Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Aspergillus niger CBS 112.32 Aspergillus niger CBS 113.50 Aspergillus niger CBS 115988 Aspergillus niger CBS 115989 Aspergillus niger CBS 118.52 Aspergillus niger CBS 124.48 Aspergillus niger CBS 131.52 Aspergillus niger CBS 133816 Aspergillus niger CBS 147320 Aspergillus niger CBS 147321 Aspergillus niger CBS 147322 Aspergillus niger CBS 147323 Aspergillus niger CBS 147324 Aspergillus niger CBS 147343 Aspergillus niger CBS 147344 Aspergillus niger CBS 147345 Aspergillus niger CBS 147346 Aspergillus niger CBS 147347 Aspergillus niger CBS 147352 Aspergillus niger CBS 147353 Aspergillus niger CBS 147371 Aspergillus niger CBS 147482 Aspergillus niger CBS 630.78 Aspergillus niger CBS 769.97 Niveomyces coronatus CBS 149186 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280 Torrubiellomyces zombiae CBS 149187

General Properties

Protein ID	Hirsu2|4131
Gene name
Location	Contig_2132:1161..3540
Strand	-
Gene length (bp)	2379
Transcript length (bp)	1869
Coding sequence length (bp)	1869
Protein length (aa)	623

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00641	zf-RanBP	Zn-finger in Ran binding protein and others	5.7E-11	350	377
PF00641	zf-RanBP	Zn-finger in Ran binding protein and others	4.3E-07	429	458
PF00076	RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	5.9E-08	255	322
PF00929	RNase_T	Exonuclease	1.0E-06	19	133

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp|O13801|YE04_SCHPO	Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17H9.04c PE=1 SV=1	13	466	4.0E-124
sp|P32770|NRP1_YEAST	Asparagine-rich protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NRP1 PE=1 SV=2	105	377	8.0E-79
sp|P32770|NRP1_YEAST	Asparagine-rich protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NRP1 PE=1 SV=2	420	459	3.0E-08
sp|Q8C460|ERI3_MOUSE	ERI1 exoribonuclease 3 OS=Mus musculus GN=Eri3 PE=1 SV=1	12	149	1.0E-07

GO

GO Term	Description	Terminal node
GO:0003723	RNA binding	Yes
GO:0097159	organic cyclic compound binding	No
GO:0005488	binding	No
GO:1901363	heterocyclic compound binding	No
GO:0003676	nucleic acid binding	No
GO:0003674	molecular_function	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 12	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2|4131 MSSQPQLNIDRYVVIHVATTCDEHGVYVTKDSAEVIELGWILLDANSLEEITHESVLVKPVNTPITPLCTSLTTL TWEHVRNAGTFRDAISRFDTFATEYLTSKNNDFVFVTLDAWDLRVQLPREARDKAVVLPPYLQHSRTFDLRTEYQ RWQQHHPESLPFGPSMLSNICAALEVEPVQSSAPIKHNLPFHLQALAPASPRRAMEEAITLARVLRGLIRKSQPP QDHPDVLTRPMDARADVRAFLSERSKVLHMSGLPHDTTQSELESWFTQFGGRPIAFWTLRTPEQHKPTGTGFAVF SSHEEAAESLCMNGRALNEKAIEVSPSSSRVLDRAQDILTPFPPSKNRPRPGDWTCPSCGFSNFQRRTACFRCSF PAMGPGPAGEMGGSGGYGYNYGPPTMMPPPPHGGHHGPMGHGGRMGGGGVVPFRAGDWKCGNEVCGYHNFAKNVC CLRCGASRAGAAVVADSGYPSPMENASQYSMSQGSMAGTPGPGPGPFGSGNSFASGGGYNQHFGGPPSHFLPSGL GGAGTYPSSLNTQGFGAAPGTHSAGPFDSRAAEAAFQSATNGPASAGPGPSNNFYNSSNNGENDPFAFLSTGIGG LSVGGGDARQNGGGAPPSKSPA*
Coding	>Hirsu2|4131 ATGTCTTCGCAGCCGCAGCTCAACATCGACCGCTACGTCGTCATCCACGTCGCCACCACTTGCGATGAACACGGC GTCTACGTCACCAAGGACTCGGCCGAGGTCATCGAGCTTGGCTGGATTCTCCTCGACGCCAACTCGCTTGAGGAG ATTACCCACGAGAGTGTTCTTGTCAAGCCGGTCAACACTCCCATCACTCCGCTCTGCACAAGTCTGACGACTCTC ACTTGGGAGCATGTTCGAAACGCCGGTACCTTTAGAGACGCTATCTCTCGATTCGACACGTTTGCTACCGAGTAT CTGACCTCCAAGAACAACGACTTCGTCTTCGTCACCCTCGACGCATGGGACCTCCGCGTCCAGCTGCCCCGCGAG GCACGCGACAAGGCTGTTGTGCTCCCACCCTACCTGCAGCATTCGCGCACCTTTGACTTGCGCACCGAGTATCAG CGATGGCAGCAGCACCACCCCGAATCCCTGCCCTTCGGGCCCTCCATGCTGTCCAACATCTGCGCCGCCCTCGAG GTCGAGCCCGTCCAGTCGAGCGCCCCGATCAAGCACAACCTGCCCTTCCACCTCCAGGCCCTTGCTCCCGCCTCG CCGCGCCGCGCCATGGAGGAGGCCATCACCCTGGCCCGCGTCCTCCGCGGTCTCATCCGCAAGTCGCAGCCGCCA CAGGACCACCCCGACGTCTTGACCAGGCCCATGGACGCCAGGGCCGACGTGCGCGCCTTTCTGTCCGAGAGGAGC AAGGTGCTCCACATGTCTGGCCTCCCGCACGACACCACCCAGTCGGAGCTCGAGAGCTGGTTCACCCAGTTCGGC GGACGACCCATCGCCTTTTGGACCCTGCGCACCCCGGAGCAGCACAAGCCGACCGGCACCGGCTTCGCCGTCTTC TCCTCCCATGAGGAGGCCGCCGAGAGCCTCTGCATGAACGGCCGTGCGCTCAACGAAAAGGCCATCGAGGTGTCT CCCTCGTCCAGCCGCGTCTTGGATCGCGCGCAGGATATCCTGACGCCCTTCCCCCCGAGCAAGAATCGTCCCCGG CCCGGCGACTGGACGTGTCCCTCGTGCGGCTTCTCCAACTTTCAGCGCCGAACTGCCTGCTTCCGATGCTCTTTC CCGGCCATGGGGCCCGGCCCCGCCGGCGAGATGGGCGGCAGCGGCGGTTACGGCTACAACTACGGCCCCCCGACC ATGATGCCGCCTCCCCCGCACGGCGGCCACCACGGCCCCATGGGCCACGGCGGGCGCATGGGCGGCGGCGGCGTC GTCCCTTTCCGCGCCGGCGACTGGAAGTGCGGCAACGAGGTGTGTGGCTACCACAACTTCGCCAAGAATGTGTGC TGCCTCCGCTGCGGCGCCAGCCGCGCCGGGGCCGCCGTCGTGGCCGACTCGGGCTACCCGTCCCCGATGGAGAAC GCGTCGCAGTACAGCATGAGCCAGGGCTCCATGGCCGGCACGCCCGGCCCGGGCCCCGGCCCCTTCGGCTCCGGC AACTCGTTCGCGTCTGGCGGCGGCTACAACCAGCACTTCGGCGGGCCGCCCAGCCACTTCCTGCCGTCCGGCCTC GGCGGCGCCGGGACGTATCCCAGCTCGCTCAACACGCAGGGCTTCGGAGCGGCGCCCGGCACTCACTCGGCGGGG CCGTTCGACAGCAGGGCCGCCGAGGCCGCCTTCCAGTCGGCGACCAACGGTCCCGCGTCGGCAGGCCCCGGGCCG TCGAACAACTTCTACAACAGCAGCAACAACGGCGAGAACGACCCGTTCGCCTTCCTGTCGACGGGCATCGGCGGC CTCTCGGTCGGGGGCGGCGACGCTCGCCAGAACGGCGGGGGCGCGCCGCCGAGCAAGTCGCCCGCCTAA
Transcript	>Hirsu2|4131 ATGTCTTCGCAGCCGCAGCTCAACATCGACCGCTACGTCGTCATCCACGTCGCCACCACTTGCGATGAACACGGC GTCTACGTCACCAAGGACTCGGCCGAGGTCATCGAGCTTGGCTGGATTCTCCTCGACGCCAACTCGCTTGAGGAG ATTACCCACGAGAGTGTTCTTGTCAAGCCGGTCAACACTCCCATCACTCCGCTCTGCACAAGTCTGACGACTCTC ACTTGGGAGCATGTTCGAAACGCCGGTACCTTTAGAGACGCTATCTCTCGATTCGACACGTTTGCTACCGAGTAT CTGACCTCCAAGAACAACGACTTCGTCTTCGTCACCCTCGACGCATGGGACCTCCGCGTCCAGCTGCCCCGCGAG GCACGCGACAAGGCTGTTGTGCTCCCACCCTACCTGCAGCATTCGCGCACCTTTGACTTGCGCACCGAGTATCAG CGATGGCAGCAGCACCACCCCGAATCCCTGCCCTTCGGGCCCTCCATGCTGTCCAACATCTGCGCCGCCCTCGAG GTCGAGCCCGTCCAGTCGAGCGCCCCGATCAAGCACAACCTGCCCTTCCACCTCCAGGCCCTTGCTCCCGCCTCG CCGCGCCGCGCCATGGAGGAGGCCATCACCCTGGCCCGCGTCCTCCGCGGTCTCATCCGCAAGTCGCAGCCGCCA CAGGACCACCCCGACGTCTTGACCAGGCCCATGGACGCCAGGGCCGACGTGCGCGCCTTTCTGTCCGAGAGGAGC AAGGTGCTCCACATGTCTGGCCTCCCGCACGACACCACCCAGTCGGAGCTCGAGAGCTGGTTCACCCAGTTCGGC GGACGACCCATCGCCTTTTGGACCCTGCGCACCCCGGAGCAGCACAAGCCGACCGGCACCGGCTTCGCCGTCTTC TCCTCCCATGAGGAGGCCGCCGAGAGCCTCTGCATGAACGGCCGTGCGCTCAACGAAAAGGCCATCGAGGTGTCT CCCTCGTCCAGCCGCGTCTTGGATCGCGCGCAGGATATCCTGACGCCCTTCCCCCCGAGCAAGAATCGTCCCCGG CCCGGCGACTGGACGTGTCCCTCGTGCGGCTTCTCCAACTTTCAGCGCCGAACTGCCTGCTTCCGATGCTCTTTC CCGGCCATGGGGCCCGGCCCCGCCGGCGAGATGGGCGGCAGCGGCGGTTACGGCTACAACTACGGCCCCCCGACC ATGATGCCGCCTCCCCCGCACGGCGGCCACCACGGCCCCATGGGCCACGGCGGGCGCATGGGCGGCGGCGGCGTC GTCCCTTTCCGCGCCGGCGACTGGAAGTGCGGCAACGAGGTGTGTGGCTACCACAACTTCGCCAAGAATGTGTGC TGCCTCCGCTGCGGCGCCAGCCGCGCCGGGGCCGCCGTCGTGGCCGACTCGGGCTACCCGTCCCCGATGGAGAAC GCGTCGCAGTACAGCATGAGCCAGGGCTCCATGGCCGGCACGCCCGGCCCGGGCCCCGGCCCCTTCGGCTCCGGC AACTCGTTCGCGTCTGGCGGCGGCTACAACCAGCACTTCGGCGGGCCGCCCAGCCACTTCCTGCCGTCCGGCCTC GGCGGCGCCGGGACGTATCCCAGCTCGCTCAACACGCAGGGCTTCGGAGCGGCGCCCGGCACTCACTCGGCGGGG CCGTTCGACAGCAGGGCCGCCGAGGCCGCCTTCCAGTCGGCGACCAACGGTCCCGCGTCGGCAGGCCCCGGGCCG TCGAACAACTTCTACAACAGCAGCAACAACGGCGAGAACGACCCGTTCGCCTTCCTGTCGACGGGCATCGGCGGC CTCTCGGTCGGGGGCGGCGACGCTCGCCAGAACGGCGGGGGCGCGCCGCCGAGCAAGTCGCCCGCCTAA
Gene	>Hirsu2|4131 ATGTCTTCGCAGCCGCAGCTCAACATCGACCGCTACGTCGTCATCCACGTCGCCACCACTTGCGATGAACACGGC GTCTACGTCACCAAGGACTCGGCCGAGGTCATCGAGCTTGGCTGGATTCTCCTCGACGCCAACTCGCTTGAGGAG GTGAGTAGCTTGGGATCCCGCGACGCCTCACGCCACCACCAACTCCTCCCGCCGCCTCCTCCTCATCCATCTCCT CCCCACGCTCCTCGCGTTCCTCCGCCTCGTCTTCTCCTCGCGCTCCTCCGCCTCCTCCGCCTTCTCCTCCTCCTC TTTCCCCATCTCCTCCTCGTCCAACGTGGCCGCACCACCTCTGACCTGCTCCGCCTCAAAACGCAACAGATTACC CACGAGAGTGTTCTTGTCAAGCCGGTCAACACTCCCATCACTCCGCTCTGCAGTAAGTCCTCCCAATTCTCCCTC CCTCCTGTCCCGCCTGAGCTGTCCTTCTCGCCCGGCCTCTGCCCCCCAAGTGCAAACGTACCGCCGCCTCCCCCG CCTTCACGCCGTGCAAACGCACCAACTCGCTTGAGCGGCCATGTCTTCACGCGTGCCGGAATCGGGCTTACCATC ATGTCTCCTTAGCAAGTCTGACGACTCTCACTTGGGAGCATGTTCGAAACGCCGGTACCTTTAGAGACGCTATCT CTCGATTCGACACGTTTGCTACCGAGTATCTGACCTCCAAGAACAACGACTTCGTCTTCGTCACCCTCGACGCAT GGGACCTCCGCGTCCAGCTGCCCCGCGAGGCACGCGACAAGGCTGTTGTGCTCCCACCCTACCTGCAGCATTCGC GCACCTTTGACTTGCGCACCGAGTATCAGCGATGGCAGCAGCACCACCCCGAATCCCTGCCCTTCGGGCCCTCCA TGCTGTCCAACATCTGCGCCGCCCTCGAGGTCGAGCCCGTCCAGTCGAGCGCCCCGATCAAGCACAACCTGCCCT TCCACCTCCAGGCCCTTGCTCCCGCCTCGCCGCGCCGCGCCATGGAGGAGGCCATCACCCTGGCCCGCGTCCTCC GCGGTCTCATCCGCAAGTCGCAGCCGCCACAGGACCACCCCGACGTCTTGACCAGGCCCATGGACGCCAGGGCCG ACGTGCGCGCCTTTCTGTCCGAGAGGAGCAAGGTGCTCCACATGTCTGGCCTCCCGCACGACACCACCCAGTCGG AGCTCGAGAGCTGGTTCACCCAGTTCGGCGGACGACCCATCGCCTTTTGGACCCTGCGCACCCCGGAGCAGCACA AGCCGACCGGCACCGGCTTCGCCGTCTTCTCCTCCCATGAGGAGGTAAGTCGCACCTCCTTCACGCTCCATCTGC AAACTTTGCCCGTCCCGGCCCTCGCAGCCGCCGGGCCAGCTCTGCGGGATGAACGGATGCTGACCAGACAAACAG GCCGCCGAGAGCCTCTGCATGAACGGCCGTGCGCTCAACGAAAAGGCCATCGAGGTGTCTCCCTCGTCCAGCCGC GTCTTGGATCGCGCGCAGGATATCCTGACGCCCTTCCCCCCGAGCAAGAATCGTCCCCGGCCCGGCGACTGGACG TGTCCCTCGTGCGGCTTCTCCAACTTTCAGCGCCGAACTGCCTGCTTCCGATGCTCTTTCCCGGCCATGGGGCCC GGCCCCGCCGGCGAGATGGGCGGCAGCGGCGGTTACGGCTACAACTACGGCCCCCCGACCATGATGCCGCCTCCC CCGCACGGCGGCCACCACGGCCCCATGGGCCACGGCGGGCGCATGGGCGGCGGCGGCGTCGTCCCTTTCCGCGCC GGCGACTGGAAGTGCGGCAACGAGGTGTGTGGCTACCACAACTTCGCCAAGAATGTGTGCTGCCTCCGCTGCGGC GCCAGCCGCGCCGGGGCCGCCGTCGTGGCCGACTCGGGCTACCCGTCCCCGATGGAGAACGCGTCGCAGTACAGC ATGAGCCAGGGCTCCATGGCCGGCACGCCCGGCCCGGGCCCCGGCCCCTTCGGCTCCGGCAACTCGTTCGCGTCT GGCGGCGGCTACAACCAGCACTTCGGCGGGCCGCCCAGCCACTTCCTGCCGTCCGGCCTCGGCGGCGCCGGGACG TATCCCAGCTCGCTCAACACGCAGGGCTTCGGAGCGGCGCCCGGCACTCACTCGGCGGGGCCGTTCGACAGCAGG GCCGCCGAGGCCGCCTTCCAGTCGGCGACCAACGGTCCCGCGTCGGCAGGCCCCGGGCCGTCGAACAACTTCTAC AACAGCAGCAACAACGGCGAGAACGACCCGTTCGCCTTCCTGTCGACGGGCATCGGCGGCCTCTCGGTCGGGGGC GGCGACGCTCGCCAGAACGGCGGGGGCGCGCCGCCGAGCAAGTCGCCCGCCTAA