© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|4032 |
| Gene name | |
| Location | Contig_21:22363..23184 |
| Strand | + |
| Gene length (bp) | 821 |
| Transcript length (bp) | 657 |
| Coding sequence length (bp) | 657 |
| Protein length (aa) | 219 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.1536 | 0.2038 | 0.0453 | 0.0517 | 0.116 | 0.0043 | 0.9041 | 0.3303 | 0.2998 | 0.0312 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 17 | 0.999688 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 178 | 200 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 2633 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4032 MGGPLLLLLLLLGAASGAVANVEKVIFTGPAAGAGLVLPDRLGALTPAAPVLRTNLSRAADGPGAEAWLLLGDLD EGRRYELRVCWAAIEPTSFSLQLHDPSSIAATPALARLLAAHALPGPPARRRDATAPARQLLLRIRATADYFADD ARLMARPPPVLVDLVLDPFLAGLVPRSLAPTLAYLALVALVAWPLARWLVAGLRSAAGSAPGRAEKRD* |
| Coding | >Hirsu2|4032 ATGGGCGGCCCGCTCCTTCTCCTCCTGCTCCTCCTCGGAGCCGCGTCCGGCGCCGTCGCCAACGTCGAAAAGGTC ATCTTCACCGGCCCGGCCGCCGGGGCCGGCCTCGTCCTGCCCGACCGCCTCGGCGCCCTGACGCCCGCGGCTCCC GTCCTGAGGACCAACCTCAGCCGCGCGGCTGACGGCCCCGGCGCCGAGGCCTGGCTGCTCCTCGGCGACCTCGAC GAAGGCCGGCGGTACGAGCTGCGCGTGTGCTGGGCTGCCATTGAACCGACCAGCTTCTCGCTACAGCTGCACGAC CCGTCCTCCATCGCTGCCACGCCCGCGCTAGCCCGCCTCCTCGCCGCCCACGCCCTACCCGGCCCCCCCGCCCGG CGCCGCGACGCCACCGCCCCCGCCCGGCAGCTGCTCCTGCGCATCCGCGCCACGGCCGACTACTTCGCCGACGAC GCGCGCCTCATGGCCCGCCCGCCGCCCGTGCTCGTCGACCTCGTCCTCGACCCGTTCTTGGCCGGCCTCGTACCG CGCTCGCTCGCCCCGACGCTCGCCTACCTCGCCCTCGTCGCCCTCGTCGCCTGGCCCCTGGCCCGCTGGCTCGTC GCCGGTCTGCGGTCCGCGGCCGGCTCCGCCCCGGGACGGGCCGAAAAGCGTGACTGA |
| Transcript | >Hirsu2|4032 ATGGGCGGCCCGCTCCTTCTCCTCCTGCTCCTCCTCGGAGCCGCGTCCGGCGCCGTCGCCAACGTCGAAAAGGTC ATCTTCACCGGCCCGGCCGCCGGGGCCGGCCTCGTCCTGCCCGACCGCCTCGGCGCCCTGACGCCCGCGGCTCCC GTCCTGAGGACCAACCTCAGCCGCGCGGCTGACGGCCCCGGCGCCGAGGCCTGGCTGCTCCTCGGCGACCTCGAC GAAGGCCGGCGGTACGAGCTGCGCGTGTGCTGGGCTGCCATTGAACCGACCAGCTTCTCGCTACAGCTGCACGAC CCGTCCTCCATCGCTGCCACGCCCGCGCTAGCCCGCCTCCTCGCCGCCCACGCCCTACCCGGCCCCCCCGCCCGG CGCCGCGACGCCACCGCCCCCGCCCGGCAGCTGCTCCTGCGCATCCGCGCCACGGCCGACTACTTCGCCGACGAC GCGCGCCTCATGGCCCGCCCGCCGCCCGTGCTCGTCGACCTCGTCCTCGACCCGTTCTTGGCCGGCCTCGTACCG CGCTCGCTCGCCCCGACGCTCGCCTACCTCGCCCTCGTCGCCCTCGTCGCCTGGCCCCTGGCCCGCTGGCTCGTC GCCGGTCTGCGGTCCGCGGCCGGCTCCGCCCCGGGACGGGCCGAAAAGCGTGACTGA |
| Gene | >Hirsu2|4032 ATGGGCGGCCCGCTCCTTCTCCTCCTGCTCCTCCTCGGAGCCGCGTCCGGCGCCGTCGCCAACGTCGAAAAGGTC ATCTTCACCGGCCCGGCCGCCGGGGCCGGCCTCGTCCTGCCCGACCGCCTCGGCGCCCTGACGCCCGCGGCTCCC GTCCTGAGGACCAACCTCAGCCGCGCGGCTGACGGCCCCGGCGCCGAGGCCTGGCTGCTCCTCGGCGACCTCGAC GAAGGCCGGCGGTACGAGCTGCGCGTGTGCTGGGCTGCCATTGTGAGTCGCGTCCGTGCCGTGATGAAGCCAGAG AGGGAGCGCGTTCTGGGCCCCCGAAAGAACAGGCCAGAGAGATGAGATATCCGTGTCCCTGAAAAGGCCACGATG ATAAGATGTCTGTGGAATGCCAAGCCGTCCCCCCAGCTCACCACCACCGCAACCAGGAACCGACCAGCTTCTCGC TACAGCTGCACGACCCGTCCTCCATCGCTGCCACGCCCGCGCTAGCCCGCCTCCTCGCCGCCCACGCCCTACCCG GCCCCCCCGCCCGGCGCCGCGACGCCACCGCCCCCGCCCGGCAGCTGCTCCTGCGCATCCGCGCCACGGCCGACT ACTTCGCCGACGACGCGCGCCTCATGGCCCGCCCGCCGCCCGTGCTCGTCGACCTCGTCCTCGACCCGTTCTTGG CCGGCCTCGTACCGCGCTCGCTCGCCCCGACGCTCGCCTACCTCGCCCTCGTCGCCCTCGTCGCCTGGCCCCTGG CCCGCTGGCTCGTCGCCGGTCTGCGGTCCGCGGCCGGCTCCGCCCCGGGACGGGCCGAAAAGCGTGACTGA |