© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|4095 |
| Gene name | |
| Location | Contig_212:2511..3264 |
| Strand | - |
| Gene length (bp) | 753 |
| Transcript length (bp) | 753 |
| Coding sequence length (bp) | 753 |
| Protein length (aa) | 251 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12906 | RINGv | RING-variant domain | 1.4E-08 | 20 | 60 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q0P496|MARH4_DANRE | E3 ubiquitin-protein ligase MARCH4 OS=Danio rerio GN=march4 PE=2 SV=1 | 17 | 100 | 2.0E-07 |
| sp|Q86YJ5|MARH9_HUMAN | E3 ubiquitin-protein ligase MARCH9 OS=Homo sapiens GN=MARCH9 PE=1 SV=2 | 17 | 95 | 3.0E-07 |
| sp|Q3TZ87|MARH9_MOUSE | E3 ubiquitin-protein ligase MARCH9 OS=Mus musculus GN=March9 PE=2 SV=1 | 17 | 95 | 3.0E-07 |
| sp|Q80TE3|MARH4_MOUSE | E3 ubiquitin-protein ligase MARCH4 OS=Mus musculus GN=March4 PE=2 SV=3 | 17 | 100 | 6.0E-07 |
| sp|A6P320|MARHB_RAT | E3 ubiquitin-protein ligase MARCH11 OS=Rattus norvegicus GN=March11 PE=1 SV=1 | 18 | 99 | 6.0E-07 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q0P496|MARH4_DANRE | E3 ubiquitin-protein ligase MARCH4 OS=Danio rerio GN=march4 PE=2 SV=1 | 17 | 100 | 2.0E-07 |
| sp|Q86YJ5|MARH9_HUMAN | E3 ubiquitin-protein ligase MARCH9 OS=Homo sapiens GN=MARCH9 PE=1 SV=2 | 17 | 95 | 3.0E-07 |
| sp|Q3TZ87|MARH9_MOUSE | E3 ubiquitin-protein ligase MARCH9 OS=Mus musculus GN=March9 PE=2 SV=1 | 17 | 95 | 3.0E-07 |
| sp|Q80TE3|MARH4_MOUSE | E3 ubiquitin-protein ligase MARCH4 OS=Mus musculus GN=March4 PE=2 SV=3 | 17 | 100 | 6.0E-07 |
| sp|A6P320|MARHB_RAT | E3 ubiquitin-protein ligase MARCH11 OS=Rattus norvegicus GN=March11 PE=1 SV=1 | 18 | 99 | 6.0E-07 |
| sp|Q8CBH7|MARHB_MOUSE | E3 ubiquitin-protein ligase MARCH11 OS=Mus musculus GN=March11 PE=2 SV=2 | 18 | 99 | 7.0E-07 |
| sp|Q9P2E8|MARH4_HUMAN | E3 ubiquitin-protein ligase MARCH4 OS=Homo sapiens GN=MARCH4 PE=2 SV=2 | 17 | 100 | 7.0E-07 |
| sp|A6NNE9|MARHB_HUMAN | E3 ubiquitin-protein ligase MARCH11 OS=Homo sapiens GN=MARCH11 PE=2 SV=3 | 18 | 99 | 1.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008270 | zinc ion binding | Yes |
| GO:0046872 | metal ion binding | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0003674 | molecular_function | No |
| GO:0043169 | cation binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 82 | 104 | 22 |
| 2 | 148 | 170 | 22 |
| 3 | 191 | 209 | 18 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4095 LGISSASSRPSYVSDDPELGRLLSPCKCKGSQKYVHEGCLNSWRLANPMAERNYWQCPTCKFNYRLARLHWASML SSKWAQVTVTLAVLIVGIFILGFIADPILDLWFDPVGTISDTVTSVVSDVEAIRPPPFEESVSWTEHFAKGFFSL GFVGFIKSVVAMGPWQWLNLRTSGLLGSGRRRGTGRARMDNFNLVFVLIGAFTFLMAIWKAVRAISTRVLNNVSD KVLDVSEDDGDEAEDDADEENKKDQ* |
| Coding | >Hirsu2|4095 CTGGGCATCTCGTCGGCTTCGTCGCGCCCGTCCTATGTTTCGGACGACCCCGAACTTGGCCGGCTGTTGTCGCCC TGCAAATGCAAGGGCTCGCAGAAGTATGTCCACGAAGGCTGCCTCAACTCGTGGCGGCTGGCGAACCCCATGGCC GAGAGGAACTACTGGCAGTGTCCGACGTGCAAGTTCAACTACAGGCTGGCGCGGCTGCACTGGGCCTCGATGCTG AGCAGCAAGTGGGCTCAGGTGACGGTAACTCTGGCCGTTTTGATAGTGGGCATCTTCATTCTCGGCTTCATCGCG GATCCCATCCTGGATCTGTGGTTTGATCCCGTGGGCACCATTAGCGACACCGTCACAAGCGTGGTTTCGGACGTC GAGGCCATCAGGCCCCCGCCCTTCGAAGAGTCGGTCTCGTGGACAGAGCACTTTGCCAAGGGCTTCTTCTCACTC GGCTTTGTGGGCTTTATCAAATCCGTGGTTGCAATGGGGCCCTGGCAGTGGCTGAACCTTCGGACCAGCGGCCTG CTGGGGTCCGGTCGCCGGCGGGGGACCGGGAGGGCAAGAATGGACAACTTCAACCTCGTCTTCGTCCTGATCGGT GCCTTTACCTTCCTCATGGCGATATGGAAGGCCGTCAGGGCCATCAGCACGCGAGTGCTCAACAACGTGAGCGAC AAGGTGCTCGACGTGAGCGAGGATGATGGTGACGAGGCCGAAGACGACGCAGATGAAGAGAATAAAAAGGATCAA TGA |
| Transcript | >Hirsu2|4095 CTGGGCATCTCGTCGGCTTCGTCGCGCCCGTCCTATGTTTCGGACGACCCCGAACTTGGCCGGCTGTTGTCGCCC TGCAAATGCAAGGGCTCGCAGAAGTATGTCCACGAAGGCTGCCTCAACTCGTGGCGGCTGGCGAACCCCATGGCC GAGAGGAACTACTGGCAGTGTCCGACGTGCAAGTTCAACTACAGGCTGGCGCGGCTGCACTGGGCCTCGATGCTG AGCAGCAAGTGGGCTCAGGTGACGGTAACTCTGGCCGTTTTGATAGTGGGCATCTTCATTCTCGGCTTCATCGCG GATCCCATCCTGGATCTGTGGTTTGATCCCGTGGGCACCATTAGCGACACCGTCACAAGCGTGGTTTCGGACGTC GAGGCCATCAGGCCCCCGCCCTTCGAAGAGTCGGTCTCGTGGACAGAGCACTTTGCCAAGGGCTTCTTCTCACTC GGCTTTGTGGGCTTTATCAAATCCGTGGTTGCAATGGGGCCCTGGCAGTGGCTGAACCTTCGGACCAGCGGCCTG CTGGGGTCCGGTCGCCGGCGGGGGACCGGGAGGGCAAGAATGGACAACTTCAACCTCGTCTTCGTCCTGATCGGT GCCTTTACCTTCCTCATGGCGATATGGAAGGCCGTCAGGGCCATCAGCACGCGAGTGCTCAACAACGTGAGCGAC AAGGTGCTCGACGTGAGCGAGGATGATGGTGACGAGGCCGAAGACGACGCAGATGAAGAGAATAAAAAGGATCAA TGA |
| Gene | >Hirsu2|4095 CTGGGCATCTCGTCGGCTTCGTCGCGCCCGTCCTATGTTTCGGACGACCCCGAACTTGGCCGGCTGTTGTCGCCC TGCAAATGCAAGGGCTCGCAGAAGTATGTCCACGAAGGCTGCCTCAACTCGTGGCGGCTGGCGAACCCCATGGCC GAGAGGAACTACTGGCAGTGTCCGACGTGCAAGTTCAACTACAGGCTGGCGCGGCTGCACTGGGCCTCGATGCTG AGCAGCAAGTGGGCTCAGGTGACGGTAACTCTGGCCGTTTTGATAGTGGGCATCTTCATTCTCGGCTTCATCGCG GATCCCATCCTGGATCTGTGGTTTGATCCCGTGGGCACCATTAGCGACACCGTCACAAGCGTGGTTTCGGACGTC GAGGCCATCAGGCCCCCGCCCTTCGAAGAGTCGGTCTCGTGGACAGAGCACTTTGCCAAGGGCTTCTTCTCACTC GGCTTTGTGGGCTTTATCAAATCCGTGGTTGCAATGGGGCCCTGGCAGTGGCTGAACCTTCGGACCAGCGGCCTG CTGGGGTCCGGTCGCCGGCGGGGGACCGGGAGGGCAAGAATGGACAACTTCAACCTCGTCTTCGTCCTGATCGGT GCCTTTACCTTCCTCATGGCGATATGGAAGGCCGTCAGGGCCATCAGCACGCGAGTGCTCAACAACGTGAGCGAC AAGGTGCTCGACGTGAGCGAGGATGATGGTGACGAGGCCGAAGACGACGCAGATGAAGAGAATAAAAAGGATCAA TGA |