Protein ID | Hirsu2|409 |
Gene name | |
Location | Contig_108:34391..35304 |
Strand | - |
Gene length (bp) | 913 |
Transcript length (bp) | 795 |
Coding sequence length (bp) | 795 |
Protein length (aa) | 265 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF20238 | DUF6595 | Family of unknown function (DUF6595) | 3.5E-26 | 42 | 173 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane | Signal peptide | 0.1102 | 0.097 | 0.5269 | 0.6424 | 0.2165 | 0.0115 | 0.1168 | 0.3973 | 0.2026 | 0.0187 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 23 | 0.999003 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 204 | 226 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 337 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|409 MPSATKKPAAGLALLLAFAAASAEQGDGSRSAAQASAAGGHQTPPSESVWSGTMGSQEPCGSSAAPGARTRFPLK NGAVAVVARDDYHDSKISISYSDNPERNGDFIPLVETSGMSRPGPGQSCIPIPDAPATAPAGANATLQITYRGDG QPLYACADITYVAPDEFGERVPCLAMTRPADDGRGPARKLEAADDGSTKLGSGAIAGVTIGSLAGLTLVAAVLLF LCRRRRQKSRKPRPGRTPGNARRDRFAADNKYSPSQNSV* |
Coding | >Hirsu2|409 ATGCCGTCCGCCACGAAGAAGCCGGCCGCTGGCCTGGCGTTGCTGCTCGCCTTCGCCGCCGCTTCTGCCGAGCAA GGCGACGGCAGCAGGTCCGCGGCCCAGGCGTCGGCCGCCGGCGGTCATCAGACGCCTCCCAGCGAAAGCGTCTGG TCCGGAACCATGGGCAGCCAGGAGCCCTGCGGCTCGAGTGCGGCGCCGGGCGCCAGGACGCGGTTCCCCCTGAAG AACGGAGCGGTGGCGGTTGTGGCCAGGGACGACTACCACGACAGCAAGATCAGCATCTCCTACTCCGACAACCCG GAGCGCAACGGCGACTTCATCCCGCTGGTCGAGACGTCCGGCATGTCCCGGCCCGGCCCCGGCCAGAGCTGCATC CCGATCCCCGACGCCCCGGCCACGGCCCCGGCCGGCGCCAACGCCACCCTGCAAATCACCTACAGGGGCGACGGC CAGCCGCTGTACGCCTGCGCCGACATCACCTACGTCGCCCCGGACGAGTTCGGGGAGCGCGTCCCGTGCCTCGCC ATGACGCGGCCCGCCGACGACGGCCGCGGACCGGCCCGCAAGCTCGAGGCCGCCGACGACGGCTCCACCAAGCTG GGCAGCGGCGCCATCGCCGGCGTCACCATCGGCTCCCTCGCCGGCCTGACCCTCGTCGCCGCCGTCCTGCTCTTC CTCTGCCGCCGCCGCCGGCAGAAGAGCCGCAAGCCGCGTCCCGGCCGCACGCCCGGCAATGCCCGCCGGGACCGG TTCGCCGCGGACAACAAGTATTCGCCTTCGCAAAATAGCGTGTGA |
Transcript | >Hirsu2|409 ATGCCGTCCGCCACGAAGAAGCCGGCCGCTGGCCTGGCGTTGCTGCTCGCCTTCGCCGCCGCTTCTGCCGAGCAA GGCGACGGCAGCAGGTCCGCGGCCCAGGCGTCGGCCGCCGGCGGTCATCAGACGCCTCCCAGCGAAAGCGTCTGG TCCGGAACCATGGGCAGCCAGGAGCCCTGCGGCTCGAGTGCGGCGCCGGGCGCCAGGACGCGGTTCCCCCTGAAG AACGGAGCGGTGGCGGTTGTGGCCAGGGACGACTACCACGACAGCAAGATCAGCATCTCCTACTCCGACAACCCG GAGCGCAACGGCGACTTCATCCCGCTGGTCGAGACGTCCGGCATGTCCCGGCCCGGCCCCGGCCAGAGCTGCATC CCGATCCCCGACGCCCCGGCCACGGCCCCGGCCGGCGCCAACGCCACCCTGCAAATCACCTACAGGGGCGACGGC CAGCCGCTGTACGCCTGCGCCGACATCACCTACGTCGCCCCGGACGAGTTCGGGGAGCGCGTCCCGTGCCTCGCC ATGACGCGGCCCGCCGACGACGGCCGCGGACCGGCCCGCAAGCTCGAGGCCGCCGACGACGGCTCCACCAAGCTG GGCAGCGGCGCCATCGCCGGCGTCACCATCGGCTCCCTCGCCGGCCTGACCCTCGTCGCCGCCGTCCTGCTCTTC CTCTGCCGCCGCCGCCGGCAGAAGAGCCGCAAGCCGCGTCCCGGCCGCACGCCCGGCAATGCCCGCCGGGACCGG TTCGCCGCGGACAACAAGTATTCGCCTTCGCAAAATAGCGTGTGA |
Gene | >Hirsu2|409 ATGCCGTCCGCCACGAAGAAGCCGGCCGCTGGCCTGGCGTTGCTGCTCGCCTTCGCCGCCGCTTCTGCCGAGCAA GGCGACGGCAGCAGGTCCGCGGCCCAGGCGTCGGCCGCCGGCGGTCATCAGACGCCTCCCAGCGAAAGCGTCTGG TCCGGAACCATGGGCAGCCAGGAGCCCTGCGGCTCGAGTGCGGCGCCGGGCGCCAGGACGCGGTTCCCCCTGAGT GCGTTCATCATCACCGTCCTCGTCTCCCCTTTGACGCCGTTTCGGCTGACCATGTCGGGACAGAGAACGGAGCGG TGGCGGTTGTGGCCAGGGACGACTACCACGACAGCAAGATCAGCATCTCCTACTCCGACAGTACGTCGTCGTCGC TCGTCCGCAGCCCGTTCACTGATTGACCCGCGCGGCAGACCCGGAGCGCAACGGCGACTTCATCCCGCTGGTCGA GACGTCCGGCATGTCCCGGCCCGGCCCCGGCCAGAGCTGCATCCCGATCCCCGACGCCCCGGCCACGGCCCCGGC CGGCGCCAACGCCACCCTGCAAATCACCTACAGGGGCGACGGCCAGCCGCTGTACGCCTGCGCCGACATCACCTA CGTCGCCCCGGACGAGTTCGGGGAGCGCGTCCCGTGCCTCGCCATGACGCGGCCCGCCGACGACGGCCGCGGACC GGCCCGCAAGCTCGAGGCCGCCGACGACGGCTCCACCAAGCTGGGCAGCGGCGCCATCGCCGGCGTCACCATCGG CTCCCTCGCCGGCCTGACCCTCGTCGCCGCCGTCCTGCTCTTCCTCTGCCGCCGCCGCCGGCAGAAGAGCCGCAA GCCGCGTCCCGGCCGCACGCCCGGCAATGCCCGCCGGGACCGGTTCGCCGCGGACAACAAGTATTCGCCTTCGCA AAATAGCGTGTGA |