© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|4192 |
| Gene name | |
| Location | Contig_216:2437..3048 |
| Strand | + |
| Gene length (bp) | 611 |
| Transcript length (bp) | 528 |
| Coding sequence length (bp) | 528 |
| Protein length (aa) | 176 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05046 | Img2 | Mitochondrial large subunit ribosomal protein (Img2) | 1.2E-23 | 94 | 175 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10139|IMG2_SCHPO | 54S ribosomal protein img2, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=img2 PE=3 SV=1 | 93 | 175 | 1.0E-11 |
| sp|Q9CQ40|RM49_MOUSE | 39S ribosomal protein L49, mitochondrial OS=Mus musculus GN=Mrpl49 PE=1 SV=1 | 90 | 175 | 1.0E-08 |
| sp|Q5EA71|RM49_BOVIN | 39S ribosomal protein L49, mitochondrial OS=Bos taurus GN=MRPL49 PE=1 SV=1 | 95 | 175 | 2.0E-07 |
| sp|Q5R8X0|RM49_PONAB | 39S ribosomal protein L49, mitochondrial OS=Pongo abelii GN=MRPL49 PE=2 SV=1 | 95 | 175 | 4.0E-07 |
| sp|Q13405|RM49_HUMAN | 39S ribosomal protein L49, mitochondrial OS=Homo sapiens GN=MRPL49 PE=1 SV=1 | 95 | 175 | 4.0E-07 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10139|IMG2_SCHPO | 54S ribosomal protein img2, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=img2 PE=3 SV=1 | 93 | 175 | 1.0E-11 |
| sp|Q9CQ40|RM49_MOUSE | 39S ribosomal protein L49, mitochondrial OS=Mus musculus GN=Mrpl49 PE=1 SV=1 | 90 | 175 | 1.0E-08 |
| sp|Q5EA71|RM49_BOVIN | 39S ribosomal protein L49, mitochondrial OS=Bos taurus GN=MRPL49 PE=1 SV=1 | 95 | 175 | 2.0E-07 |
| sp|Q5R8X0|RM49_PONAB | 39S ribosomal protein L49, mitochondrial OS=Pongo abelii GN=MRPL49 PE=2 SV=1 | 95 | 175 | 4.0E-07 |
| sp|Q13405|RM49_HUMAN | 39S ribosomal protein L49, mitochondrial OS=Homo sapiens GN=MRPL49 PE=1 SV=1 | 95 | 175 | 4.0E-07 |
| sp|Q4R5K7|RM49_MACFA | 39S ribosomal protein L49, mitochondrial OS=Macaca fascicularis GN=MRPL49 PE=2 SV=1 | 95 | 175 | 4.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003735 | structural constituent of ribosome | Yes |
| GO:0005622 | intracellular | Yes |
| GO:0005840 | ribosome | Yes |
| GO:0006412 | translation | Yes |
| GO:0008152 | metabolic process | No |
| GO:1990904 | ribonucleoprotein complex | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0043604 | amide biosynthetic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0043232 | intracellular non-membrane-bounded organelle | No |
| GO:0044267 | cellular protein metabolic process | No |
| GO:0043229 | intracellular organelle | No |
| GO:0008150 | biological_process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0043603 | cellular amide metabolic process | No |
| GO:0043226 | organelle | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0019538 | protein metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0032991 | protein-containing complex | No |
| GO:0044424 | intracellular part | No |
| GO:0005198 | structural molecule activity | No |
| GO:0034645 | cellular macromolecule biosynthetic process | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0009987 | cellular process | No |
| GO:0044444 | cytoplasmic part | No |
| GO:0044464 | cell part | No |
| GO:1901566 | organonitrogen compound biosynthetic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0043228 | non-membrane-bounded organelle | No |
| GO:0043043 | peptide biosynthetic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006518 | peptide metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 16 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4192 MSRLLSRIFFARAAALSSPRPPPPPPFLRIATSSSTASSSSSAYSTEAWQLDGPGASPKAIRRRARQQREEQRGP DDLVTPPPTKTAEELARMPYVVRRTPSCQPPVYRDVRSGGTRKVVLIKKIEGDKQQMVRDLVEHLKIDREKVRIN PITEHVEVKGDLLRPVKQWLLGSGF* |
| Coding | >Hirsu2|4192 ATGAGCCGATTGCTCTCTCGAATCTTCTTCGCCCGCGCGGCCGCCCTCTCCTCGCCCCGGCCGCCGCCGCCGCCG CCGTTCCTCCGAATCGCCACCTCCTCCTCCACCGCCTCCTCCTCCTCCTCCGCCTACTCGACCGAGGCCTGGCAG CTGGACGGCCCCGGCGCCTCCCCCAAGGCCATCCGCAGGCGCGCGCGCCAGCAGCGCGAGGAGCAGCGCGGGCCC GACGACCTCGTCACCCCGCCTCCCACCAAGACGGCCGAGGAGTTGGCGCGGATGCCCTACGTCGTCCGCCGCACG CCCTCCTGCCAGCCGCCCGTCTATCGGGACGTCCGCTCGGGCGGCACCAGGAAGGTCGTCCTCATCAAGAAGATC GAGGGCGACAAGCAACAAATGGTGCGCGACTTGGTCGAGCATCTGAAAATCGACCGCGAAAAGGTCAGGATCAAT CCCATAACGGAACATGTCGAGGTCAAGGGCGACCTTCTCCGGCCAGTCAAGCAATGGCTGTTAGGCTCAGGCTTC TAA |
| Transcript | >Hirsu2|4192 ATGAGCCGATTGCTCTCTCGAATCTTCTTCGCCCGCGCGGCCGCCCTCTCCTCGCCCCGGCCGCCGCCGCCGCCG CCGTTCCTCCGAATCGCCACCTCCTCCTCCACCGCCTCCTCCTCCTCCTCCGCCTACTCGACCGAGGCCTGGCAG CTGGACGGCCCCGGCGCCTCCCCCAAGGCCATCCGCAGGCGCGCGCGCCAGCAGCGCGAGGAGCAGCGCGGGCCC GACGACCTCGTCACCCCGCCTCCCACCAAGACGGCCGAGGAGTTGGCGCGGATGCCCTACGTCGTCCGCCGCACG CCCTCCTGCCAGCCGCCCGTCTATCGGGACGTCCGCTCGGGCGGCACCAGGAAGGTCGTCCTCATCAAGAAGATC GAGGGCGACAAGCAACAAATGGTGCGCGACTTGGTCGAGCATCTGAAAATCGACCGCGAAAAGGTCAGGATCAAT CCCATAACGGAACATGTCGAGGTCAAGGGCGACCTTCTCCGGCCAGTCAAGCAATGGCTGTTAGGCTCAGGCTTC TAA |
| Gene | >Hirsu2|4192 ATGAGCCGATTGCTCTCTCGAATCTTCTTCGCCCGCGCGGCCGCCCTCTCCTCGCCCCGGCCGCCGCCGCCGCCG CCGTTCCTCCGAATCGCCACCTCCTCCTCCACCGCCTCCTCCTCCTCCTCCGCCTACTCGACCGAGGCCTGGCAG CTGGACGGCCCCGGCGCCTCCCCCAAGGCCATCCGCAGGCGCGCGCGCCAGCAGCGCGAGGAGCAGCGCGGGCCC GACGACCTCGTCACCCCGCCTCCCACCAAGACGGCCGAGGAGTTGGCGCGGATGCCCTACGTCGTCCGCCGCACG CCCTCCTGCCAGCCGCCCGTCTATCGGGACGTCCGCTCGGGCGGCACCAGGAAGGTCGTCCTCATCAAGAAGATC GAGGGCGACAAGCAACAAATGGTGCGCGACTTGGTCGAGCATCTGAAAATCGACCGCGAAAAGGTCAGGATCAAT CCCATAACGGAACATGTCGAGGTCAAGGTACGCACGCCCTCTCCGTCGCTCTTCCTTGCACCCTCAACGAGGAGC GCGAGCCGCGCGAGACTCACACGCACAACTTGCAGGGCGACCTTCTCCGGCCAGTCAAGCAATGGCTGTTAGGCT CAGGCTTCTAA |