© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|4183 |
| Gene name | |
| Location | Contig_2154:1000..2209 |
| Strand | + |
| Gene length (bp) | 1209 |
| Transcript length (bp) | 1209 |
| Coding sequence length (bp) | 1209 |
| Protein length (aa) | 403 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1366 | 0.053 | 0.9501 | 0.1473 | 0.0605 | 0.1126 | 0.3428 | 0.3853 | 0.3205 | 0.0042 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 23 | 0.999722 |
| Orthofinder run ID | 4 |
| Orthogroup | 9545 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|4183 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4183 MMPLRSGLSFAIVALLGISRVAARQPCSSDDGCSLNGVCRQGACLCDPGWKGEDCGALDVRPAKRTNGYNLTGSG TSSWGSAIVRDPWDRGLHHLLVAEFTNRCGLDFWSPYSRIVRAESRSGPAGPYAFAAEIRGTFAHNPTVVYSPAD DRWLLYYIGCAVDVAAGACAHRRFTCGPGNANNGESGISALSSRDLRRWRSEGRVLAGDDSGGWDADVTNPSAFP LCSGRGRADGPAMLLAYRGCPSDCLGAERINLAVSDPGSGTRRPYRKMQPGPLFGNAGEDPFLWRDGRGHFHMLL HSLEPDGGFGSGPKVGRHAWARNQTGPWTFGTETVAFGTAVEFDDGRAVDFYRRERPQLYFSDDGAMTPLLLTTG VQPRGSPMSYSLIVPLGDEGVEVQRRH* |
| Coding | >Hirsu2|4183 ATGATGCCTCTTAGGTCGGGACTGAGCTTCGCCATAGTGGCTCTGCTTGGAATCTCTCGTGTGGCTGCCCGCCAA CCATGCTCCTCGGACGACGGTTGCAGCCTCAACGGCGTCTGCCGCCAAGGTGCTTGCCTCTGCGACCCGGGCTGG AAAGGCGAGGATTGCGGCGCGCTTGATGTCCGCCCGGCCAAGAGGACGAATGGCTATAACCTCACGGGCTCGGGC ACGTCCTCTTGGGGCTCGGCCATCGTCCGGGACCCGTGGGATCGCGGCCTGCACCATCTGCTTGTTGCCGAGTTC ACGAACCGCTGTGGCCTGGACTTCTGGTCGCCGTACAGCCGCATCGTCCGTGCCGAGTCGCGGTCCGGCCCCGCT GGACCGTATGCGTTCGCCGCTGAGATCCGGGGCACATTTGCGCACAACCCGACCGTCGTCTACAGCCCGGCCGAC GACCGATGGCTCCTGTACTACATAGGCTGCGCCGTGGACGTGGCGGCGGGCGCGTGCGCCCACAGGAGATTCACC TGCGGGCCGGGCAATGCCAACAACGGCGAGAGCGGCATCTCGGCCCTGTCGAGCCGCGACCTGCGGCGCTGGCGG TCCGAGGGCCGGGTCCTGGCGGGAGACGACTCCGGCGGTTGGGATGCCGACGTCACGAACCCGTCGGCCTTCCCG CTCTGCTCGGGCCGCGGCCGCGCCGACGGGCCGGCCATGCTGCTGGCCTACCGCGGCTGCCCCTCCGACTGCCTG GGCGCCGAGCGGATCAACCTGGCCGTCTCGGACCCCGGCTCCGGGACCCGACGGCCCTACCGAAAGATGCAGCCG GGGCCCCTCTTCGGCAACGCCGGCGAGGACCCGTTCCTCTGGCGCGACGGGCGCGGCCACTTCCACATGCTCCTG CACTCGCTCGAGCCCGACGGCGGCTTCGGGAGCGGCCCCAAGGTCGGCCGCCACGCCTGGGCCCGGAACCAGACC GGCCCGTGGACGTTCGGGACCGAGACGGTGGCGTTCGGCACCGCCGTCGAGTTCGACGACGGCCGCGCCGTCGAC TTCTACCGCCGCGAGAGGCCGCAGCTGTACTTTTCCGACGACGGCGCCATGACGCCCCTGCTGCTGACGACGGGG GTCCAGCCGCGCGGGAGCCCCATGAGCTACAGCCTCATTGTTCCCCTGGGGGACGAGGGCGTCGAGGTCCAGCGG AGGCATTGA |
| Transcript | >Hirsu2|4183 ATGATGCCTCTTAGGTCGGGACTGAGCTTCGCCATAGTGGCTCTGCTTGGAATCTCTCGTGTGGCTGCCCGCCAA CCATGCTCCTCGGACGACGGTTGCAGCCTCAACGGCGTCTGCCGCCAAGGTGCTTGCCTCTGCGACCCGGGCTGG AAAGGCGAGGATTGCGGCGCGCTTGATGTCCGCCCGGCCAAGAGGACGAATGGCTATAACCTCACGGGCTCGGGC ACGTCCTCTTGGGGCTCGGCCATCGTCCGGGACCCGTGGGATCGCGGCCTGCACCATCTGCTTGTTGCCGAGTTC ACGAACCGCTGTGGCCTGGACTTCTGGTCGCCGTACAGCCGCATCGTCCGTGCCGAGTCGCGGTCCGGCCCCGCT GGACCGTATGCGTTCGCCGCTGAGATCCGGGGCACATTTGCGCACAACCCGACCGTCGTCTACAGCCCGGCCGAC GACCGATGGCTCCTGTACTACATAGGCTGCGCCGTGGACGTGGCGGCGGGCGCGTGCGCCCACAGGAGATTCACC TGCGGGCCGGGCAATGCCAACAACGGCGAGAGCGGCATCTCGGCCCTGTCGAGCCGCGACCTGCGGCGCTGGCGG TCCGAGGGCCGGGTCCTGGCGGGAGACGACTCCGGCGGTTGGGATGCCGACGTCACGAACCCGTCGGCCTTCCCG CTCTGCTCGGGCCGCGGCCGCGCCGACGGGCCGGCCATGCTGCTGGCCTACCGCGGCTGCCCCTCCGACTGCCTG GGCGCCGAGCGGATCAACCTGGCCGTCTCGGACCCCGGCTCCGGGACCCGACGGCCCTACCGAAAGATGCAGCCG GGGCCCCTCTTCGGCAACGCCGGCGAGGACCCGTTCCTCTGGCGCGACGGGCGCGGCCACTTCCACATGCTCCTG CACTCGCTCGAGCCCGACGGCGGCTTCGGGAGCGGCCCCAAGGTCGGCCGCCACGCCTGGGCCCGGAACCAGACC GGCCCGTGGACGTTCGGGACCGAGACGGTGGCGTTCGGCACCGCCGTCGAGTTCGACGACGGCCGCGCCGTCGAC TTCTACCGCCGCGAGAGGCCGCAGCTGTACTTTTCCGACGACGGCGCCATGACGCCCCTGCTGCTGACGACGGGG GTCCAGCCGCGCGGGAGCCCCATGAGCTACAGCCTCATTGTTCCCCTGGGGGACGAGGGCGTCGAGGTCCAGCGG AGGCATTGA |
| Gene | >Hirsu2|4183 ATGATGCCTCTTAGGTCGGGACTGAGCTTCGCCATAGTGGCTCTGCTTGGAATCTCTCGTGTGGCTGCCCGCCAA CCATGCTCCTCGGACGACGGTTGCAGCCTCAACGGCGTCTGCCGCCAAGGTGCTTGCCTCTGCGACCCGGGCTGG AAAGGCGAGGATTGCGGCGCGCTTGATGTCCGCCCGGCCAAGAGGACGAATGGCTATAACCTCACGGGCTCGGGC ACGTCCTCTTGGGGCTCGGCCATCGTCCGGGACCCGTGGGATCGCGGCCTGCACCATCTGCTTGTTGCCGAGTTC ACGAACCGCTGTGGCCTGGACTTCTGGTCGCCGTACAGCCGCATCGTCCGTGCCGAGTCGCGGTCCGGCCCCGCT GGACCGTATGCGTTCGCCGCTGAGATCCGGGGCACATTTGCGCACAACCCGACCGTCGTCTACAGCCCGGCCGAC GACCGATGGCTCCTGTACTACATAGGCTGCGCCGTGGACGTGGCGGCGGGCGCGTGCGCCCACAGGAGATTCACC TGCGGGCCGGGCAATGCCAACAACGGCGAGAGCGGCATCTCGGCCCTGTCGAGCCGCGACCTGCGGCGCTGGCGG TCCGAGGGCCGGGTCCTGGCGGGAGACGACTCCGGCGGTTGGGATGCCGACGTCACGAACCCGTCGGCCTTCCCG CTCTGCTCGGGCCGCGGCCGCGCCGACGGGCCGGCCATGCTGCTGGCCTACCGCGGCTGCCCCTCCGACTGCCTG GGCGCCGAGCGGATCAACCTGGCCGTCTCGGACCCCGGCTCCGGGACCCGACGGCCCTACCGAAAGATGCAGCCG GGGCCCCTCTTCGGCAACGCCGGCGAGGACCCGTTCCTCTGGCGCGACGGGCGCGGCCACTTCCACATGCTCCTG CACTCGCTCGAGCCCGACGGCGGCTTCGGGAGCGGCCCCAAGGTCGGCCGCCACGCCTGGGCCCGGAACCAGACC GGCCCGTGGACGTTCGGGACCGAGACGGTGGCGTTCGGCACCGCCGTCGAGTTCGACGACGGCCGCGCCGTCGAC TTCTACCGCCGCGAGAGGCCGCAGCTGTACTTTTCCGACGACGGCGCCATGACGCCCCTGCTGCTGACGACGGGG GTCCAGCCGCGCGGGAGCCCCATGAGCTACAGCCTCATTGTTCCCCTGGGGGACGAGGGCGTCGAGGTCCAGCGG AGGCATTGA |