© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|4184 |
| Gene name | |
| Location | Contig_2154:2527..3475 |
| Strand | - |
| Gene length (bp) | 948 |
| Transcript length (bp) | 948 |
| Coding sequence length (bp) | 948 |
| Protein length (aa) | 316 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07993 | NAD_binding_4 | Male sterility protein | 1.6E-22 | 6 | 187 |
| PF01370 | Epimerase | NAD dependent epimerase/dehydratase family | 3.2E-08 | 28 | 191 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q70LM4|LGRD_BREPA | Linear gramicidin synthase subunit D OS=Brevibacillus parabrevis GN=lgrD PE=1 SV=1 | 11 | 269 | 1.0E-13 |
| sp|O74298|LYS2_PENCH | L-2-aminoadipate reductase large subunit OS=Penicillium chrysogenum GN=lys2 PE=3 SV=1 | 6 | 194 | 3.0E-09 |
| sp|Q6RKB1|CAR_NOCIO | Carboxylic acid reductase OS=Nocardia iowensis GN=car PE=1 SV=1 | 8 | 169 | 4.0E-08 |
| sp|P37693|HETM_NOSS1 | Polyketide synthase HetM OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=hetM PE=3 SV=1 | 11 | 253 | 9.0E-08 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 14 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4184 LAADFAKVDFVGADLSLPDLGLGPARYDELLARADRVIHNAWPVNFNISVASFEPHVRGVRHLVDFAARAAKRVP VVFVSSISTVMAWPSAAPVPERRIDDLSVAGLGYGRSKLAGSLILDAAAARSGIPAASVRVGQIAGPRGRAGVWN RQEYLPSLIASSVHLGLLPSHLATGHEVDWTPVEDVAGLILDVAGVTARHAVADITGYFHAVNPARTTWAELAPV LADYYRGRIKKLVSFEDWLAALKRSGTADLDRNPAAKLVDMYDGMLRAFQAGHGHVNFAMERTMSYSPTVARLGP ITPDLLRNWCDQWNY* |
| Coding | >Hirsu2|4184 CTGGCCGCCGACTTCGCCAAGGTCGACTTCGTCGGCGCCGACCTGTCGCTCCCGGACCTGGGCCTCGGGCCGGCG CGGTACGACGAGCTGCTGGCCCGCGCGGACCGGGTGATCCACAACGCGTGGCCCGTCAACTTCAACATCAGCGTC GCCTCGTTCGAGCCGCACGTGCGCGGCGTGCGGCACCTCGTCGACTTCGCTGCGCGGGCGGCCAAGCGCGTGCCC GTCGTCTTCGTCTCCAGCATCAGCACCGTCATGGCCTGGCCGTCGGCGGCGCCGGTGCCGGAGCGGCGCATCGAC GACCTCTCCGTCGCCGGCCTGGGCTACGGCCGCTCCAAGCTGGCCGGCAGCCTGATCCTGGACGCGGCCGCCGCC CGGTCCGGCATCCCCGCGGCGTCGGTCCGGGTCGGGCAGATCGCGGGGCCGCGCGGCCGCGCCGGCGTCTGGAAC CGGCAGGAGTACCTGCCGTCGCTCATCGCCAGCTCCGTCCACCTCGGCCTCCTGCCGTCGCACCTGGCGACCGGG CACGAGGTCGACTGGACGCCCGTCGAGGACGTGGCCGGCCTGATCCTCGACGTCGCGGGCGTCACGGCCCGGCAC GCCGTCGCCGACATCACCGGCTACTTCCACGCCGTCAACCCGGCCCGCACGACGTGGGCCGAGCTGGCGCCCGTG CTGGCCGACTACTACCGCGGCCGCATCAAGAAGCTCGTCAGCTTCGAGGACTGGCTCGCCGCGCTCAAGCGCAGC GGCACCGCCGACCTGGACCGGAACCCGGCCGCCAAGCTGGTCGACATGTACGACGGCATGCTGCGGGCCTTCCAG GCAGGGCACGGCCACGTCAACTTCGCCATGGAGAGGACCATGAGCTACAGCCCGACCGTGGCCCGTCTCGGGCCC ATCACCCCGGACCTGCTCAGGAACTGGTGCGATCAGTGGAACTACTGA |
| Transcript | >Hirsu2|4184 CTGGCCGCCGACTTCGCCAAGGTCGACTTCGTCGGCGCCGACCTGTCGCTCCCGGACCTGGGCCTCGGGCCGGCG CGGTACGACGAGCTGCTGGCCCGCGCGGACCGGGTGATCCACAACGCGTGGCCCGTCAACTTCAACATCAGCGTC GCCTCGTTCGAGCCGCACGTGCGCGGCGTGCGGCACCTCGTCGACTTCGCTGCGCGGGCGGCCAAGCGCGTGCCC GTCGTCTTCGTCTCCAGCATCAGCACCGTCATGGCCTGGCCGTCGGCGGCGCCGGTGCCGGAGCGGCGCATCGAC GACCTCTCCGTCGCCGGCCTGGGCTACGGCCGCTCCAAGCTGGCCGGCAGCCTGATCCTGGACGCGGCCGCCGCC CGGTCCGGCATCCCCGCGGCGTCGGTCCGGGTCGGGCAGATCGCGGGGCCGCGCGGCCGCGCCGGCGTCTGGAAC CGGCAGGAGTACCTGCCGTCGCTCATCGCCAGCTCCGTCCACCTCGGCCTCCTGCCGTCGCACCTGGCGACCGGG CACGAGGTCGACTGGACGCCCGTCGAGGACGTGGCCGGCCTGATCCTCGACGTCGCGGGCGTCACGGCCCGGCAC GCCGTCGCCGACATCACCGGCTACTTCCACGCCGTCAACCCGGCCCGCACGACGTGGGCCGAGCTGGCGCCCGTG CTGGCCGACTACTACCGCGGCCGCATCAAGAAGCTCGTCAGCTTCGAGGACTGGCTCGCCGCGCTCAAGCGCAGC GGCACCGCCGACCTGGACCGGAACCCGGCCGCCAAGCTGGTCGACATGTACGACGGCATGCTGCGGGCCTTCCAG GCAGGGCACGGCCACGTCAACTTCGCCATGGAGAGGACCATGAGCTACAGCCCGACCGTGGCCCGTCTCGGGCCC ATCACCCCGGACCTGCTCAGGAACTGGTGCGATCAGTGGAACTACTGA |
| Gene | >Hirsu2|4184 CTGGCCGCCGACTTCGCCAAGGTCGACTTCGTCGGCGCCGACCTGTCGCTCCCGGACCTGGGCCTCGGGCCGGCG CGGTACGACGAGCTGCTGGCCCGCGCGGACCGGGTGATCCACAACGCGTGGCCCGTCAACTTCAACATCAGCGTC GCCTCGTTCGAGCCGCACGTGCGCGGCGTGCGGCACCTCGTCGACTTCGCTGCGCGGGCGGCCAAGCGCGTGCCC GTCGTCTTCGTCTCCAGCATCAGCACCGTCATGGCCTGGCCGTCGGCGGCGCCGGTGCCGGAGCGGCGCATCGAC GACCTCTCCGTCGCCGGCCTGGGCTACGGCCGCTCCAAGCTGGCCGGCAGCCTGATCCTGGACGCGGCCGCCGCC CGGTCCGGCATCCCCGCGGCGTCGGTCCGGGTCGGGCAGATCGCGGGGCCGCGCGGCCGCGCCGGCGTCTGGAAC CGGCAGGAGTACCTGCCGTCGCTCATCGCCAGCTCCGTCCACCTCGGCCTCCTGCCGTCGCACCTGGCGACCGGG CACGAGGTCGACTGGACGCCCGTCGAGGACGTGGCCGGCCTGATCCTCGACGTCGCGGGCGTCACGGCCCGGCAC GCCGTCGCCGACATCACCGGCTACTTCCACGCCGTCAACCCGGCCCGCACGACGTGGGCCGAGCTGGCGCCCGTG CTGGCCGACTACTACCGCGGCCGCATCAAGAAGCTCGTCAGCTTCGAGGACTGGCTCGCCGCGCTCAAGCGCAGC GGCACCGCCGACCTGGACCGGAACCCGGCCGCCAAGCTGGTCGACATGTACGACGGCATGCTGCGGGCCTTCCAG GCAGGGCACGGCCACGTCAACTTCGCCATGGAGAGGACCATGAGCTACAGCCCGACCGTGGCCCGTCTCGGGCCC ATCACCCCGGACCTGCTCAGGAACTGGTGCGATCAGTGGAACTACTGA |