© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|4272 |
| Gene name | |
| Location | Contig_2192:567..1636 |
| Strand | + |
| Gene length (bp) | 1069 |
| Transcript length (bp) | 1011 |
| Coding sequence length (bp) | 1011 |
| Protein length (aa) | 337 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02602 | HEM4 | Uroporphyrinogen-III synthase HemD | 2.4E-31 | 44 | 323 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P87214|HEM4_SCHPO | Uroporphyrinogen-III synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ups1 PE=3 SV=1 | 15 | 326 | 2.0E-27 |
| sp|P06174|HEM4_YEAST | Uroporphyrinogen-III synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HEM4 PE=1 SV=2 | 12 | 331 | 2.0E-20 |
| sp|P10746|HEM4_HUMAN | Uroporphyrinogen-III synthase OS=Homo sapiens GN=UROS PE=1 SV=1 | 79 | 329 | 1.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0033014 | tetrapyrrole biosynthetic process | Yes |
| GO:0004852 | uroporphyrinogen-III synthase activity | Yes |
| GO:0016835 | carbon-oxygen lyase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0016829 | lyase activity | No |
| GO:0016836 | hydro-lyase activity | No |
| GO:0008152 | metabolic process | No |
| GO:0033013 | tetrapyrrole metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0019438 | aromatic compound biosynthetic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:1901566 | organonitrogen compound biosynthetic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0003824 | catalytic activity | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0018130 | heterocycle biosynthetic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0009987 | cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4272 MALSGSREPNVVPVLLLKTRSSPHDPYEDLFLSSDAAGGPRFAPRFVPVLSHRLEAKGTARLATLLQHRQIGPAA DSAFGGLILTSQRAVEALAKIVADGKDCDLGAPSSIDSPCTPSKPRCVCRPCDHNWPHLQDVPVYSVGPATARAL AAVRLRVPLQVFGQHCGNGEALSHFILGHYAKWYSHRPTRPPLLFLVGEQRRDVIPRTLMDTARPVHERITVDEE VVYGTAVMESFPNDFADALRKTKDAPCRWVVVFSPTGCDSMLCSLGILDPTTGCAESGWGDGTTFIATIGPTTKA YMAKTFNFEPDVCANTPTPSGVLQAIQEHMRWPPRT* |
| Coding | >Hirsu2|4272 ATGGCGCTGTCCGGAAGCCGCGAGCCAAACGTCGTTCCCGTCCTACTGCTCAAGACGCGGTCCTCCCCGCACGAT CCTTATGAAGACCTCTTCCTTTCCTCTGACGCTGCCGGCGGACCTCGCTTCGCTCCGCGTTTTGTGCCGGTGCTC TCCCACCGCCTCGAGGCTAAAGGCACGGCAAGACTCGCCACCTTGCTACAGCACCGTCAAATCGGCCCGGCCGCT GACAGCGCCTTTGGAGGCCTCATTCTCACGTCGCAGCGGGCCGTCGAGGCATTGGCCAAGATAGTGGCGGACGGG AAAGATTGTGACTTGGGCGCGCCATCATCAATCGACTCGCCTTGTACTCCCTCCAAGCCACGTTGTGTTTGCCGT CCGTGCGACCACAACTGGCCACATCTTCAGGACGTACCCGTCTATAGCGTCGGCCCTGCCACAGCGCGCGCGCTC GCAGCCGTGCGGCTCCGAGTGCCGCTGCAAGTCTTCGGCCAGCACTGCGGTAATGGTGAGGCGCTCAGCCACTTC ATTCTCGGCCATTACGCGAAGTGGTATAGCCATCGCCCAACGCGCCCGCCCTTATTGTTCCTCGTCGGCGAACAA CGCAGAGATGTCATCCCCCGCACCCTCATGGACACTGCTCGTCCTGTCCACGAGCGTATCACAGTCGATGAGGAG GTTGTCTACGGTACTGCTGTCATGGAATCCTTCCCGAACGACTTTGCCGACGCCCTTCGCAAGACCAAAGACGCT CCTTGTCGGTGGGTCGTCGTCTTCTCTCCAACTGGATGCGACAGCATGCTCTGTAGTCTTGGCATTCTGGACCCC ACCACAGGCTGTGCTGAATCTGGCTGGGGGGATGGCACGACATTCATAGCCACTATTGGCCCAACGACCAAAGCT TACATGGCCAAGACGTTCAACTTCGAGCCCGATGTTTGCGCCAACACGCCGACGCCGTCAGGGGTTCTTCAAGCC ATCCAAGAGCATATGCGTTGGCCTCCGAGAACTTAG |
| Transcript | >Hirsu2|4272 ATGGCGCTGTCCGGAAGCCGCGAGCCAAACGTCGTTCCCGTCCTACTGCTCAAGACGCGGTCCTCCCCGCACGAT CCTTATGAAGACCTCTTCCTTTCCTCTGACGCTGCCGGCGGACCTCGCTTCGCTCCGCGTTTTGTGCCGGTGCTC TCCCACCGCCTCGAGGCTAAAGGCACGGCAAGACTCGCCACCTTGCTACAGCACCGTCAAATCGGCCCGGCCGCT GACAGCGCCTTTGGAGGCCTCATTCTCACGTCGCAGCGGGCCGTCGAGGCATTGGCCAAGATAGTGGCGGACGGG AAAGATTGTGACTTGGGCGCGCCATCATCAATCGACTCGCCTTGTACTCCCTCCAAGCCACGTTGTGTTTGCCGT CCGTGCGACCACAACTGGCCACATCTTCAGGACGTACCCGTCTATAGCGTCGGCCCTGCCACAGCGCGCGCGCTC GCAGCCGTGCGGCTCCGAGTGCCGCTGCAAGTCTTCGGCCAGCACTGCGGTAATGGTGAGGCGCTCAGCCACTTC ATTCTCGGCCATTACGCGAAGTGGTATAGCCATCGCCCAACGCGCCCGCCCTTATTGTTCCTCGTCGGCGAACAA CGCAGAGATGTCATCCCCCGCACCCTCATGGACACTGCTCGTCCTGTCCACGAGCGTATCACAGTCGATGAGGAG GTTGTCTACGGTACTGCTGTCATGGAATCCTTCCCGAACGACTTTGCCGACGCCCTTCGCAAGACCAAAGACGCT CCTTGTCGGTGGGTCGTCGTCTTCTCTCCAACTGGATGCGACAGCATGCTCTGTAGTCTTGGCATTCTGGACCCC ACCACAGGCTGTGCTGAATCTGGCTGGGGGGATGGCACGACATTCATAGCCACTATTGGCCCAACGACCAAAGCT TACATGGCCAAGACGTTCAACTTCGAGCCCGATGTTTGCGCCAACACGCCGACGCCGTCAGGGGTTCTTCAAGCC ATCCAAGAGCATATGCGTTGGCCTCCGAGAACTTAG |
| Gene | >Hirsu2|4272 ATGGCGCTGTCCGGAAGCCGCGAGCCAAACGTCGTTCCCGTCCTACTGCTCAAGACGCGGTCCTCCCCGCACGAT CCTTATGAAGACCTCTTCCTTTCCTCTGACGCTGCCGGCGGACCTCGCTTCGCTCCGCGTTTTGTGCCGGTGCTC TCCCACCGCCTCGAGGCTAAAGGCACGGCAAGACTCGCCACCTTGCTACAGCACCGTCAAATCGGCCCGGCCGCT GACAGCGCCTTTGGAGGCCTCATTCTCACGTCGCAGCGGGCCGTCGAGGCATTGGCCAAGATAGTGGCGGACGGG AAAGATTGTGACTTGGGCGCGCCATCATCAATCGACTCGCCTTGTACTCCCTCCAAGCCACGTTGTGTTTGCCGT CCGTGTGCGCGGCCTGGCAGGCGGCACGCCGAGCGAGTTCTGCTGACCCAATATCTGCCCAGGCGACCACAACTG GCCACATCTTCAGGACGTACCCGTCTATAGCGTCGGCCCTGCCACAGCGCGCGCGCTCGCAGCCGTGCGGCTCCG AGTGCCGCTGCAAGTCTTCGGCCAGCACTGCGGTAATGGTGAGGCGCTCAGCCACTTCATTCTCGGCCATTACGC GAAGTGGTATAGCCATCGCCCAACGCGCCCGCCCTTATTGTTCCTCGTCGGCGAACAACGCAGAGATGTCATCCC CCGCACCCTCATGGACACTGCTCGTCCTGTCCACGAGCGTATCACAGTCGATGAGGAGGTTGTCTACGGTACTGC TGTCATGGAATCCTTCCCGAACGACTTTGCCGACGCCCTTCGCAAGACCAAAGACGCTCCTTGTCGGTGGGTCGT CGTCTTCTCTCCAACTGGATGCGACAGCATGCTCTGTAGTCTTGGCATTCTGGACCCCACCACAGGCTGTGCTGA ATCTGGCTGGGGGGATGGCACGACATTCATAGCCACTATTGGCCCAACGACCAAAGCTTACATGGCCAAGACGTT CAACTTCGAGCCCGATGTTTGCGCCAACACGCCGACGCCGTCAGGGGTTCTTCAAGCCATCCAAGAGCATATGCG TTGGCCTCCGAGAACTTAG |