© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|4034 |
| Gene name | |
| Location | Contig_21:27025..27739 |
| Strand | - |
| Gene length (bp) | 714 |
| Transcript length (bp) | 714 |
| Coding sequence length (bp) | 714 |
| Protein length (aa) | 238 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1029 | 0.0854 | 0.9231 | 0.0998 | 0.0912 | 0.0128 | 0.0453 | 0.0882 | 0.0581 | 0.0025 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 18 | 0.999769 |
| CAZyme category | E-value | Start | End |
|---|---|---|---|
| AA11 | 4.7E-64 | 19 | 226 |
| Orthofinder run ID | 4 |
| Orthogroup | 2634 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4034 MKTVAAIVVGLVASLSQAHMEMKSPPPLRSGYNHFTRDQDWDMTSPLSSNGHDFPCKGSLRLLGTPQGQAVADWV AGQAYSVTITGNAPHSGGSCQVSLSTDRGRSFKVVHSYIGNCPIRGDSSYRFTLPADTPAGEALVAWTWFNNVGN REMYMNCAVVNVKQGGAGNGRWNSGNRNSGASGASSASFSSRPAMFEANIGNGCYTTEGYDVLFPNPGEEVDMRS RHTHPPVGRCPK* |
| Coding | >Hirsu2|4034 ATGAAGACCGTCGCCGCCATCGTCGTCGGCCTCGTCGCCTCGCTGTCGCAGGCGCACATGGAGATGAAGAGCCCG CCGCCGCTGCGGTCGGGCTACAACCACTTCACGCGCGACCAGGACTGGGACATGACGAGCCCGCTGTCGTCCAAC GGCCACGACTTCCCCTGCAAGGGCTCGCTGCGCCTGCTGGGCACGCCGCAGGGCCAGGCCGTGGCCGACTGGGTG GCGGGCCAGGCGTACAGCGTCACCATCACCGGCAACGCCCCCCACAGCGGCGGCTCGTGCCAGGTGTCGCTGTCG ACGGACCGCGGCCGCTCGTTCAAGGTGGTGCACTCGTACATCGGCAACTGCCCCATCAGGGGCGACTCGAGCTAC CGCTTCACGCTGCCGGCCGACACGCCCGCCGGCGAGGCCCTCGTCGCCTGGACCTGGTTCAACAACGTCGGCAAC CGCGAGATGTACATGAACTGCGCCGTCGTCAACGTCAAGCAGGGCGGCGCCGGCAACGGCCGCTGGAACAGCGGC AACCGCAACAGCGGCGCCTCGGGCGCCAGTTCGGCCTCGTTCAGCAGCCGGCCCGCCATGTTCGAGGCCAACATC GGCAACGGCTGCTACACCACCGAGGGCTACGACGTCCTCTTCCCCAACCCGGGCGAGGAGGTCGACATGCGCTCC CGCCACACCCACCCCCCGGTCGGCCGCTGCCCTAAATAG |
| Transcript | >Hirsu2|4034 ATGAAGACCGTCGCCGCCATCGTCGTCGGCCTCGTCGCCTCGCTGTCGCAGGCGCACATGGAGATGAAGAGCCCG CCGCCGCTGCGGTCGGGCTACAACCACTTCACGCGCGACCAGGACTGGGACATGACGAGCCCGCTGTCGTCCAAC GGCCACGACTTCCCCTGCAAGGGCTCGCTGCGCCTGCTGGGCACGCCGCAGGGCCAGGCCGTGGCCGACTGGGTG GCGGGCCAGGCGTACAGCGTCACCATCACCGGCAACGCCCCCCACAGCGGCGGCTCGTGCCAGGTGTCGCTGTCG ACGGACCGCGGCCGCTCGTTCAAGGTGGTGCACTCGTACATCGGCAACTGCCCCATCAGGGGCGACTCGAGCTAC CGCTTCACGCTGCCGGCCGACACGCCCGCCGGCGAGGCCCTCGTCGCCTGGACCTGGTTCAACAACGTCGGCAAC CGCGAGATGTACATGAACTGCGCCGTCGTCAACGTCAAGCAGGGCGGCGCCGGCAACGGCCGCTGGAACAGCGGC AACCGCAACAGCGGCGCCTCGGGCGCCAGTTCGGCCTCGTTCAGCAGCCGGCCCGCCATGTTCGAGGCCAACATC GGCAACGGCTGCTACACCACCGAGGGCTACGACGTCCTCTTCCCCAACCCGGGCGAGGAGGTCGACATGCGCTCC CGCCACACCCACCCCCCGGTCGGCCGCTGCCCTAAATAG |
| Gene | >Hirsu2|4034 ATGAAGACCGTCGCCGCCATCGTCGTCGGCCTCGTCGCCTCGCTGTCGCAGGCGCACATGGAGATGAAGAGCCCG CCGCCGCTGCGGTCGGGCTACAACCACTTCACGCGCGACCAGGACTGGGACATGACGAGCCCGCTGTCGTCCAAC GGCCACGACTTCCCCTGCAAGGGCTCGCTGCGCCTGCTGGGCACGCCGCAGGGCCAGGCCGTGGCCGACTGGGTG GCGGGCCAGGCGTACAGCGTCACCATCACCGGCAACGCCCCCCACAGCGGCGGCTCGTGCCAGGTGTCGCTGTCG ACGGACCGCGGCCGCTCGTTCAAGGTGGTGCACTCGTACATCGGCAACTGCCCCATCAGGGGCGACTCGAGCTAC CGCTTCACGCTGCCGGCCGACACGCCCGCCGGCGAGGCCCTCGTCGCCTGGACCTGGTTCAACAACGTCGGCAAC CGCGAGATGTACATGAACTGCGCCGTCGTCAACGTCAAGCAGGGCGGCGCCGGCAACGGCCGCTGGAACAGCGGC AACCGCAACAGCGGCGCCTCGGGCGCCAGTTCGGCCTCGTTCAGCAGCCGGCCCGCCATGTTCGAGGCCAACATC GGCAACGGCTGCTACACCACCGAGGGCTACGACGTCCTCTTCCCCAACCCGGGCGAGGAGGTCGACATGCGCTCC CGCCACACCCACCCCCCGGTCGGCCGCTGCCCTAAATAG |