© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|4073 |
| Gene name | |
| Location | Contig_211:3767..4322 |
| Strand | - |
| Gene length (bp) | 555 |
| Transcript length (bp) | 555 |
| Coding sequence length (bp) | 555 |
| Protein length (aa) | 185 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00909 | Ammonium_transp | Ammonium Transporter Family | 2.6E-24 | 5 | 116 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P53390|MEP3_YEAST | Ammonium transporter MEP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MEP3 PE=1 SV=1 | 5 | 128 | 1.0E-36 |
| sp|P40260|MEP1_YEAST | Ammonium transporter MEP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MEP1 PE=1 SV=1 | 5 | 128 | 1.0E-33 |
| sp|Q9US00|AMT2_SCHPO | Ammonium transporter 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=amt2 PE=3 SV=1 | 5 | 137 | 8.0E-27 |
| sp|Q9C0V1|AMT1_SCHPO | Ammonium transporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=amt1 PE=3 SV=1 | 5 | 118 | 1.0E-26 |
| sp|P41948|MEP2_YEAST | Ammonium transporter MEP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MEP2 PE=1 SV=1 | 5 | 168 | 1.0E-16 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P53390|MEP3_YEAST | Ammonium transporter MEP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MEP3 PE=1 SV=1 | 5 | 128 | 1.0E-36 |
| sp|P40260|MEP1_YEAST | Ammonium transporter MEP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MEP1 PE=1 SV=1 | 5 | 128 | 1.0E-33 |
| sp|Q9US00|AMT2_SCHPO | Ammonium transporter 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=amt2 PE=3 SV=1 | 5 | 137 | 8.0E-27 |
| sp|Q9C0V1|AMT1_SCHPO | Ammonium transporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=amt1 PE=3 SV=1 | 5 | 118 | 1.0E-26 |
| sp|P41948|MEP2_YEAST | Ammonium transporter MEP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MEP2 PE=1 SV=1 | 5 | 168 | 1.0E-16 |
| sp|Q9P7F3|AMT3_SCHPO | Ammonium transporter 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=amt3 PE=3 SV=1 | 9 | 107 | 1.0E-14 |
| sp|Q07429|NRGA_BACSU | Ammonium transporter NrgA OS=Bacillus subtilis (strain 168) GN=nrgA PE=2 SV=1 | 12 | 117 | 6.0E-12 |
| sp|P69681|AMTB_ECOLI | Ammonia channel OS=Escherichia coli (strain K12) GN=amtB PE=1 SV=1 | 4 | 117 | 8.0E-10 |
| sp|P69680|AMTB_ECO57 | Ammonia channel OS=Escherichia coli O157:H7 GN=amtB PE=1 SV=1 | 4 | 117 | 8.0E-10 |
| sp|P54146|AMT_CORGL | Ammonia channel OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=amt PE=2 SV=1 | 10 | 116 | 2.0E-09 |
| sp|P54144|AMT11_ARATH | Ammonium transporter 1 member 1 OS=Arabidopsis thaliana GN=AMT1-1 PE=1 SV=1 | 9 | 157 | 3.0E-08 |
| sp|Q9BLG4|AMT1_DICDI | Ammonium transporter 1 OS=Dictyostelium discoideum GN=amtA PE=1 SV=1 | 4 | 124 | 4.0E-08 |
| sp|P54145|AMT1_CAEEL | Putative ammonium transporter 1 OS=Caenorhabditis elegans GN=amt-1 PE=3 SV=1 | 9 | 116 | 2.0E-07 |
| sp|Q8S230|AMT22_ORYSJ | Ammonium transporter 2 member 2 OS=Oryza sativa subsp. japonica GN=AMT2-2 PE=2 SV=2 | 7 | 116 | 2.0E-06 |
| sp|Q9SQH9|AMT13_ARATH | Ammonium transporter 1 member 3 OS=Arabidopsis thaliana GN=AMT1-3 PE=2 SV=2 | 8 | 118 | 3.0E-06 |
| sp|Q9LK16|AMT15_ARATH | Putative ammonium transporter 1 member 5 OS=Arabidopsis thaliana GN=AMT1-5 PE=3 SV=1 | 8 | 118 | 3.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0072488 | ammonium transmembrane transport | Yes |
| GO:0008519 | ammonium transmembrane transporter activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0006811 | ion transport | No |
| GO:0051179 | localization | No |
| GO:0051234 | establishment of localization | No |
| GO:0008150 | biological_process | No |
| GO:0071705 | nitrogen compound transport | No |
| GO:0005216 | ion channel activity | No |
| GO:0015267 | channel activity | No |
| GO:0098662 | inorganic cation transmembrane transport | No |
| GO:0009987 | cellular process | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0022803 | passive transmembrane transporter activity | No |
| GO:0098660 | inorganic ion transmembrane transport | No |
| GO:0005215 | transporter activity | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0006812 | cation transport | No |
| GO:0098655 | cation transmembrane transport | No |
| GO:0006810 | transport | No |
| GO:0003674 | molecular_function | No |
| GO:0034220 | ion transmembrane transport | No |
| GO:0005575 | cellular_component | No |
| GO:0055085 | transmembrane transport | No |
| GO:0005261 | cation channel activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 39 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 21 | 43 | 22 |
| 2 | 61 | 83 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4073 MSPLVKYLIRIDDSLDVFAEHGIGGIVGLIFNAFFATGRTIGLDGVNTGASGGFLDGKYIVLGWQIAAIVAASAY AFVVSAIIAKLIDLVPGLKLRASEEAELLGMDDDQHGEFSYDYVEVRRDFLAWSPHRGEPAGDGVTIEPQLGIPA HANMAPSSEKSSRVSSDHGAEGLTTAAATTTTTT* |
| Coding | >Hirsu2|4073 ATGTCTCCTTTAGTCAAGTACCTGATACGCATTGACGACTCGCTCGACGTCTTTGCCGAGCACGGCATTGGCGGC ATCGTCGGCCTCATCTTCAACGCCTTCTTCGCCACCGGCAGGACCATCGGTCTCGACGGCGTCAACACGGGCGCC TCGGGCGGCTTTCTCGATGGCAAGTACATCGTCCTCGGCTGGCAGATCGCCGCCATCGTCGCCGCCAGCGCCTAC GCATTCGTCGTGTCCGCCATCATCGCCAAGCTCATCGACCTCGTGCCCGGCCTCAAGCTGCGGGCTTCGGAGGAG GCTGAGTTGCTCGGAATGGATGACGATCAGCACGGCGAGTTCTCGTACGACTACGTCGAAGTCCGCCGTGACTTC CTGGCCTGGAGCCCGCATCGCGGCGAGCCCGCCGGCGACGGCGTGACCATTGAGCCCCAACTCGGTATCCCGGCG CACGCCAACATGGCTCCGTCCTCGGAGAAGAGTTCGCGGGTCTCGTCCGATCATGGCGCAGAGGGCCTGACGACG GCGGCCGCGACGACGACGACGACGACGTGA |
| Transcript | >Hirsu2|4073 ATGTCTCCTTTAGTCAAGTACCTGATACGCATTGACGACTCGCTCGACGTCTTTGCCGAGCACGGCATTGGCGGC ATCGTCGGCCTCATCTTCAACGCCTTCTTCGCCACCGGCAGGACCATCGGTCTCGACGGCGTCAACACGGGCGCC TCGGGCGGCTTTCTCGATGGCAAGTACATCGTCCTCGGCTGGCAGATCGCCGCCATCGTCGCCGCCAGCGCCTAC GCATTCGTCGTGTCCGCCATCATCGCCAAGCTCATCGACCTCGTGCCCGGCCTCAAGCTGCGGGCTTCGGAGGAG GCTGAGTTGCTCGGAATGGATGACGATCAGCACGGCGAGTTCTCGTACGACTACGTCGAAGTCCGCCGTGACTTC CTGGCCTGGAGCCCGCATCGCGGCGAGCCCGCCGGCGACGGCGTGACCATTGAGCCCCAACTCGGTATCCCGGCG CACGCCAACATGGCTCCGTCCTCGGAGAAGAGTTCGCGGGTCTCGTCCGATCATGGCGCAGAGGGCCTGACGACG GCGGCCGCGACGACGACGACGACGACGTGA |
| Gene | >Hirsu2|4073 ATGTCTCCTTTAGTCAAGTACCTGATACGCATTGACGACTCGCTCGACGTCTTTGCCGAGCACGGCATTGGCGGC ATCGTCGGCCTCATCTTCAACGCCTTCTTCGCCACCGGCAGGACCATCGGTCTCGACGGCGTCAACACGGGCGCC TCGGGCGGCTTTCTCGATGGCAAGTACATCGTCCTCGGCTGGCAGATCGCCGCCATCGTCGCCGCCAGCGCCTAC GCATTCGTCGTGTCCGCCATCATCGCCAAGCTCATCGACCTCGTGCCCGGCCTCAAGCTGCGGGCTTCGGAGGAG GCTGAGTTGCTCGGAATGGATGACGATCAGCACGGCGAGTTCTCGTACGACTACGTCGAAGTCCGCCGTGACTTC CTGGCCTGGAGCCCGCATCGCGGCGAGCCCGCCGGCGACGGCGTGACCATTGAGCCCCAACTCGGTATCCCGGCG CACGCCAACATGGCTCCGTCCTCGGAGAAGAGTTCGCGGGTCTCGTCCGATCATGGCGCAGAGGGCCTGACGACG GCGGCCGCGACGACGACGACGACGACGTGA |