© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|4131 |
| Gene name | |
| Location | Contig_2132:1161..3540 |
| Strand | - |
| Gene length (bp) | 2379 |
| Transcript length (bp) | 1869 |
| Coding sequence length (bp) | 1869 |
| Protein length (aa) | 623 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00641 | zf-RanBP | Zn-finger in Ran binding protein and others | 5.7E-11 | 350 | 377 |
| PF00641 | zf-RanBP | Zn-finger in Ran binding protein and others | 4.3E-07 | 429 | 458 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.9E-08 | 255 | 322 |
| PF00929 | RNase_T | Exonuclease | 1.0E-06 | 19 | 133 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13801|YE04_SCHPO | Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17H9.04c PE=1 SV=1 | 13 | 466 | 4.0E-124 |
| sp|P32770|NRP1_YEAST | Asparagine-rich protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NRP1 PE=1 SV=2 | 105 | 377 | 8.0E-79 |
| sp|P32770|NRP1_YEAST | Asparagine-rich protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NRP1 PE=1 SV=2 | 420 | 459 | 3.0E-08 |
| sp|Q8C460|ERI3_MOUSE | ERI1 exoribonuclease 3 OS=Mus musculus GN=Eri3 PE=1 SV=1 | 12 | 149 | 1.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Nuclear export signal | 0.6832 | 0.6038 | 0.0241 | 0.0324 | 0.0802 | 0.0046 | 0.1946 | 0.1553 | 0.1234 | 0.0041 |
| Orthofinder run ID | 4 |
| Orthogroup | 2667 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4131 MSSQPQLNIDRYVVIHVATTCDEHGVYVTKDSAEVIELGWILLDANSLEEITHESVLVKPVNTPITPLCTSLTTL TWEHVRNAGTFRDAISRFDTFATEYLTSKNNDFVFVTLDAWDLRVQLPREARDKAVVLPPYLQHSRTFDLRTEYQ RWQQHHPESLPFGPSMLSNICAALEVEPVQSSAPIKHNLPFHLQALAPASPRRAMEEAITLARVLRGLIRKSQPP QDHPDVLTRPMDARADVRAFLSERSKVLHMSGLPHDTTQSELESWFTQFGGRPIAFWTLRTPEQHKPTGTGFAVF SSHEEAAESLCMNGRALNEKAIEVSPSSSRVLDRAQDILTPFPPSKNRPRPGDWTCPSCGFSNFQRRTACFRCSF PAMGPGPAGEMGGSGGYGYNYGPPTMMPPPPHGGHHGPMGHGGRMGGGGVVPFRAGDWKCGNEVCGYHNFAKNVC CLRCGASRAGAAVVADSGYPSPMENASQYSMSQGSMAGTPGPGPGPFGSGNSFASGGGYNQHFGGPPSHFLPSGL GGAGTYPSSLNTQGFGAAPGTHSAGPFDSRAAEAAFQSATNGPASAGPGPSNNFYNSSNNGENDPFAFLSTGIGG LSVGGGDARQNGGGAPPSKSPA* |
| Coding | >Hirsu2|4131 ATGTCTTCGCAGCCGCAGCTCAACATCGACCGCTACGTCGTCATCCACGTCGCCACCACTTGCGATGAACACGGC GTCTACGTCACCAAGGACTCGGCCGAGGTCATCGAGCTTGGCTGGATTCTCCTCGACGCCAACTCGCTTGAGGAG ATTACCCACGAGAGTGTTCTTGTCAAGCCGGTCAACACTCCCATCACTCCGCTCTGCACAAGTCTGACGACTCTC ACTTGGGAGCATGTTCGAAACGCCGGTACCTTTAGAGACGCTATCTCTCGATTCGACACGTTTGCTACCGAGTAT CTGACCTCCAAGAACAACGACTTCGTCTTCGTCACCCTCGACGCATGGGACCTCCGCGTCCAGCTGCCCCGCGAG GCACGCGACAAGGCTGTTGTGCTCCCACCCTACCTGCAGCATTCGCGCACCTTTGACTTGCGCACCGAGTATCAG CGATGGCAGCAGCACCACCCCGAATCCCTGCCCTTCGGGCCCTCCATGCTGTCCAACATCTGCGCCGCCCTCGAG GTCGAGCCCGTCCAGTCGAGCGCCCCGATCAAGCACAACCTGCCCTTCCACCTCCAGGCCCTTGCTCCCGCCTCG CCGCGCCGCGCCATGGAGGAGGCCATCACCCTGGCCCGCGTCCTCCGCGGTCTCATCCGCAAGTCGCAGCCGCCA CAGGACCACCCCGACGTCTTGACCAGGCCCATGGACGCCAGGGCCGACGTGCGCGCCTTTCTGTCCGAGAGGAGC AAGGTGCTCCACATGTCTGGCCTCCCGCACGACACCACCCAGTCGGAGCTCGAGAGCTGGTTCACCCAGTTCGGC GGACGACCCATCGCCTTTTGGACCCTGCGCACCCCGGAGCAGCACAAGCCGACCGGCACCGGCTTCGCCGTCTTC TCCTCCCATGAGGAGGCCGCCGAGAGCCTCTGCATGAACGGCCGTGCGCTCAACGAAAAGGCCATCGAGGTGTCT CCCTCGTCCAGCCGCGTCTTGGATCGCGCGCAGGATATCCTGACGCCCTTCCCCCCGAGCAAGAATCGTCCCCGG CCCGGCGACTGGACGTGTCCCTCGTGCGGCTTCTCCAACTTTCAGCGCCGAACTGCCTGCTTCCGATGCTCTTTC CCGGCCATGGGGCCCGGCCCCGCCGGCGAGATGGGCGGCAGCGGCGGTTACGGCTACAACTACGGCCCCCCGACC ATGATGCCGCCTCCCCCGCACGGCGGCCACCACGGCCCCATGGGCCACGGCGGGCGCATGGGCGGCGGCGGCGTC GTCCCTTTCCGCGCCGGCGACTGGAAGTGCGGCAACGAGGTGTGTGGCTACCACAACTTCGCCAAGAATGTGTGC TGCCTCCGCTGCGGCGCCAGCCGCGCCGGGGCCGCCGTCGTGGCCGACTCGGGCTACCCGTCCCCGATGGAGAAC GCGTCGCAGTACAGCATGAGCCAGGGCTCCATGGCCGGCACGCCCGGCCCGGGCCCCGGCCCCTTCGGCTCCGGC AACTCGTTCGCGTCTGGCGGCGGCTACAACCAGCACTTCGGCGGGCCGCCCAGCCACTTCCTGCCGTCCGGCCTC GGCGGCGCCGGGACGTATCCCAGCTCGCTCAACACGCAGGGCTTCGGAGCGGCGCCCGGCACTCACTCGGCGGGG CCGTTCGACAGCAGGGCCGCCGAGGCCGCCTTCCAGTCGGCGACCAACGGTCCCGCGTCGGCAGGCCCCGGGCCG TCGAACAACTTCTACAACAGCAGCAACAACGGCGAGAACGACCCGTTCGCCTTCCTGTCGACGGGCATCGGCGGC CTCTCGGTCGGGGGCGGCGACGCTCGCCAGAACGGCGGGGGCGCGCCGCCGAGCAAGTCGCCCGCCTAA |
| Transcript | >Hirsu2|4131 ATGTCTTCGCAGCCGCAGCTCAACATCGACCGCTACGTCGTCATCCACGTCGCCACCACTTGCGATGAACACGGC GTCTACGTCACCAAGGACTCGGCCGAGGTCATCGAGCTTGGCTGGATTCTCCTCGACGCCAACTCGCTTGAGGAG ATTACCCACGAGAGTGTTCTTGTCAAGCCGGTCAACACTCCCATCACTCCGCTCTGCACAAGTCTGACGACTCTC ACTTGGGAGCATGTTCGAAACGCCGGTACCTTTAGAGACGCTATCTCTCGATTCGACACGTTTGCTACCGAGTAT CTGACCTCCAAGAACAACGACTTCGTCTTCGTCACCCTCGACGCATGGGACCTCCGCGTCCAGCTGCCCCGCGAG GCACGCGACAAGGCTGTTGTGCTCCCACCCTACCTGCAGCATTCGCGCACCTTTGACTTGCGCACCGAGTATCAG CGATGGCAGCAGCACCACCCCGAATCCCTGCCCTTCGGGCCCTCCATGCTGTCCAACATCTGCGCCGCCCTCGAG GTCGAGCCCGTCCAGTCGAGCGCCCCGATCAAGCACAACCTGCCCTTCCACCTCCAGGCCCTTGCTCCCGCCTCG CCGCGCCGCGCCATGGAGGAGGCCATCACCCTGGCCCGCGTCCTCCGCGGTCTCATCCGCAAGTCGCAGCCGCCA CAGGACCACCCCGACGTCTTGACCAGGCCCATGGACGCCAGGGCCGACGTGCGCGCCTTTCTGTCCGAGAGGAGC AAGGTGCTCCACATGTCTGGCCTCCCGCACGACACCACCCAGTCGGAGCTCGAGAGCTGGTTCACCCAGTTCGGC GGACGACCCATCGCCTTTTGGACCCTGCGCACCCCGGAGCAGCACAAGCCGACCGGCACCGGCTTCGCCGTCTTC TCCTCCCATGAGGAGGCCGCCGAGAGCCTCTGCATGAACGGCCGTGCGCTCAACGAAAAGGCCATCGAGGTGTCT CCCTCGTCCAGCCGCGTCTTGGATCGCGCGCAGGATATCCTGACGCCCTTCCCCCCGAGCAAGAATCGTCCCCGG CCCGGCGACTGGACGTGTCCCTCGTGCGGCTTCTCCAACTTTCAGCGCCGAACTGCCTGCTTCCGATGCTCTTTC CCGGCCATGGGGCCCGGCCCCGCCGGCGAGATGGGCGGCAGCGGCGGTTACGGCTACAACTACGGCCCCCCGACC ATGATGCCGCCTCCCCCGCACGGCGGCCACCACGGCCCCATGGGCCACGGCGGGCGCATGGGCGGCGGCGGCGTC GTCCCTTTCCGCGCCGGCGACTGGAAGTGCGGCAACGAGGTGTGTGGCTACCACAACTTCGCCAAGAATGTGTGC TGCCTCCGCTGCGGCGCCAGCCGCGCCGGGGCCGCCGTCGTGGCCGACTCGGGCTACCCGTCCCCGATGGAGAAC GCGTCGCAGTACAGCATGAGCCAGGGCTCCATGGCCGGCACGCCCGGCCCGGGCCCCGGCCCCTTCGGCTCCGGC AACTCGTTCGCGTCTGGCGGCGGCTACAACCAGCACTTCGGCGGGCCGCCCAGCCACTTCCTGCCGTCCGGCCTC GGCGGCGCCGGGACGTATCCCAGCTCGCTCAACACGCAGGGCTTCGGAGCGGCGCCCGGCACTCACTCGGCGGGG CCGTTCGACAGCAGGGCCGCCGAGGCCGCCTTCCAGTCGGCGACCAACGGTCCCGCGTCGGCAGGCCCCGGGCCG TCGAACAACTTCTACAACAGCAGCAACAACGGCGAGAACGACCCGTTCGCCTTCCTGTCGACGGGCATCGGCGGC CTCTCGGTCGGGGGCGGCGACGCTCGCCAGAACGGCGGGGGCGCGCCGCCGAGCAAGTCGCCCGCCTAA |
| Gene | >Hirsu2|4131 ATGTCTTCGCAGCCGCAGCTCAACATCGACCGCTACGTCGTCATCCACGTCGCCACCACTTGCGATGAACACGGC GTCTACGTCACCAAGGACTCGGCCGAGGTCATCGAGCTTGGCTGGATTCTCCTCGACGCCAACTCGCTTGAGGAG GTGAGTAGCTTGGGATCCCGCGACGCCTCACGCCACCACCAACTCCTCCCGCCGCCTCCTCCTCATCCATCTCCT CCCCACGCTCCTCGCGTTCCTCCGCCTCGTCTTCTCCTCGCGCTCCTCCGCCTCCTCCGCCTTCTCCTCCTCCTC TTTCCCCATCTCCTCCTCGTCCAACGTGGCCGCACCACCTCTGACCTGCTCCGCCTCAAAACGCAACAGATTACC CACGAGAGTGTTCTTGTCAAGCCGGTCAACACTCCCATCACTCCGCTCTGCAGTAAGTCCTCCCAATTCTCCCTC CCTCCTGTCCCGCCTGAGCTGTCCTTCTCGCCCGGCCTCTGCCCCCCAAGTGCAAACGTACCGCCGCCTCCCCCG CCTTCACGCCGTGCAAACGCACCAACTCGCTTGAGCGGCCATGTCTTCACGCGTGCCGGAATCGGGCTTACCATC ATGTCTCCTTAGCAAGTCTGACGACTCTCACTTGGGAGCATGTTCGAAACGCCGGTACCTTTAGAGACGCTATCT CTCGATTCGACACGTTTGCTACCGAGTATCTGACCTCCAAGAACAACGACTTCGTCTTCGTCACCCTCGACGCAT GGGACCTCCGCGTCCAGCTGCCCCGCGAGGCACGCGACAAGGCTGTTGTGCTCCCACCCTACCTGCAGCATTCGC GCACCTTTGACTTGCGCACCGAGTATCAGCGATGGCAGCAGCACCACCCCGAATCCCTGCCCTTCGGGCCCTCCA TGCTGTCCAACATCTGCGCCGCCCTCGAGGTCGAGCCCGTCCAGTCGAGCGCCCCGATCAAGCACAACCTGCCCT TCCACCTCCAGGCCCTTGCTCCCGCCTCGCCGCGCCGCGCCATGGAGGAGGCCATCACCCTGGCCCGCGTCCTCC GCGGTCTCATCCGCAAGTCGCAGCCGCCACAGGACCACCCCGACGTCTTGACCAGGCCCATGGACGCCAGGGCCG ACGTGCGCGCCTTTCTGTCCGAGAGGAGCAAGGTGCTCCACATGTCTGGCCTCCCGCACGACACCACCCAGTCGG AGCTCGAGAGCTGGTTCACCCAGTTCGGCGGACGACCCATCGCCTTTTGGACCCTGCGCACCCCGGAGCAGCACA AGCCGACCGGCACCGGCTTCGCCGTCTTCTCCTCCCATGAGGAGGTAAGTCGCACCTCCTTCACGCTCCATCTGC AAACTTTGCCCGTCCCGGCCCTCGCAGCCGCCGGGCCAGCTCTGCGGGATGAACGGATGCTGACCAGACAAACAG GCCGCCGAGAGCCTCTGCATGAACGGCCGTGCGCTCAACGAAAAGGCCATCGAGGTGTCTCCCTCGTCCAGCCGC GTCTTGGATCGCGCGCAGGATATCCTGACGCCCTTCCCCCCGAGCAAGAATCGTCCCCGGCCCGGCGACTGGACG TGTCCCTCGTGCGGCTTCTCCAACTTTCAGCGCCGAACTGCCTGCTTCCGATGCTCTTTCCCGGCCATGGGGCCC GGCCCCGCCGGCGAGATGGGCGGCAGCGGCGGTTACGGCTACAACTACGGCCCCCCGACCATGATGCCGCCTCCC CCGCACGGCGGCCACCACGGCCCCATGGGCCACGGCGGGCGCATGGGCGGCGGCGGCGTCGTCCCTTTCCGCGCC GGCGACTGGAAGTGCGGCAACGAGGTGTGTGGCTACCACAACTTCGCCAAGAATGTGTGCTGCCTCCGCTGCGGC GCCAGCCGCGCCGGGGCCGCCGTCGTGGCCGACTCGGGCTACCCGTCCCCGATGGAGAACGCGTCGCAGTACAGC ATGAGCCAGGGCTCCATGGCCGGCACGCCCGGCCCGGGCCCCGGCCCCTTCGGCTCCGGCAACTCGTTCGCGTCT GGCGGCGGCTACAACCAGCACTTCGGCGGGCCGCCCAGCCACTTCCTGCCGTCCGGCCTCGGCGGCGCCGGGACG TATCCCAGCTCGCTCAACACGCAGGGCTTCGGAGCGGCGCCCGGCACTCACTCGGCGGGGCCGTTCGACAGCAGG GCCGCCGAGGCCGCCTTCCAGTCGGCGACCAACGGTCCCGCGTCGGCAGGCCCCGGGCCGTCGAACAACTTCTAC AACAGCAGCAACAACGGCGAGAACGACCCGTTCGCCTTCCTGTCGACGGGCATCGGCGGCCTCTCGGTCGGGGGC GGCGACGCTCGCCAGAACGGCGGGGGCGCGCCGCCGAGCAAGTCGCCCGCCTAA |