Protein ID | Hirsu2|4032 |
Gene name | |
Location | Contig_21:22363..23184 |
Strand | + |
Gene length (bp) | 821 |
Transcript length (bp) | 657 |
Coding sequence length (bp) | 657 |
Protein length (aa) | 219 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.1536 | 0.2038 | 0.0453 | 0.0517 | 0.116 | 0.0043 | 0.9041 | 0.3303 | 0.2998 | 0.0312 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 17 | 0.999688 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 178 | 200 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 2633 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|4032 MGGPLLLLLLLLGAASGAVANVEKVIFTGPAAGAGLVLPDRLGALTPAAPVLRTNLSRAADGPGAEAWLLLGDLD EGRRYELRVCWAAIEPTSFSLQLHDPSSIAATPALARLLAAHALPGPPARRRDATAPARQLLLRIRATADYFADD ARLMARPPPVLVDLVLDPFLAGLVPRSLAPTLAYLALVALVAWPLARWLVAGLRSAAGSAPGRAEKRD* |
Coding | >Hirsu2|4032 ATGGGCGGCCCGCTCCTTCTCCTCCTGCTCCTCCTCGGAGCCGCGTCCGGCGCCGTCGCCAACGTCGAAAAGGTC ATCTTCACCGGCCCGGCCGCCGGGGCCGGCCTCGTCCTGCCCGACCGCCTCGGCGCCCTGACGCCCGCGGCTCCC GTCCTGAGGACCAACCTCAGCCGCGCGGCTGACGGCCCCGGCGCCGAGGCCTGGCTGCTCCTCGGCGACCTCGAC GAAGGCCGGCGGTACGAGCTGCGCGTGTGCTGGGCTGCCATTGAACCGACCAGCTTCTCGCTACAGCTGCACGAC CCGTCCTCCATCGCTGCCACGCCCGCGCTAGCCCGCCTCCTCGCCGCCCACGCCCTACCCGGCCCCCCCGCCCGG CGCCGCGACGCCACCGCCCCCGCCCGGCAGCTGCTCCTGCGCATCCGCGCCACGGCCGACTACTTCGCCGACGAC GCGCGCCTCATGGCCCGCCCGCCGCCCGTGCTCGTCGACCTCGTCCTCGACCCGTTCTTGGCCGGCCTCGTACCG CGCTCGCTCGCCCCGACGCTCGCCTACCTCGCCCTCGTCGCCCTCGTCGCCTGGCCCCTGGCCCGCTGGCTCGTC GCCGGTCTGCGGTCCGCGGCCGGCTCCGCCCCGGGACGGGCCGAAAAGCGTGACTGA |
Transcript | >Hirsu2|4032 ATGGGCGGCCCGCTCCTTCTCCTCCTGCTCCTCCTCGGAGCCGCGTCCGGCGCCGTCGCCAACGTCGAAAAGGTC ATCTTCACCGGCCCGGCCGCCGGGGCCGGCCTCGTCCTGCCCGACCGCCTCGGCGCCCTGACGCCCGCGGCTCCC GTCCTGAGGACCAACCTCAGCCGCGCGGCTGACGGCCCCGGCGCCGAGGCCTGGCTGCTCCTCGGCGACCTCGAC GAAGGCCGGCGGTACGAGCTGCGCGTGTGCTGGGCTGCCATTGAACCGACCAGCTTCTCGCTACAGCTGCACGAC CCGTCCTCCATCGCTGCCACGCCCGCGCTAGCCCGCCTCCTCGCCGCCCACGCCCTACCCGGCCCCCCCGCCCGG CGCCGCGACGCCACCGCCCCCGCCCGGCAGCTGCTCCTGCGCATCCGCGCCACGGCCGACTACTTCGCCGACGAC GCGCGCCTCATGGCCCGCCCGCCGCCCGTGCTCGTCGACCTCGTCCTCGACCCGTTCTTGGCCGGCCTCGTACCG CGCTCGCTCGCCCCGACGCTCGCCTACCTCGCCCTCGTCGCCCTCGTCGCCTGGCCCCTGGCCCGCTGGCTCGTC GCCGGTCTGCGGTCCGCGGCCGGCTCCGCCCCGGGACGGGCCGAAAAGCGTGACTGA |
Gene | >Hirsu2|4032 ATGGGCGGCCCGCTCCTTCTCCTCCTGCTCCTCCTCGGAGCCGCGTCCGGCGCCGTCGCCAACGTCGAAAAGGTC ATCTTCACCGGCCCGGCCGCCGGGGCCGGCCTCGTCCTGCCCGACCGCCTCGGCGCCCTGACGCCCGCGGCTCCC GTCCTGAGGACCAACCTCAGCCGCGCGGCTGACGGCCCCGGCGCCGAGGCCTGGCTGCTCCTCGGCGACCTCGAC GAAGGCCGGCGGTACGAGCTGCGCGTGTGCTGGGCTGCCATTGTGAGTCGCGTCCGTGCCGTGATGAAGCCAGAG AGGGAGCGCGTTCTGGGCCCCCGAAAGAACAGGCCAGAGAGATGAGATATCCGTGTCCCTGAAAAGGCCACGATG ATAAGATGTCTGTGGAATGCCAAGCCGTCCCCCCAGCTCACCACCACCGCAACCAGGAACCGACCAGCTTCTCGC TACAGCTGCACGACCCGTCCTCCATCGCTGCCACGCCCGCGCTAGCCCGCCTCCTCGCCGCCCACGCCCTACCCG GCCCCCCCGCCCGGCGCCGCGACGCCACCGCCCCCGCCCGGCAGCTGCTCCTGCGCATCCGCGCCACGGCCGACT ACTTCGCCGACGACGCGCGCCTCATGGCCCGCCCGCCGCCCGTGCTCGTCGACCTCGTCCTCGACCCGTTCTTGG CCGGCCTCGTACCGCGCTCGCTCGCCCCGACGCTCGCCTACCTCGCCCTCGTCGCCCTCGTCGCCTGGCCCCTGG CCCGCTGGCTCGTCGCCGGTCTGCGGTCCGCGGCCGGCTCCGCCCCGGGACGGGCCGAAAAGCGTGACTGA |