Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|4092
Gene name
LocationContig_2118:71..817
Strand-
Gene length (bp)746
Transcript length (bp)636
Coding sequence length (bp)636
Protein length (aa) 212

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PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q06466|TDA6_YEAST Putative vacuolar protein sorting-associated protein TDA6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TDA6 PE=2 SV=1 127 161 2.0E-06

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 35 0.5

Transmembrane Domains

Domain # Start End Length
1 7 29 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|4092
MWRWLRRCAVVLAIFFALCFLASWLPTALSPTKASPEKQARDRLWVDSSPYFVDRQLCRWMSLCGLHHLKSDPAA
LPGPDAGPPPDEWRELRRRSPGPGPGPDPDATQRRRADKRTNTRERRRIVKDIPDYVTKYAPLVHLYSGEQFWPS
DIAEHVRHMNVTLDHELLDRPLPLTLDSLAELNGHRGTVALHSLDDRRGRLGPRPRAHHLV*
Coding >Hirsu2|4092
ATGTGGCGCTGGCTGCGGCGCTGTGCCGTCGTCCTGGCCATCTTCTTCGCCCTGTGCTTCCTCGCCAGCTGGCTG
CCCACCGCCCTCAGTCCCACCAAGGCCAGTCCGGAGAAGCAGGCCCGAGACCGGCTCTGGGTCGACAGCAGCCCC
TACTTCGTCGACCGCCAATTGTGCCGATGGATGAGCCTCTGCGGCCTCCATCACCTCAAGAGCGATCCCGCCGCC
CTCCCCGGCCCTGACGCCGGGCCGCCCCCCGACGAATGGCGCGAGCTGCGCAGGAGGTCCCCCGGTCCCGGCCCC
GGCCCCGACCCCGACGCCACCCAACGCCGCCGCGCCGACAAGAGGACCAACACGCGCGAGAGGCGGAGGATAGTC
AAGGACATCCCCGACTACGTCACCAAGTACGCGCCCCTCGTCCACCTCTACTCGGGCGAGCAGTTCTGGCCGTCG
GACATCGCCGAGCACGTCCGCCACATGAACGTCACCCTCGACCACGAGCTCCTCGACCGCCCGCTGCCCCTGACG
CTCGACAGCCTGGCCGAGCTCAACGGCCACCGCGGCACCGTCGCCCTGCACAGCCTCGACGACCGGCGAGGACGT
CTCGGCCCCCGGCCGCGAGCGCACCACCTGGTTTGA
Transcript >Hirsu2|4092
ATGTGGCGCTGGCTGCGGCGCTGTGCCGTCGTCCTGGCCATCTTCTTCGCCCTGTGCTTCCTCGCCAGCTGGCTG
CCCACCGCCCTCAGTCCCACCAAGGCCAGTCCGGAGAAGCAGGCCCGAGACCGGCTCTGGGTCGACAGCAGCCCC
TACTTCGTCGACCGCCAATTGTGCCGATGGATGAGCCTCTGCGGCCTCCATCACCTCAAGAGCGATCCCGCCGCC
CTCCCCGGCCCTGACGCCGGGCCGCCCCCCGACGAATGGCGCGAGCTGCGCAGGAGGTCCCCCGGTCCCGGCCCC
GGCCCCGACCCCGACGCCACCCAACGCCGCCGCGCCGACAAGAGGACCAACACGCGCGAGAGGCGGAGGATAGTC
AAGGACATCCCCGACTACGTCACCAAGTACGCGCCCCTCGTCCACCTCTACTCGGGCGAGCAGTTCTGGCCGTCG
GACATCGCCGAGCACGTCCGCCACATGAACGTCACCCTCGACCACGAGCTCCTCGACCGCCCGCTGCCCCTGACG
CTCGACAGCCTGGCCGAGCTCAACGGCCACCGCGGCACCGTCGCCCTGCACAGCCTCGACGACCGGCGAGGACGT
CTCGGCCCCCGGCCGCGAGCGCACCACCTGGTTTGA
Gene >Hirsu2|4092
ATGTGGCGCTGGCTGCGGCGCTGTGCCGTCGTCCTGGCCATCTTCTTCGCCCTGTGCTTCCTCGCCAGCTGGCTG
CCCACCGCCCTCAGTCCCACCAAGGCCAGTCCGGAGAAGCAGGCCCGAGACCGGCTCTGGGTCGACAGCAGCCCC
TACTTCGTCGACCGCCAATTGTGCCGATGGATGAGCCTCTGCGGCCTCCATCACCTCAAGAGCGATCCCGCCGCC
CTCCCCGGCCCTGACGCCGGGCCGCCCCCCGACGAATGGCGCGAGCTGCGCAGGAGGTCCCCCGGTCCCGGCCCC
GGCCCCGACCCCGACGCCACCCAACGCCGCCGCGCCGACAAGAGGACCAACACGCGCGAGAGGCGGAGGATAGTC
AAGGACATCCCCGACTACGTCACCAAGTACGCGCCCCTCGTCCACCTCTACTCGGGCGAGCAGTTCTGGCCGTCG
GACATCGCCGAGCACGTCCGCCACATGAACGTCACCCTCGACCACGAGCTCCTCGACCGCCCGCTGCCCCTGACG
CTCGACAGCCTGGCCGAGCTCAACGGCCACCGCGGCACCGTCGCCCTGCACAGCCTCGACGACGTCGAGTCCCGC
CCCGCCTGGCTGCACAGCCGCCCCAACCTGCCCGAGCCCTTCCCGGACGGCGACGGCGACGGCGACGGCGACGAC
CACCAGGACCCCCTGGTCGGCAGCGGCGAGGACGTCTCGGCCCCCGGCCGCGAGCGCACCACCTGGTTTGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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