Fungal Genomics

at Utrecht University

General Properties

Protein ID	Hirsu2\|4321
Gene name
Location	Contig_2206:1473..3256
Strand	+
Gene length (bp)	1783
Transcript length (bp)	1662
Coding sequence length (bp)	1662
Protein length (aa)	554

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF05183	RdRP	RNA dependent RNA polymerase	5.3E-25	449	537

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9LQV2\|RDR1_ARATH	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1	442	537	1.0E-14
sp\|O82504\|RDR2_ARATH	RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=1 SV=1	446	537	3.0E-12
sp\|Q8LHH9\|SHL2_ORYSJ	Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica GN=SHL2 PE=2 SV=1	444	537	6.0E-11
sp\|Q0DXS3\|RDR1_ORYSJ	Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 PE=2 SV=2	452	537	3.0E-10
sp\|Q9SG02\|RDR6_ARATH	RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1 SV=1	448	537	2.0E-09

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9LQV2\|RDR1_ARATH	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1	442	537	1.0E-14
sp\|O82504\|RDR2_ARATH	RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=1 SV=1	446	537	3.0E-12
sp\|Q8LHH9\|SHL2_ORYSJ	Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica GN=SHL2 PE=2 SV=1	444	537	6.0E-11
sp\|Q0DXS3\|RDR1_ORYSJ	Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 PE=2 SV=2	452	537	3.0E-10
sp\|Q9SG02\|RDR6_ARATH	RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1 SV=1	448	537	2.0E-09
sp\|Q7XM31\|RDR2_ORYSJ	Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 PE=2 SV=1	444	537	1.0E-07

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GO

GO Term	Description	Terminal node
GO:0003968	RNA-directed 5'-3' RNA polymerase activity	Yes
GO:0140098	catalytic activity, acting on RNA	No
GO:0034062	5'-3' RNA polymerase activity	No
GO:0097747	RNA polymerase activity	No
GO:0016740	transferase activity	No
GO:0003674	molecular_function	No
GO:0016779	nucleotidyltransferase activity	No
GO:0003824	catalytic activity	No
GO:0016772	transferase activity, transferring phosphorus-containing groups	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 55	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2\|4321 MDVFLRNVPLDLAEGSLRKELKPVMNVLGVVDWDCSKSRRKNFAFVSFLQLADGERFLAKHGAVAAAAAPPPDPS SAAATFKSLPFLGARPRQLARLHILSLPVYASRSRRPIDRQTLSALERDHDVRQQQQQQQQQQRGAGAASVRCPL LDVACGKMVFAGPSGADLVFAHQTGLRARAQLRFGRRNLSAVFDDDGDRMDVPYDILVDLVADHATKALTLVLSE PPRFYARLPEPPDPRRGGHVRWERVAALPRWADHDRYVAHCLVYQLWLGPAHDEAVRSLRQLDLVAVSRHRVLLE PRPEPFVHDYGTAVGRFNGRIQSPDVNRLVPFALLFQVQLLVWNNYLHPSGALAVLDVLERAAKTTEATAATATA AKRDFPFKADSMKLLLPKIPYPVPGTEPASLDPTRLMETAARLEMERYREDLHRRGVYGPPLPGHQTWVFKAMVT PTRILLQGPDAESKNRVLRMFPDHGDHFLRVSFCDEDGQDLPFNPKVSNEAALERYRRVLRDGIHIAGRRFSFLG FSHSSLRSHSTWPSPRRPTPSTWSAAGS*
Coding	>Hirsu2\|4321 ATGGACGTCTTCCTGCGCAATGTCCCCCTCGACCTGGCCGAGGGCAGCCTCCGCAAGGAGCTCAAGCCGGTGATG AACGTGCTAGGCGTCGTCGACTGGGACTGCTCCAAGAGCCGGCGCAAGAACTTCGCCTTCGTCTCCTTCCTCCAG CTGGCCGACGGCGAACGGTTCCTGGCCAAGCACGGGGCCGTGGCGGCGGCGGCGGCGCCCCCGCCCGACCCGTCC TCCGCCGCCGCCACCTTCAAGAGCCTGCCGTTCCTCGGCGCCCGGCCGCGGCAGCTGGCCCGGCTGCACATCCTG TCGCTGCCCGTCTACGCCAGCCGCAGCCGGCGGCCCATCGACCGCCAGACGCTCAGCGCGCTCGAGCGCGACCAC GACGTGCGCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGCGGCGCCGGCGCCGCCTCCGTCCGCTGCCCCCTC CTCGACGTGGCCTGCGGCAAGATGGTCTTCGCCGGCCCGTCCGGCGCCGACCTCGTCTTCGCCCACCAGACCGGC CTCCGGGCCCGGGCCCAGCTGCGGTTCGGCCGGCGCAACCTGTCGGCCGTCTTCGACGACGACGGCGACCGCATG GACGTGCCGTACGACATCCTCGTCGACCTCGTCGCCGACCACGCCACCAAGGCCCTGACGCTGGTCCTGAGCGAG CCGCCGCGCTTCTACGCCCGCCTGCCGGAGCCGCCGGACCCGCGCCGCGGCGGCCACGTCCGGTGGGAGCGCGTC GCCGCCCTGCCGCGCTGGGCCGACCACGACCGCTACGTCGCCCACTGCCTCGTCTACCAGCTGTGGCTCGGCCCG GCCCACGACGAGGCCGTCCGCAGCCTGCGCCAGCTGGACCTCGTCGCCGTCAGCCGGCACCGCGTCCTGCTGGAG CCGCGGCCGGAGCCGTTCGTGCACGACTACGGCACCGCCGTCGGCCGCTTCAACGGCCGGATCCAGAGCCCGGAC GTCAACCGGCTCGTGCCCTTCGCCCTGCTCTTCCAGGTCCAGCTGCTGGTGTGGAACAACTACCTGCACCCGTCG GGCGCGCTGGCCGTGCTCGACGTGCTCGAGCGGGCGGCCAAGACGACGGAGGCGACGGCGGCGACGGCGACGGCC GCCAAGCGCGACTTCCCCTTCAAGGCCGACTCGATGAAGCTGCTGCTGCCCAAGATCCCGTACCCGGTCCCCGGC ACGGAGCCGGCCAGCCTGGACCCGACGCGCCTGATGGAGACGGCCGCCCGGCTGGAGATGGAGCGGTACCGCGAG GACCTGCACCGGCGCGGCGTCTACGGGCCGCCGCTGCCGGGCCACCAGACCTGGGTCTTCAAGGCCATGGTGACG CCGACGCGGATCCTGCTGCAGGGCCCGGACGCCGAGAGCAAGAACCGGGTGCTGCGCATGTTCCCCGACCACGGC GACCACTTCCTGCGCGTCTCCTTCTGCGACGAGGACGGCCAGGACCTGCCCTTCAACCCAAAGGTCTCCAACGAG GCGGCCCTGGAGCGGTACCGGCGCGTGCTGCGCGACGGCATCCACATCGCCGGCCGGCGCTTCTCCTTCCTCGGC TTCTCGCACTCGTCGCTGCGCTCGCACTCGACCTGGCCTTCTCCGAGACGCCCTACGCCGTCGACCTGGTCCGCA GCCGGATCCTGA
Transcript	>Hirsu2\|4321 ATGGACGTCTTCCTGCGCAATGTCCCCCTCGACCTGGCCGAGGGCAGCCTCCGCAAGGAGCTCAAGCCGGTGATG AACGTGCTAGGCGTCGTCGACTGGGACTGCTCCAAGAGCCGGCGCAAGAACTTCGCCTTCGTCTCCTTCCTCCAG CTGGCCGACGGCGAACGGTTCCTGGCCAAGCACGGGGCCGTGGCGGCGGCGGCGGCGCCCCCGCCCGACCCGTCC TCCGCCGCCGCCACCTTCAAGAGCCTGCCGTTCCTCGGCGCCCGGCCGCGGCAGCTGGCCCGGCTGCACATCCTG TCGCTGCCCGTCTACGCCAGCCGCAGCCGGCGGCCCATCGACCGCCAGACGCTCAGCGCGCTCGAGCGCGACCAC GACGTGCGCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGCGGCGCCGGCGCCGCCTCCGTCCGCTGCCCCCTC CTCGACGTGGCCTGCGGCAAGATGGTCTTCGCCGGCCCGTCCGGCGCCGACCTCGTCTTCGCCCACCAGACCGGC CTCCGGGCCCGGGCCCAGCTGCGGTTCGGCCGGCGCAACCTGTCGGCCGTCTTCGACGACGACGGCGACCGCATG GACGTGCCGTACGACATCCTCGTCGACCTCGTCGCCGACCACGCCACCAAGGCCCTGACGCTGGTCCTGAGCGAG CCGCCGCGCTTCTACGCCCGCCTGCCGGAGCCGCCGGACCCGCGCCGCGGCGGCCACGTCCGGTGGGAGCGCGTC GCCGCCCTGCCGCGCTGGGCCGACCACGACCGCTACGTCGCCCACTGCCTCGTCTACCAGCTGTGGCTCGGCCCG GCCCACGACGAGGCCGTCCGCAGCCTGCGCCAGCTGGACCTCGTCGCCGTCAGCCGGCACCGCGTCCTGCTGGAG CCGCGGCCGGAGCCGTTCGTGCACGACTACGGCACCGCCGTCGGCCGCTTCAACGGCCGGATCCAGAGCCCGGAC GTCAACCGGCTCGTGCCCTTCGCCCTGCTCTTCCAGGTCCAGCTGCTGGTGTGGAACAACTACCTGCACCCGTCG GGCGCGCTGGCCGTGCTCGACGTGCTCGAGCGGGCGGCCAAGACGACGGAGGCGACGGCGGCGACGGCGACGGCC GCCAAGCGCGACTTCCCCTTCAAGGCCGACTCGATGAAGCTGCTGCTGCCCAAGATCCCGTACCCGGTCCCCGGC ACGGAGCCGGCCAGCCTGGACCCGACGCGCCTGATGGAGACGGCCGCCCGGCTGGAGATGGAGCGGTACCGCGAG GACCTGCACCGGCGCGGCGTCTACGGGCCGCCGCTGCCGGGCCACCAGACCTGGGTCTTCAAGGCCATGGTGACG CCGACGCGGATCCTGCTGCAGGGCCCGGACGCCGAGAGCAAGAACCGGGTGCTGCGCATGTTCCCCGACCACGGC GACCACTTCCTGCGCGTCTCCTTCTGCGACGAGGACGGCCAGGACCTGCCCTTCAACCCAAAGGTCTCCAACGAG GCGGCCCTGGAGCGGTACCGGCGCGTGCTGCGCGACGGCATCCACATCGCCGGCCGGCGCTTCTCCTTCCTCGGC TTCTCGCACTCGTCGCTGCGCTCGCACTCGACCTGGCCTTCTCCGAGACGCCCTACGCCGTCGACCTGGTCCGCA GCCGGATCCTGA
Gene	>Hirsu2\|4321 ATGGACGTCTTCCTGCGCAATGTCCCCCTCGACCTGGCCGAGGGCAGCCTCCGCAAGGAGCTCAAGCCGGTGATG AACGTGCTAGGCGTCGTCGACTGGGACTGCTCCAAGAGCCGGCGCAAGAACTTCGCCTTCGTCTCCTTCCTCCAG CTGGCCGACGGCGAACGGTTCCTGGCCAAGCACGGGGCCGTGGCGGCGGCGGCGGCGCCCCCGCCCGACCCGTCC TCCGCCGCCGCCACCTTCAAGAGCCTGCCGTTCCTCGGCGCCCGGCCGCGGCAGCTGGCCCGGCTGCACATCCTG TCGCTGCCCGTCTACGCCAGCCGCAGCCGGCGGCCCATCGACCGCCAGACGCTCAGCGCGCTCGAGCGCGACCAC GACGTGCGCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGCGGCGCCGGCGCCGCCTCCGTCCGCTGCCCCCTC CTCGACGTGGCCTGCGGCAAGATGGTCTTCGCCGGCCCGTCCGGCGCCGACCTCGTCTTCGCCCACCAGACCGGC CTCCGGGCCCGGGCCCAGCTGCGGTTCGGCCGGCGCAACCTGTCGGCCGTCTTCGACGACGACGGCGACCGCATG GACGTGCCGTACGACATCCTCGTCGACCTCGTCGCCGACCACGCCACCAAGGCCCTGACGCTGGTCCTGAGCGAG CCGCCGCGCTTCTACGCCCGCCTGCCGGAGCCGCCGGACCCGCGCCGCGGCGGCCACGTCCGGTGGGAGCGCGTC GCCGCCCTGCCGCGCTGGGCCGACCACGACCGCTACGTCGCCCACTGCCTCGTCTACCAGCTGTGGCTCGGCCCG GCCCACGACGAGGCCGTCCGCAGCCTGCGCCAGCTGGACCTCGTCGCCGTCAGCCGGCACCGCGTCCTGCTGGAG CCGCGGCCGGAGCCGTTCGTGCACGACTACGGCACCGCCGTCGGCCGCTTCAACGGCCGGATCCAGAGCCCGGAC GTCAACCGGCTCGTGCCCTTCGCCCTGCTCTTCCAGGTCCAGCTGCTGGTGTGGAACAACTACCTGCACCCGTCG GGCGCGCTGGCCGTGCTCGACGTGCTCGAGCGGGCGGCCAAGACGACGGAGGCGACGGCGGCGACGGCGACGGCC GCCAAGCGCGACTTCCCCTTCAAGGCCGACTCGATGAAGCTGCTGCTGCCCAAGATCCCGTACCCGGTCCCCGGC ACGGAGCCGGCCAGCCTGGACCCGACGCGCCTGATGGAGACGGCCGCCCGGCTGGAGATGGAGCGGTACCGCGAG GACCTGCACCGGCGCGGCGTCTACGGGCCGCCGCTGCCGGGCCACCAGACCTGGGTCTTCAAGGCCATGGTGACG CCGACGCGGATCCTGCTGCAGGGCCCGGACGCCGAGAGCAAGAACCGGGTGCTGCGCATGTTCCCCGACCACGGC GACCACTTCCTGCGCGTCTCCTTCTGCGACGAGGACGGCCAGGACCTGCCCTTCAACCCAAAGGTCTCCAACGAG GCGGCCCTGGAGCGGTACCGGCGCGTGCTGCGCGACGGCATCCACATCGCCGGCCGGCGCTTCTCCTTCCTCGGC TTCTCGCACTCGTCGCTGCGCTCGCACTCGACCTGGTTCCTGGCGCCCTTCGTCGACGGCGACATGCGGCGCCAC GACTACGACAGCATCCTGCGCTCGCTCGGCGACTTCAGCGAGATCCGCAGCGCCGCCCGGTGCGCGGCCCGCATC GGCCAGGCCTTCTCCGAGACGCCCTACGCCGTCGACCTGGTCCGCAGCCGGATCCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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