© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|416 |
| Gene name | |
| Location | Contig_1082:6331..7236 |
| Strand | + |
| Gene length (bp) | 905 |
| Transcript length (bp) | 837 |
| Coding sequence length (bp) | 837 |
| Protein length (aa) | 279 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide | 0.0676 | 0.075 | 0.0144 | 0.131 | 0.2867 | 0.0373 | 0.8369 | 0.381 | 0.0966 | 0.2059 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 19 | 0.650327 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 49 | 71 | 22 |
| 2 | 109 | 128 | 19 |
| Orthofinder run ID | 4 |
| Orthogroup | 6964 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|1719 |
| Ophiocordyceps subramaniannii | Hirsu2|3529 |
| Ophiocordyceps subramaniannii | Hirsu2|416 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|416 MDRVWLTVFLSLVLRFASAAPAHAVNETNTSVQKDEPSWESGPHTRGTLGLFFSCVITLFLCVWTTVHVNIEPTN EMNYRFSKLCGFAIPYLSNRDLGKILVKSWVRKLGWGLVTLIVPEGSMAIATYERRTAKLLREKMNEIKKDEKEW DMSLAYYAVMGGFVIPEDVYDDVKVEKEKEKEKNKDERDEKVDIHENKTLTLTPYGVLQVAEWEKGGPPLLCITS EEVRDKGNASSVAKVLVFWQVFWMILQVIGRAVTRLPVTLLELHTVLHTFCAS* |
| Coding | >Hirsu2|416 ATGGATAGAGTCTGGCTTACGGTCTTCCTTTCACTCGTCCTTCGATTCGCGAGCGCCGCGCCAGCGCACGCTGTC AACGAGACGAACACGTCCGTCCAAAAGGACGAACCGTCGTGGGAATCAGGACCTCACACGCGTGGCACCCTGGGT CTTTTCTTTAGCTGCGTCATCACATTGTTCCTCTGCGTCTGGACCACGGTCCATGTCAACATCGAGCCGACAAAC GAGATGAACTACAGGTTCAGCAAGCTCTGTGGCTTCGCCATTCCGTATCTCAGCAATAGAGACCTTGGCAAAATT CTGGTCAAGTCATGGGTCCGGAAGCTCGGCTGGGGTCTTGTAACCCTTATTGTACCTGAAGGCTCGATGGCCATT GCGACATACGAGAGAAGAACCGCCAAACTCCTCCGCGAAAAGATGAACGAAATCAAGAAGGATGAGAAGGAGTGG GACATGTCACTAGCTTATTACGCTGTCATGGGAGGGTTTGTCATTCCGGAAGATGTCTATGACGACGTCAAGGTG GAGAAGGAGAAGGAGAAGGAGAAGAACAAGGACGAAAGAGACGAAAAGGTGGACATTCATGAAAACAAGACTCTT ACTCTTACCCCTTACGGAGTCCTTCAGGTGGCAGAGTGGGAGAAGGGTGGGCCCCCGCTGCTGTGCATTACATCC GAAGAGGTGCGTGACAAGGGCAATGCCAGCTCTGTTGCGAAAGTCCTCGTTTTCTGGCAGGTGTTTTGGATGATA CTCCAGGTCATCGGCCGGGCCGTTACGAGGTTACCTGTGACGCTGCTCGAGCTACATACCGTCTTGCACACATTC TGTGCGTCATGA |
| Transcript | >Hirsu2|416 ATGGATAGAGTCTGGCTTACGGTCTTCCTTTCACTCGTCCTTCGATTCGCGAGCGCCGCGCCAGCGCACGCTGTC AACGAGACGAACACGTCCGTCCAAAAGGACGAACCGTCGTGGGAATCAGGACCTCACACGCGTGGCACCCTGGGT CTTTTCTTTAGCTGCGTCATCACATTGTTCCTCTGCGTCTGGACCACGGTCCATGTCAACATCGAGCCGACAAAC GAGATGAACTACAGGTTCAGCAAGCTCTGTGGCTTCGCCATTCCGTATCTCAGCAATAGAGACCTTGGCAAAATT CTGGTCAAGTCATGGGTCCGGAAGCTCGGCTGGGGTCTTGTAACCCTTATTGTACCTGAAGGCTCGATGGCCATT GCGACATACGAGAGAAGAACCGCCAAACTCCTCCGCGAAAAGATGAACGAAATCAAGAAGGATGAGAAGGAGTGG GACATGTCACTAGCTTATTACGCTGTCATGGGAGGGTTTGTCATTCCGGAAGATGTCTATGACGACGTCAAGGTG GAGAAGGAGAAGGAGAAGGAGAAGAACAAGGACGAAAGAGACGAAAAGGTGGACATTCATGAAAACAAGACTCTT ACTCTTACCCCTTACGGAGTCCTTCAGGTGGCAGAGTGGGAGAAGGGTGGGCCCCCGCTGCTGTGCATTACATCC GAAGAGGTGCGTGACAAGGGCAATGCCAGCTCTGTTGCGAAAGTCCTCGTTTTCTGGCAGGTGTTTTGGATGATA CTCCAGGTCATCGGCCGGGCCGTTACGAGGTTACCTGTGACGCTGCTCGAGCTACATACCGTCTTGCACACATTC TGTGCGTCATGA |
| Gene | >Hirsu2|416 ATGGATAGAGTCTGGCTTACGGTCTTCCTTTCACTCGTCCTTCGATTCGCGAGCGCCGCGCCAGCGCACGCTGTC AACGAGACGAACACGTCCGTCCAAAAGGACGAACCGTCGTGGGAATCAGGACCTCACACGCGTGGCACCCTGGGT CTTTTCTTTAGCTGCGTCATCACATTGTTCCTCTGCGTCTGGACCACGGTCCATGTCAACATCGAGCCGACAAAC GAGATGAACTACAGGTTCAGCAAGCTCTGTGGCTTCGCCATTCCGTATCTCAGCAATAGAGACCTTGGCAAAATT CTGGTCAAGTCATGGGTCCGGAAGCTCGGCTGGGGTCTTGTAACCCTTATTGTACCTGAAGGCTCGATGGCCATT GCGACATACGAGAGAAGAACCGCCAAACTCCTCCGCGAAAAGATGAACGAAATCAAGAAGGATGAGAAGGAGTGG GACATGTCACTAGCTTATTACGCTGTCATGGGAGGGTTTGTCATTCCGGAAGATGTCTATGACGACGTCAAGGTG GAGAAGGAGAAGGAGAAGGAGAAGAACAAGGACGAAAGAGACGAAAAGGTGGACATTCATGAAAACAAGACTCTT ACTCTTACCCCTTACGGAGTCCTTCAGGTGGCAGAGTGGGAGAAGGGTGGGCCCCCGCTGCTGTGCATTACATCC GAAGAGGTGCGTGACAAGGGCAATGCCAGCTCTGTTGCGAAAGTCCTCGTTTTCTGGCAGGTGTTTTGGATGATA CTCCAGGTCATCGGCCGGGCCGTTACGAGGTTACCTGTGACGCTGCTCGAGCTACATACCGTCTTGCACACATTC TGTGCGGTGGCTATGTACGCAACGTGGTGGAGCAAGCCAGTCGACATCGACAACCCAACCGTCGTTTCTCTCAGT CATGA |