Protein ID | Hirsu2|4226 |
Gene name | |
Location | Contig_2178:363..1034 |
Strand | + |
Gene length (bp) | 671 |
Transcript length (bp) | 423 |
Coding sequence length (bp) | 423 |
Protein length (aa) | 141 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q6NRL6|SYVNA_XENLA | E3 ubiquitin-protein ligase synoviolin A OS=Xenopus laevis GN=syvn1-a PE=2 SV=1 | 10 | 133 | 2.0E-24 |
sp|Q5XHH7|SYVNB_XENLA | E3 ubiquitin-protein ligase synoviolin B OS=Xenopus laevis GN=syvn1-b PE=2 SV=1 | 10 | 133 | 4.0E-24 |
sp|Q95SP2|HRD1_DROME | E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster GN=sip3 PE=1 SV=1 | 10 | 133 | 2.0E-23 |
sp|Q803I8|SYVN1_DANRE | E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2 SV=2 | 4 | 133 | 4.0E-23 |
sp|Q9DBY1|SYVN1_MOUSE | E3 ubiquitin-protein ligase synoviolin OS=Mus musculus GN=Syvn1 PE=1 SV=3 | 5 | 133 | 5.0E-23 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q6NRL6|SYVNA_XENLA | E3 ubiquitin-protein ligase synoviolin A OS=Xenopus laevis GN=syvn1-a PE=2 SV=1 | 10 | 133 | 2.0E-24 |
sp|Q5XHH7|SYVNB_XENLA | E3 ubiquitin-protein ligase synoviolin B OS=Xenopus laevis GN=syvn1-b PE=2 SV=1 | 10 | 133 | 4.0E-24 |
sp|Q95SP2|HRD1_DROME | E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster GN=sip3 PE=1 SV=1 | 10 | 133 | 2.0E-23 |
sp|Q803I8|SYVN1_DANRE | E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2 SV=2 | 4 | 133 | 4.0E-23 |
sp|Q9DBY1|SYVN1_MOUSE | E3 ubiquitin-protein ligase synoviolin OS=Mus musculus GN=Syvn1 PE=1 SV=3 | 5 | 133 | 5.0E-23 |
sp|Q86TM6|SYVN1_HUMAN | E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1 PE=1 SV=2 | 5 | 133 | 7.0E-23 |
sp|A8Y4B2|HRD1_CAEBR | E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae GN=sel-11 PE=3 SV=2 | 11 | 133 | 9.0E-22 |
sp|Q5Z880|HRD1_ORYSJ | ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Oryza sativa subsp. japonica GN=HRD1 PE=2 SV=1 | 4 | 133 | 3.0E-21 |
sp|Q20798|HRD1_CAEEL | E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans GN=sel-11 PE=3 SV=1 | 11 | 133 | 4.0E-21 |
sp|Q9LW77|HRD1A_ARATH | ERAD-associated E3 ubiquitin-protein ligase HRD1A OS=Arabidopsis thaliana GN=HRD1A PE=2 SV=1 | 4 | 133 | 3.0E-20 |
sp|Q6NPT7|HRD1B_ARATH | ERAD-associated E3 ubiquitin-protein ligase HRD1B OS=Arabidopsis thaliana GN=HRD1B PE=2 SV=1 | 4 | 133 | 4.0E-19 |
sp|O74757|HRD1_SCHPO | ERAD-associated E3 ubiquitin-protein ligase hrd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hrd1 PE=1 SV=1 | 30 | 132 | 7.0E-10 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 20 | 0.5 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 7 | 26 | 19 |
2 | 41 | 63 | 22 |
3 | 100 | 122 | 22 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|4226 MPKMRLAWYTGVSTALAAAVVMSAFHQRDNFYSAMVYLAQSNLCLLALVNFSLLLYSSFIYGLTRVCYGTLRAVE VEQLTERAWFAITETCLAMTIFREEIGAWFLVMFTALVTGKVWGWIGDGRVEFLEQQPPPNPTLT* |
Coding | >Hirsu2|4226 ATGCCCAAAATGCGACTTGCCTGGTACACTGGGGTCTCGACGGCCCTAGCGGCCGCAGTCGTCATGTCCGCTTTC CATCAGCGCGATAACTTTTATTCGGCCATGGTCTATCTCGCACAGAGTAATTTGTGTTTGCTGGCACTGGTGAAT TTCTCTCTTCTGCTTTATAGCAGCTTCATCTACGGCTTAACACGTGTCTGCTACGGTACTCTGCGAGCAGTCGAG GTCGAACAGCTCACCGAGCGAGCCTGGTTTGCCATCACGGAAACCTGCCTGGCCATGACCATCTTTCGGGAAGAG ATAGGAGCCTGGTTTTTGGTCATGTTTACCGCTCTCGTGACTGGCAAAGTCTGGGGCTGGATTGGCGACGGACGA GTCGAGTTCCTCGAGCAGCAACCGCCGCCAAACCCCACACTAACGTGA |
Transcript | >Hirsu2|4226 ATGCCCAAAATGCGACTTGCCTGGTACACTGGGGTCTCGACGGCCCTAGCGGCCGCAGTCGTCATGTCCGCTTTC CATCAGCGCGATAACTTTTATTCGGCCATGGTCTATCTCGCACAGAGTAATTTGTGTTTGCTGGCACTGGTGAAT TTCTCTCTTCTGCTTTATAGCAGCTTCATCTACGGCTTAACACGTGTCTGCTACGGTACTCTGCGAGCAGTCGAG GTCGAACAGCTCACCGAGCGAGCCTGGTTTGCCATCACGGAAACCTGCCTGGCCATGACCATCTTTCGGGAAGAG ATAGGAGCCTGGTTTTTGGTCATGTTTACCGCTCTCGTGACTGGCAAAGTCTGGGGCTGGATTGGCGACGGACGA GTCGAGTTCCTCGAGCAGCAACCGCCGCCAAACCCCACACTAACGTGA |
Gene | >Hirsu2|4226 ATGCCCAAAATGCGACTTGCCTGGTACACTGGGGTATGTTTGCTCCCGACACAGACAAAATCTCGAGTTCTTCGC TCGGTTGATTTTGAAAACATGTCAGGTTGACAGAAGCTCCAGGTCTCGACGGCCCTAGCGGCCGCAGTCGTCATG TCCGCTTTCCATCAGCGCGATAACTTTTATTCGGCCATGGTCTATCTCGCACAGAGTAATTTGTGTTTGCTGGTA TCATTTCACTGCTTTTTCTTCCTACGGGGTCAGATGCCCGTCTCCTTTCATACACGAGCTGACTGGTGTACGACT ACCCTCCTAGGCACTGGTGAATTTCTCTCTTCTGCTTTATAGCAGCTTCATCTACGGCTTAACACGTGTCTGCTA CGGTACTCTGCGAGCAGTCGAGGTCGAACAGCTCACCGAGCGAGCCTGGTTTGCCATCACGGAAACCTGCCTGGC CATGACCATCTTTCGGGAAGAGATAGGAGCCTGGTTTTTGGTCATGTTTACCGCTCTCGTGACTGGCAAAGTCTG GGGCTGGATTGGCGACGGACGAGTCGAGTTCCTCGAGCAGCAACCGCCGCCAAACCCCACACTGTTCCACATTCG CCTCAGCGTCTCCCTTGCCTTGAGCTTTTTGTACGACATGTGGATACTCCGGTATGCGGTTCAGAACGTGA |