGGAGGCGGATAAGCAAGAATTACTGAAGCTATTGACG
AAGCAGAACGGCGCAAAATTGAACCCGGAACATGACGGGCAAGCCAAGGAGGCCTTCGACTCCAACTCCATTACC
CCGGGTACACCGTTTATGGACATTCTCGCCGTCAGTCTTCGTTACTGGTGTCAGTACAAACTCAATACCGACCCT
GGCTGGGGCAAGCTCAAAGTGATCATCTCCGATGCCACCGTCCCCGGAGAGGGCGAGCACAAAATCATGTCCTTC
ATCCGTTCACAACGGGCATCGTCCAATCATAACCCGAACACAAGGCATGTCATCTATGGTCTCGATGCCGACCTG
ATAATGCTAGGACTGGCGACCCACGAGCCTCACTTTCGAGTGCTGCGCGAAGACGTCTTTTTCCAGGAAGGCAAG
ATAAAGAAAAGAACGGGGAGTTCGATGAGAAAGCCGCTGTCCAGCCTGTGA
Gene >Hirsu2|4336
ATGGTTCGTCCCCGTAGAGTGTTGATGATTGCCGTCGGTATGTCCTTCACCACTTAAAACCCTACGTGAGGAATT
TTCTGCTGTCCGCAGTCGTCGCTGACTGACCTTTAGATGGCGTGGCGCCTCGTGCCAAAATGAATCAACAGCGGT
CCAGACGGTTCCGATCTGCCCAGGAGGCCAAGGAAAAGGAGGCGGATAAGCAAGAATTACTGAAGCTATTGACGA
AGCAGAACGGCGCAAAATTGAACCCGGAACATGACGGGCAAGCCAAGGAGGCCTTCGACTCCAACTCCATTACCC
CGGGTACACCGTTTATGGACATTCTCGCCGTCAGTCTTCGTTACTGGTGTCAGTACAAACTCAATACCGACCCTG
GCTGGGGCAAGCTCAAAGTGATCATCTCCGATGCCACCGTCCCCGGAGAGGGCGAGCACAAAATCATGTCCTTCA
TCCGTTCACAACGGGCATCGTCCAATCATAACCCGAACACAAGGCATGTCATCTATGGTCTCGATGCCGACCTGA
TAATGCTAGGACTGGCGACCCACGAGCCTCACTTTCGAGTGCTGCGCGAAGACGTCTTTTTCCAGGAAGGCAAGT
CAAGGACTTGTAAACTTTGTGGGCAGAGGGGCCACGAAGCTCCCAACTGTCGCGGCCAGGATAAAGAAAAGAACG
GGGAGTTCGATGAGAAAGCCGCTGTCCAGCCTGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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