© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|4030 |
| Gene name | |
| Location | Contig_21:17367..18550 |
| Strand | - |
| Gene length (bp) | 1183 |
| Transcript length (bp) | 1116 |
| Coding sequence length (bp) | 1116 |
| Protein length (aa) | 372 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00682 | HMGL-like | HMGL-like | 1.1E-42 | 37 | 339 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9I2A0|LIUE_PSEAE | 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=liuE PE=1 SV=1 | 36 | 351 | 2.0E-96 |
| sp|P97519|HMGCL_RAT | Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Rattus norvegicus GN=Hmgcl PE=2 SV=1 | 13 | 356 | 8.0E-91 |
| sp|P13703|HMGCL_PSEMV | Hydroxymethylglutaryl-CoA lyase OS=Pseudomonas mevalonii GN=mvaB PE=3 SV=1 | 38 | 363 | 1.0E-89 |
| sp|P38060|HMGCL_MOUSE | Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Mus musculus GN=Hmgcl PE=1 SV=2 | 21 | 356 | 1.0E-89 |
| sp|Q8HXZ6|HMGCL_MACFA | Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Macaca fascicularis GN=HMGCL PE=2 SV=1 | 21 | 356 | 1.0E-89 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9I2A0|LIUE_PSEAE | 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=liuE PE=1 SV=1 | 36 | 351 | 2.0E-96 |
| sp|P97519|HMGCL_RAT | Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Rattus norvegicus GN=Hmgcl PE=2 SV=1 | 13 | 356 | 8.0E-91 |
| sp|P13703|HMGCL_PSEMV | Hydroxymethylglutaryl-CoA lyase OS=Pseudomonas mevalonii GN=mvaB PE=3 SV=1 | 38 | 363 | 1.0E-89 |
| sp|P38060|HMGCL_MOUSE | Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Mus musculus GN=Hmgcl PE=1 SV=2 | 21 | 356 | 1.0E-89 |
| sp|Q8HXZ6|HMGCL_MACFA | Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Macaca fascicularis GN=HMGCL PE=2 SV=1 | 21 | 356 | 1.0E-89 |
| sp|Q8JZS7|HMGC2_MOUSE | 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Mus musculus GN=Hmgcll1 PE=2 SV=1 | 6 | 361 | 7.0E-89 |
| sp|Q5R9E1|HMGCL_PONAB | Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Pongo abelii GN=HMGCL PE=2 SV=1 | 1 | 356 | 8.0E-89 |
| sp|Q29448|HMGCL_BOVIN | Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Bos taurus GN=HMGCL PE=2 SV=2 | 21 | 356 | 8.0E-89 |
| sp|D4A5C3|HMGC2_RAT | 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Rattus norvegicus GN=Hmgcll1 PE=1 SV=1 | 6 | 361 | 6.0E-88 |
| sp|P35915|HMGCL_CHICK | Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Gallus gallus GN=HMGCL PE=1 SV=1 | 33 | 356 | 2.0E-87 |
| sp|P35914|HMGCL_HUMAN | Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Homo sapiens GN=HMGCL PE=1 SV=2 | 1 | 356 | 5.0E-87 |
| sp|A8WG57|HMGC2_DANRE | 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Danio rerio GN=hmgcll1 PE=2 SV=1 | 14 | 356 | 1.0E-83 |
| sp|Q8TB92|HMGC2_HUMAN | 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Homo sapiens GN=HMGCLL1 PE=1 SV=3 | 38 | 360 | 4.0E-83 |
| sp|O81027|HMGCL_ARATH | Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Arabidopsis thaliana GN=HMGCL PE=1 SV=2 | 38 | 357 | 3.0E-82 |
| sp|O34873|HMGCL_BACSU | Hydroxymethylglutaryl-CoA lyase YngG OS=Bacillus subtilis (strain 168) GN=yngG PE=1 SV=1 | 33 | 347 | 3.0E-71 |
| sp|A9WGE2|CCL_CHLAA | (R)-citramalyl-CoA lyase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=ccl PE=1 SV=1 | 38 | 356 | 1.0E-58 |
| sp|C1AVG2|HOA4_RHOOB | 4-hydroxy-2-oxovalerate aldolase 4 OS=Rhodococcus opacus (strain B4) GN=ROP_54050 PE=3 SV=1 | 57 | 347 | 9.0E-09 |
| sp|B0TCR1|LEU1_HELMI | 2-isopropylmalate synthase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=leuA PE=3 SV=1 | 35 | 355 | 1.0E-08 |
| sp|Q8ZW35|LEU1_PYRAE | Probable 2-isopropylmalate synthase OS=Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=leuA PE=3 SV=1 | 147 | 346 | 1.0E-08 |
| sp|C1B8I0|HOA2_RHOOB | 4-hydroxy-2-oxovalerate aldolase 2 OS=Rhodococcus opacus (strain B4) GN=ROP_37360 PE=3 SV=1 | 57 | 347 | 3.0E-08 |
| sp|D3DJ41|2OCL_HYDTT | 2-oxoglutarate carboxylase large subunit OS=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) GN=cfiA PE=1 SV=1 | 167 | 354 | 5.0E-08 |
| sp|Q0S9W9|HOA2_RHOJR | 4-hydroxy-2-oxovalerate aldolase 2 OS=Rhodococcus jostii (strain RHA1) GN=RHA1_ro03867 PE=3 SV=1 | 187 | 347 | 8.0E-08 |
| sp|A8AB61|LEU1_IGNH4 | Probable 2-isopropylmalate synthase OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=leuA PE=3 SV=1 | 38 | 330 | 1.0E-07 |
| sp|Q9RUA9|LEU1_DEIRA | 2-isopropylmalate synthase OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=leuA PE=3 SV=1 | 25 | 329 | 2.0E-07 |
| sp|A3DF94|LEU1_CLOTH | 2-isopropylmalate synthase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) GN=leuA PE=3 SV=1 | 37 | 358 | 2.0E-07 |
| sp|B1I1Y1|LEU1_DESAP | 2-isopropylmalate synthase OS=Desulforudis audaxviator (strain MP104C) GN=leuA PE=3 SV=1 | 35 | 355 | 3.0E-07 |
| sp|O59390|HOSA_PYRHO | Putative homocitrate synthase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH1727 PE=3 SV=1 | 157 | 299 | 9.0E-07 |
| sp|Q764S0|HOA_BACPJ | 4-hydroxy-2-oxovalerate aldolase OS=Bacillus sp. (strain JF8) GN=nahM PE=3 SV=2 | 190 | 342 | 3.0E-06 |
| sp|Q9JZG1|LEU1_NEIMB | 2-isopropylmalate synthase OS=Neisseria meningitidis serogroup B (strain MC58) GN=leuA PE=1 SV=1 | 34 | 330 | 4.0E-06 |
| sp|Q8TW28|AKSA_METKA | Putative homocitrate synthase AksA OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=aksA PE=3 SV=1 | 157 | 362 | 4.0E-06 |
| sp|Q2LWJ3|LEU1_SYNAS | 2-isopropylmalate synthase OS=Syntrophus aciditrophicus (strain SB) GN=leuA PE=3 SV=1 | 37 | 362 | 5.0E-06 |
| sp|C0ZDU6|HOA_BREBN | 4-hydroxy-2-oxovalerate aldolase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=BBR47_29780 PE=3 SV=1 | 216 | 337 | 8.0E-06 |
| sp|A8H9A1|LEU1_SHEPA | 2-isopropylmalate synthase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=leuA PE=3 SV=1 | 35 | 362 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003824 | catalytic activity | Yes |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4030 MSALRPAVCRACRRSQAQLRRGLATASRQQPPPQSNRVKLVEVGPRDGLQNEKRTIPVATKIELIERLARTGVST IEAGSFVSPKWVPQMANSSDIMEHLLERKIQSPAPMTYSFLVPNVKGLENAAGILKQHLGAFSTQLDPGADEAAA ARPVVEVAVFAAATESFSQRNLNCDVQTSLERFKAVIQDAKALGLRVRAYVSVVLGCPFEGFDVDPHRVAEVATD LLESGADEISLGDTTGMGTAPRTAALLKCMTAAGIRNEDVAMHFHDTYGQALVNTAVALEHGIRTFDSSVGGLGG CPYSPGATGNVATENMVYFMETLGMDTGIDLDAVADIGAWITAELGKANDSSVGKAVLGARARGAAGTAEA* |
| Coding | >Hirsu2|4030 ATGTCTGCACTTCGACCAGCCGTCTGCAGGGCTTGCAGGCGGTCCCAGGCCCAATTACGGAGGGGCCTCGCCACG GCCAGCCGGCAGCAGCCTCCGCCGCAGTCGAACCGGGTCAAGCTTGTCGAGGTCGGACCCCGCGACGGGCTGCAG AACGAGAAGAGGACGATTCCGGTGGCGACCAAGATCGAGCTGATTGAGCGGCTGGCGAGGACGGGCGTGTCGACC ATCGAGGCCGGGTCTTTTGTGTCTCCGAAATGGGTTCCTCAGATGGCCAACTCTAGCGACATCATGGAGCACCTG CTCGAGCGCAAGATCCAGTCGCCCGCGCCGATGACGTACTCCTTCCTCGTGCCCAACGTCAAGGGGCTGGAGAAC GCGGCGGGCATCCTCAAACAGCACCTCGGGGCCTTCTCGACGCAGCTGGACCCGGGCGCGGACGAGGCGGCGGCG GCGCGGCCCGTGGTGGAGGTGGCCGTGTTCGCGGCGGCGACGGAGAGCTTCTCGCAGCGGAACCTCAACTGCGAC GTGCAGACGTCGCTGGAGCGGTTCAAGGCGGTGATCCAGGACGCCAAGGCGCTGGGGCTGCGCGTGCGCGCCTAC GTCTCCGTCGTGCTGGGCTGCCCGTTCGAGGGCTTCGACGTCGACCCGCACCGGGTGGCCGAGGTGGCGACGGAC CTGCTCGAGTCGGGCGCCGACGAGATCTCGCTCGGCGACACGACGGGCATGGGCACGGCGCCGCGGACGGCGGCC CTGCTCAAGTGCATGACGGCGGCGGGGATCCGCAACGAGGACGTGGCCATGCACTTCCACGACACGTACGGGCAG GCCCTCGTCAACACGGCCGTCGCGCTCGAGCACGGCATCCGCACCTTCGACAGCAGCGTCGGCGGCCTGGGCGGC TGCCCGTACAGCCCCGGCGCCACCGGCAACGTCGCGACCGAGAACATGGTCTACTTCATGGAGACGCTCGGCATG GACACGGGCATCGACCTCGACGCCGTGGCGGACATTGGCGCCTGGATCACGGCCGAGCTGGGCAAGGCCAACGAC AGCTCCGTCGGCAAGGCCGTGCTCGGCGCGAGGGCGAGGGGGGCGGCGGGGACGGCCGAGGCGTGA |
| Transcript | >Hirsu2|4030 ATGTCTGCACTTCGACCAGCCGTCTGCAGGGCTTGCAGGCGGTCCCAGGCCCAATTACGGAGGGGCCTCGCCACG GCCAGCCGGCAGCAGCCTCCGCCGCAGTCGAACCGGGTCAAGCTTGTCGAGGTCGGACCCCGCGACGGGCTGCAG AACGAGAAGAGGACGATTCCGGTGGCGACCAAGATCGAGCTGATTGAGCGGCTGGCGAGGACGGGCGTGTCGACC ATCGAGGCCGGGTCTTTTGTGTCTCCGAAATGGGTTCCTCAGATGGCCAACTCTAGCGACATCATGGAGCACCTG CTCGAGCGCAAGATCCAGTCGCCCGCGCCGATGACGTACTCCTTCCTCGTGCCCAACGTCAAGGGGCTGGAGAAC GCGGCGGGCATCCTCAAACAGCACCTCGGGGCCTTCTCGACGCAGCTGGACCCGGGCGCGGACGAGGCGGCGGCG GCGCGGCCCGTGGTGGAGGTGGCCGTGTTCGCGGCGGCGACGGAGAGCTTCTCGCAGCGGAACCTCAACTGCGAC GTGCAGACGTCGCTGGAGCGGTTCAAGGCGGTGATCCAGGACGCCAAGGCGCTGGGGCTGCGCGTGCGCGCCTAC GTCTCCGTCGTGCTGGGCTGCCCGTTCGAGGGCTTCGACGTCGACCCGCACCGGGTGGCCGAGGTGGCGACGGAC CTGCTCGAGTCGGGCGCCGACGAGATCTCGCTCGGCGACACGACGGGCATGGGCACGGCGCCGCGGACGGCGGCC CTGCTCAAGTGCATGACGGCGGCGGGGATCCGCAACGAGGACGTGGCCATGCACTTCCACGACACGTACGGGCAG GCCCTCGTCAACACGGCCGTCGCGCTCGAGCACGGCATCCGCACCTTCGACAGCAGCGTCGGCGGCCTGGGCGGC TGCCCGTACAGCCCCGGCGCCACCGGCAACGTCGCGACCGAGAACATGGTCTACTTCATGGAGACGCTCGGCATG GACACGGGCATCGACCTCGACGCCGTGGCGGACATTGGCGCCTGGATCACGGCCGAGCTGGGCAAGGCCAACGAC AGCTCCGTCGGCAAGGCCGTGCTCGGCGCGAGGGCGAGGGGGGCGGCGGGGACGGCCGAGGCGTGA |
| Gene | >Hirsu2|4030 ATGTCTGCACTTCGACCAGCCGTCTGCAGGGCTTGCAGGCGGTCCCAGGCCCAATTACGGAGGGGCCTCGCCACG GCCAGCCGGCAGCAGCCTCCGCCGCAGTCGAACCGGGTCAAGCTTGTCGAGGTCGGACCCCGCGACGGGCTGCAG AACGAGAAGAGGACGATTCCGGTGGCGACCAAGATCGAGCTGATTGAGCGGCTGGCGAGGACGGGCGTGTCGACC ATCGAGGCCGGGTCTTTTGTGTCTCCGAAATGGGTTCCTCAGGTGAGCTTGGCGCTTGCGGGATGCGACGACGGG AGGCTGATTCCAGGCAATCTGTCGATGTGTATAGATGGCCAACTCTAGCGACATCATGGAGCACCTGCTCGAGCG CAAGATCCAGTCGCCCGCGCCGATGACGTACTCCTTCCTCGTGCCCAACGTCAAGGGGCTGGAGAACGCGGCGGG CATCCTCAAACAGCACCTCGGGGCCTTCTCGACGCAGCTGGACCCGGGCGCGGACGAGGCGGCGGCGGCGCGGCC CGTGGTGGAGGTGGCCGTGTTCGCGGCGGCGACGGAGAGCTTCTCGCAGCGGAACCTCAACTGCGACGTGCAGAC GTCGCTGGAGCGGTTCAAGGCGGTGATCCAGGACGCCAAGGCGCTGGGGCTGCGCGTGCGCGCCTACGTCTCCGT CGTGCTGGGCTGCCCGTTCGAGGGCTTCGACGTCGACCCGCACCGGGTGGCCGAGGTGGCGACGGACCTGCTCGA GTCGGGCGCCGACGAGATCTCGCTCGGCGACACGACGGGCATGGGCACGGCGCCGCGGACGGCGGCCCTGCTCAA GTGCATGACGGCGGCGGGGATCCGCAACGAGGACGTGGCCATGCACTTCCACGACACGTACGGGCAGGCCCTCGT CAACACGGCCGTCGCGCTCGAGCACGGCATCCGCACCTTCGACAGCAGCGTCGGCGGCCTGGGCGGCTGCCCGTA CAGCCCCGGCGCCACCGGCAACGTCGCGACCGAGAACATGGTCTACTTCATGGAGACGCTCGGCATGGACACGGG CATCGACCTCGACGCCGTGGCGGACATTGGCGCCTGGATCACGGCCGAGCTGGGCAAGGCCAACGACAGCTCCGT CGGCAAGGCCGTGCTCGGCGCGAGGGCGAGGGGGGCGGCGGGGACGGCCGAGGCGTGA |