© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|4159 |
| Gene name | |
| Location | Contig_2143:3127..3541 |
| Strand | - |
| Gene length (bp) | 414 |
| Transcript length (bp) | 414 |
| Coding sequence length (bp) | 414 |
| Protein length (aa) | 138 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00282 | Pyridoxal_deC | Pyridoxal-dependent decarboxylase conserved domain | 2.8E-07 | 2 | 65 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9Y600|CSAD_HUMAN | Cysteine sulfinic acid decarboxylase OS=Homo sapiens GN=CSAD PE=1 SV=2 | 2 | 136 | 6.0E-14 |
| sp|Q9DBE0|CSAD_MOUSE | Cysteine sulfinic acid decarboxylase OS=Mus musculus GN=Csad PE=1 SV=1 | 2 | 113 | 6.0E-13 |
| sp|Q64611|CSAD_RAT | Cysteine sulfinic acid decarboxylase OS=Rattus norvegicus GN=Csad PE=1 SV=1 | 2 | 136 | 1.0E-12 |
| sp|Q05329|DCE2_HUMAN | Glutamate decarboxylase 2 OS=Homo sapiens GN=GAD2 PE=1 SV=1 | 3 | 114 | 4.0E-10 |
| sp|Q4PRC2|DCE2_CANLF | Glutamate decarboxylase 2 OS=Canis lupus familiaris GN=GAD2 PE=2 SV=1 | 3 | 114 | 4.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9Y600|CSAD_HUMAN | Cysteine sulfinic acid decarboxylase OS=Homo sapiens GN=CSAD PE=1 SV=2 | 2 | 136 | 6.0E-14 |
| sp|Q9DBE0|CSAD_MOUSE | Cysteine sulfinic acid decarboxylase OS=Mus musculus GN=Csad PE=1 SV=1 | 2 | 113 | 6.0E-13 |
| sp|Q64611|CSAD_RAT | Cysteine sulfinic acid decarboxylase OS=Rattus norvegicus GN=Csad PE=1 SV=1 | 2 | 136 | 1.0E-12 |
| sp|Q05329|DCE2_HUMAN | Glutamate decarboxylase 2 OS=Homo sapiens GN=GAD2 PE=1 SV=1 | 3 | 114 | 4.0E-10 |
| sp|Q4PRC2|DCE2_CANLF | Glutamate decarboxylase 2 OS=Canis lupus familiaris GN=GAD2 PE=2 SV=1 | 3 | 114 | 4.0E-10 |
| sp|Q05683|DCE2_RAT | Glutamate decarboxylase 2 OS=Rattus norvegicus GN=Gad2 PE=1 SV=1 | 3 | 114 | 4.0E-10 |
| sp|P48320|DCE2_MOUSE | Glutamate decarboxylase 2 OS=Mus musculus GN=Gad2 PE=1 SV=1 | 3 | 114 | 6.0E-10 |
| sp|P48321|DCE2_PIG | Glutamate decarboxylase 2 OS=Sus scrofa GN=GAD2 PE=2 SV=1 | 3 | 114 | 7.0E-10 |
| sp|Q5R7S7|DCE1_PONAB | Glutamate decarboxylase 1 OS=Pongo abelii GN=GAD1 PE=2 SV=1 | 3 | 136 | 8.0E-10 |
| sp|Q99259|DCE1_HUMAN | Glutamate decarboxylase 1 OS=Homo sapiens GN=GAD1 PE=1 SV=1 | 3 | 136 | 8.0E-10 |
| sp|Q80WP8|GADL1_MOUSE | Acidic amino acid decarboxylase GADL1 OS=Mus musculus GN=Gadl1 PE=1 SV=3 | 2 | 136 | 9.0E-10 |
| sp|Q5IS68|DCE1_PANTR | Glutamate decarboxylase 1 OS=Pan troglodytes GN=GAD1 PE=2 SV=1 | 3 | 136 | 9.0E-10 |
| sp|P18088|DCE1_RAT | Glutamate decarboxylase 1 OS=Rattus norvegicus GN=Gad1 PE=2 SV=1 | 3 | 136 | 1.0E-09 |
| sp|P48319|DCE1_PIG | Glutamate decarboxylase 1 OS=Sus scrofa GN=GAD1 PE=2 SV=1 | 3 | 136 | 1.0E-09 |
| sp|P14748|DCE1_FELCA | Glutamate decarboxylase 1 OS=Felis catus GN=GAD1 PE=2 SV=3 | 3 | 136 | 1.0E-09 |
| sp|A0PA85|DCE1_CANLF | Glutamate decarboxylase 1 OS=Canis lupus familiaris GN=GAD1 PE=2 SV=1 | 3 | 136 | 1.0E-09 |
| sp|Q0VCA1|DCE1_BOVIN | Glutamate decarboxylase 1 OS=Bos taurus GN=GAD1 PE=2 SV=1 | 3 | 136 | 1.0E-09 |
| sp|P48318|DCE1_MOUSE | Glutamate decarboxylase 1 OS=Mus musculus GN=Gad1 PE=1 SV=2 | 3 | 136 | 1.0E-09 |
| sp|P20228|DCE_DROME | Glutamate decarboxylase OS=Drosophila melanogaster GN=Gad1 PE=2 SV=2 | 3 | 132 | 2.0E-08 |
| sp|A6QM00|GADL1_BOVIN | Acidic amino acid decarboxylase GADL1 OS=Bos taurus GN=GADL1 PE=2 SV=2 | 2 | 136 | 2.0E-08 |
| sp|Q6ZQY3|GADL1_HUMAN | Acidic amino acid decarboxylase GADL1 OS=Homo sapiens GN=GADL1 PE=1 SV=4 | 2 | 136 | 1.0E-07 |
| sp|Q28D99|GADL1_XENTR | Acidic amino acid decarboxylase GADL1 (Fragment) OS=Xenopus tropicalis GN=gadl1 PE=2 SV=2 | 2 | 132 | 2.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016831 | carboxy-lyase activity | Yes |
| GO:0030170 | pyridoxal phosphate binding | Yes |
| GO:0019752 | carboxylic acid metabolic process | Yes |
| GO:0044237 | cellular metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0008144 | drug binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0008150 | biological_process | No |
| GO:0016829 | lyase activity | No |
| GO:0008152 | metabolic process | No |
| GO:0043436 | oxoacid metabolic process | No |
| GO:0005488 | binding | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0009987 | cellular process | No |
| GO:0048037 | cofactor binding | No |
| GO:0050662 | coenzyme binding | No |
| GO:0006082 | organic acid metabolic process | No |
| GO:0016830 | carbon-carbon lyase activity | No |
| GO:0070279 | vitamin B6 binding | No |
| GO:0019842 | vitamin binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0043168 | anion binding | No |
| GO:0043167 | ion binding | No |
| GO:0044281 | small molecule metabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4159 LTLQCGRRGDSLKLALAWLYYGADGFERQIDHAFDMAALLHRRLASSANFHLLSADPPPCLQVCFYHAPAGALSD DGPANTRRTRAIVERLVHRGFMVDYAPGDRGSFLRVVVNVQTLPATVDGLARALDEVASEMA* |
| Coding | >Hirsu2|4159 CTGACGCTCCAGTGCGGCCGCCGCGGCGACAGCCTCAAGCTCGCCCTGGCCTGGCTCTACTACGGCGCCGACGGC TTCGAGCGCCAGATCGACCACGCCTTCGACATGGCCGCCCTCCTGCACCGCCGCCTCGCCTCCTCCGCCAACTTC CACCTGCTGTCCGCCGACCCGCCGCCCTGCCTGCAGGTCTGCTTCTACCACGCCCCGGCCGGCGCCCTGTCCGAC GACGGGCCGGCCAACACGCGCCGCACCCGCGCCATCGTCGAGCGCCTGGTCCACCGCGGCTTCATGGTCGACTAC GCCCCCGGCGACCGCGGGAGCTTCTTGCGCGTCGTCGTCAACGTCCAGACGCTGCCCGCCACCGTCGACGGCTTG GCCCGAGCCCTGGACGAGGTCGCTTCCGAGATGGCCTGA |
| Transcript | >Hirsu2|4159 CTGACGCTCCAGTGCGGCCGCCGCGGCGACAGCCTCAAGCTCGCCCTGGCCTGGCTCTACTACGGCGCCGACGGC TTCGAGCGCCAGATCGACCACGCCTTCGACATGGCCGCCCTCCTGCACCGCCGCCTCGCCTCCTCCGCCAACTTC CACCTGCTGTCCGCCGACCCGCCGCCCTGCCTGCAGGTCTGCTTCTACCACGCCCCGGCCGGCGCCCTGTCCGAC GACGGGCCGGCCAACACGCGCCGCACCCGCGCCATCGTCGAGCGCCTGGTCCACCGCGGCTTCATGGTCGACTAC GCCCCCGGCGACCGCGGGAGCTTCTTGCGCGTCGTCGTCAACGTCCAGACGCTGCCCGCCACCGTCGACGGCTTG GCCCGAGCCCTGGACGAGGTCGCTTCCGAGATGGCCTGA |
| Gene | >Hirsu2|4159 CTGACGCTCCAGTGCGGCCGCCGCGGCGACAGCCTCAAGCTCGCCCTGGCCTGGCTCTACTACGGCGCCGACGGC TTCGAGCGCCAGATCGACCACGCCTTCGACATGGCCGCCCTCCTGCACCGCCGCCTCGCCTCCTCCGCCAACTTC CACCTGCTGTCCGCCGACCCGCCGCCCTGCCTGCAGGTCTGCTTCTACCACGCCCCGGCCGGCGCCCTGTCCGAC GACGGGCCGGCCAACACGCGCCGCACCCGCGCCATCGTCGAGCGCCTGGTCCACCGCGGCTTCATGGTCGACTAC GCCCCCGGCGACCGCGGGAGCTTCTTGCGCGTCGTCGTCAACGTCCAGACGCTGCCCGCCACCGTCGACGGCTTG GCCCGAGCCCTGGACGAGGTCGCTTCCGAGATGGCCTGA |