Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|4219
Gene name
LocationContig_217:26575..27469
Strand+
Gene length (bp)894
Transcript length (bp)831
Coding sequence length (bp)831
Protein length (aa) 277

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF11712 Vma12 Endoplasmic reticulum-based factor for assembly of V-ATPase 8.9E-46 70 217

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly Yes
GO:0016043 cellular component organization No
GO:0009987 cellular process No
GO:0008150 biological_process No
GO:0070070 proton-transporting V-type ATPase complex assembly No
GO:0034622 cellular protein-containing complex assembly No
GO:0022607 cellular component assembly No
GO:0043933 protein-containing complex subunit organization No
GO:0070071 proton-transporting two-sector ATPase complex assembly No
GO:0065003 protein-containing complex assembly No
GO:0071840 cellular component organization or biogenesis No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 14 0.45

Transmembrane Domains

Domain # Start End Length
1 160 179 19
2 189 211 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|4219
MVLLTMTPPMVDGIRSLGNSGHASEPGTYATEGSEPSLGQPAVGKPISHGQVVGLWKKLQASPSPCSLEKLLQGS
RVYLPPPPPKPEPSDEYKALMARLRREEAARAYQRMTSPTPQLDSFHDRFPTAARTFAEANRPANVADLGDDDIT
YREVHRQVMLIINFLVSIVGVAATLWVAARWWSVPARLFLTLGGAIVVAIAEVGVYQGYVWRMGEARSKQKAVKE
VREVVRTWVVGQDQGGEAPPLVLLKTEQESPEEGAVRKRRTATAADSQPDT*
Coding >Hirsu2|4219
ATGGTACTCCTTACCATGACGCCGCCCATGGTCGACGGGATTAGGAGTCTGGGCAACTCCGGCCACGCCTCCGAG
CCCGGGACTTACGCCACGGAGGGCAGCGAGCCTTCGCTGGGACAGCCTGCTGTGGGCAAGCCCATATCGCACGGC
CAGGTGGTCGGCCTGTGGAAGAAGCTGCAGGCCTCACCCTCACCATGCAGCCTTGAGAAGCTTCTCCAAGGCTCG
CGCGTCTATCTTCCCCCGCCTCCGCCGAAACCCGAGCCCTCCGATGAATACAAGGCCCTCATGGCCCGCCTGCGC
CGCGAAGAGGCTGCCCGCGCCTACCAGCGCATGACCAGCCCGACCCCCCAGCTCGACAGCTTTCATGACCGCTTC
CCGACCGCTGCCCGAACCTTTGCCGAGGCGAATCGCCCCGCCAACGTGGCTGATCTCGGCGACGACGACATCACG
TACCGCGAAGTCCACCGCCAGGTCATGCTCATCATCAACTTTCTCGTGAGCATAGTCGGCGTCGCGGCGACGCTC
TGGGTCGCGGCACGGTGGTGGAGCGTGCCGGCGCGGCTGTTCCTCACCCTTGGCGGCGCCATCGTCGTCGCCATT
GCCGAGGTCGGCGTCTATCAGGGCTACGTGTGGAGGATGGGCGAGGCCAGGTCGAAGCAAAAGGCCGTCAAGGAA
GTCAGGGAGGTGGTCAGGACCTGGGTCGTGGGCCAGGACCAAGGCGGCGAGGCCCCTCCGCTAGTGCTCTTGAAG
ACTGAGCAGGAAAGCCCGGAGGAGGGTGCCGTCAGGAAGAGAAGGACGGCAACAGCGGCAGACAGCCAGCCAGAC
ACATGA
Transcript >Hirsu2|4219
ATGGTACTCCTTACCATGACGCCGCCCATGGTCGACGGGATTAGGAGTCTGGGCAACTCCGGCCACGCCTCCGAG
CCCGGGACTTACGCCACGGAGGGCAGCGAGCCTTCGCTGGGACAGCCTGCTGTGGGCAAGCCCATATCGCACGGC
CAGGTGGTCGGCCTGTGGAAGAAGCTGCAGGCCTCACCCTCACCATGCAGCCTTGAGAAGCTTCTCCAAGGCTCG
CGCGTCTATCTTCCCCCGCCTCCGCCGAAACCCGAGCCCTCCGATGAATACAAGGCCCTCATGGCCCGCCTGCGC
CGCGAAGAGGCTGCCCGCGCCTACCAGCGCATGACCAGCCCGACCCCCCAGCTCGACAGCTTTCATGACCGCTTC
CCGACCGCTGCCCGAACCTTTGCCGAGGCGAATCGCCCCGCCAACGTGGCTGATCTCGGCGACGACGACATCACG
TACCGCGAAGTCCACCGCCAGGTCATGCTCATCATCAACTTTCTCGTGAGCATAGTCGGCGTCGCGGCGACGCTC
TGGGTCGCGGCACGGTGGTGGAGCGTGCCGGCGCGGCTGTTCCTCACCCTTGGCGGCGCCATCGTCGTCGCCATT
GCCGAGGTCGGCGTCTATCAGGGCTACGTGTGGAGGATGGGCGAGGCCAGGTCGAAGCAAAAGGCCGTCAAGGAA
GTCAGGGAGGTGGTCAGGACCTGGGTCGTGGGCCAGGACCAAGGCGGCGAGGCCCCTCCGCTAGTGCTCTTGAAG
ACTGAGCAGGAAAGCCCGGAGGAGGGTGCCGTCAGGAAGAGAAGGACGGCAACAGCGGCAGACAGCCAGCCAGAC
ACATGA
Gene >Hirsu2|4219
ATGGTACTCCTTACCATGACGCCGCCCATGGTCGACGGGATTAGGAGTCTGGGCAACTCCGGCCACGCCTCCGAG
CCCGGGACTTACGCCACGGAGGGCAGCGAGCCTTCGCTGGGACAGCCTGCTGTGGGCAAGCCCATATCGCACGGC
CAGGTGGTCGGCCTGTGGAAGAAGCTGCAGGCCTCACCCTCACCATGCAGCCTTGAGAAGCTTCTCCAAGGCTCG
CGCGTCTATCTTCCCCCGCCTCCGCCGAAACCCGAGCCCGTACGTCCCCCCTCTTCCGGACACTCGCTGCCTTGT
ATCCGCTGACTCCCGGCTCTGCTCCAGTCCGATGAATACAAGGCCCTCATGGCCCGCCTGCGCCGCGAAGAGGCT
GCCCGCGCCTACCAGCGCATGACCAGCCCGACCCCCCAGCTCGACAGCTTTCATGACCGCTTCCCGACCGCTGCC
CGAACCTTTGCCGAGGCGAATCGCCCCGCCAACGTGGCTGATCTCGGCGACGACGACATCACGTACCGCGAAGTC
CACCGCCAGGTCATGCTCATCATCAACTTTCTCGTGAGCATAGTCGGCGTCGCGGCGACGCTCTGGGTCGCGGCA
CGGTGGTGGAGCGTGCCGGCGCGGCTGTTCCTCACCCTTGGCGGCGCCATCGTCGTCGCCATTGCCGAGGTCGGC
GTCTATCAGGGCTACGTGTGGAGGATGGGCGAGGCCAGGTCGAAGCAAAAGGCCGTCAAGGAAGTCAGGGAGGTG
GTCAGGACCTGGGTCGTGGGCCAGGACCAAGGCGGCGAGGCCCCTCCGCTAGTGCTCTTGAAGACTGAGCAGGAA
AGCCCGGAGGAGGGTGCCGTCAGGAAGAGAAGGACGGCAACAGCGGCAGACAGCCAGCCAGACACATGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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