Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|4023
Gene name
LocationContig_21:1464..2808
Strand-
Gene length (bp)1344
Transcript length (bp)1248
Coding sequence length (bp)1248
Protein length (aa) 416

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01263 Aldose_epim Aldose 1-epimerase 2.1E-47 42 383

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|D4AMB9|GALM_ARTBC Probable aldose 1-epimerase ARB_05372 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05372 PE=1 SV=1 14 405 4.0E-79
sp|Q96C23|GALM_HUMAN Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV=1 36 383 2.0E-35
sp|Q9GKX6|GALM_PIG Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1 36 383 4.0E-35
sp|Q5EA79|GALM_BOVIN Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1 36 383 6.0E-35
sp|Q5R8U1|GALM_PONAB Aldose 1-epimerase OS=Pongo abelii GN=GALM PE=2 SV=1 36 383 1.0E-33
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Swissprot ID Swissprot Description Start End E-value
sp|D4AMB9|GALM_ARTBC Probable aldose 1-epimerase ARB_05372 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_05372 PE=1 SV=1 14 405 4.0E-79
sp|Q96C23|GALM_HUMAN Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV=1 36 383 2.0E-35
sp|Q9GKX6|GALM_PIG Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1 36 383 4.0E-35
sp|Q5EA79|GALM_BOVIN Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1 36 383 6.0E-35
sp|Q5R8U1|GALM_PONAB Aldose 1-epimerase OS=Pongo abelii GN=GALM PE=2 SV=1 36 383 1.0E-33
sp|Q8K157|GALM_MOUSE Aldose 1-epimerase OS=Mus musculus GN=Galm PE=1 SV=1 36 383 1.0E-32
sp|Q66HG4|GALM_RAT Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE=1 SV=1 36 383 2.0E-32
sp|P05149|GALM_ACICA Aldose 1-epimerase OS=Acinetobacter calcoaceticus GN=mro PE=1 SV=1 42 338 3.0E-28
sp|P0A9C4|GALM_SHIFL Aldose 1-epimerase OS=Shigella flexneri GN=galM PE=3 SV=1 43 404 4.0E-26
sp|P0A9C3|GALM_ECOLI Aldose 1-epimerase OS=Escherichia coli (strain K12) GN=galM PE=1 SV=1 43 404 4.0E-26
sp|P31765|GALM_HAEIN Aldose 1-epimerase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=galM PE=3 SV=2 68 383 5.0E-25
sp|Q9HDU3|GAL10_SCHPO Bifunctional protein gal10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gal10 PE=3 SV=1 44 413 2.0E-21
sp|Q03PA4|MALEP_LACBA Maltose epimerase OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=LVIS_1908 PE=1 SV=1 43 407 6.0E-16
sp|P04397|GAL10_YEAST Bifunctional protein GAL10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAL10 PE=1 SV=2 34 405 2.0E-13
sp|P40801|GAL10_PACTA Bifunctional protein GAL10 OS=Pachysolen tannophilus GN=GAL10 PE=2 SV=1 56 345 4.0E-13
sp|P09609|GAL10_KLULA Bifunctional protein GAL10 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=GAL10 PE=2 SV=2 41 404 4.0E-13
sp|P21955|GALM_STRTR Aldose 1-epimerase OS=Streptococcus thermophilus GN=galM PE=3 SV=1 42 380 1.0E-11
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GO

GO Term Description Terminal node
GO:0016853 isomerase activity Yes
GO:0005975 carbohydrate metabolic process Yes
GO:0071704 organic substance metabolic process No
GO:0008152 metabolic process No
GO:0003824 catalytic activity No
GO:0044238 primary metabolic process No
GO:0008150 biological_process No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 23 0.5

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|4023
MRPTWQWLATLVTAASLPLARADDNGGNASPDQDGKYWIYGDGISAAFVAYGASIANLIFRDQYGIERDLVAGFD
NASYYTEDKQHPHLGGVPGRYANRIKNSSFEIDGVRYKVKANENPTADLPHGLDTLHGGPDGWDWRNFSVVDHSH
SSLTFSFVDADGKEGFPGKVISFITYTLTGRDWDINMVAMAVDKKTPIMLSSHTYWNLDGFANNETNTALNHTMH
LPYSGQRVGVDNILVPTGEILSNAKGSVNDFWSKPKQIGASLDDPELENNCGFNCTGYDNCFTVNRAGLGNFNWR
TEGPVATLSSDWSGIQLDVFTNQDAFQLYSCNGQNGTLALKKTQGVQSGDDGNAKGFPRTIPKYGCVVLEVQDYI
DGINHPEWMRKQIYGPSDDPYVLQAKYRFSLKSEHAEKGN*
Coding >Hirsu2|4023
ATGAGGCCGACGTGGCAGTGGCTCGCGACCCTGGTGACGGCGGCTTCGCTGCCATTGGCCCGCGCCGACGACAAC
GGCGGCAACGCCTCGCCCGACCAGGACGGCAAGTACTGGATCTACGGCGACGGCATCTCGGCCGCCTTCGTCGCC
TACGGAGCGTCCATCGCCAACCTCATTTTCCGGGACCAGTACGGCATCGAGCGTGACCTCGTCGCCGGCTTCGAC
AATGCCTCCTACTACACCGAGGACAAGCAGCACCCTCATTTGGGCGGCGTCCCCGGCCGCTATGCCAATCGCATC
AAGAACAGCTCCTTCGAGATCGACGGCGTCCGGTACAAGGTCAAGGCCAACGAGAACCCCACGGCCGACTTGCCC
CACGGCCTCGACACCCTGCACGGCGGGCCCGATGGCTGGGATTGGCGCAACTTCAGCGTCGTCGACCATAGCCAC
TCCAGCCTCACCTTCTCCTTCGTCGATGCCGACGGCAAGGAGGGCTTCCCCGGCAAGGTCATCTCCTTCATCACC
TACACCCTCACCGGCCGCGACTGGGACATCAATATGGTGGCCATGGCCGTAGACAAGAAGACGCCCATCATGCTC
AGCAGCCACACCTACTGGAACCTGGACGGCTTCGCCAATAACGAGACCAACACGGCCCTCAACCACACCATGCAC
CTGCCCTATAGCGGCCAGCGCGTCGGCGTCGACAACATCCTCGTCCCCACCGGCGAGATCCTCTCCAACGCAAAG
GGCTCCGTTAACGACTTCTGGAGCAAGCCCAAGCAGATCGGCGCGTCACTCGACGACCCGGAGCTGGAAAATAAC
TGCGGCTTCAACTGCACCGGCTACGACAATTGCTTCACAGTCAACCGCGCCGGTCTCGGAAACTTCAACTGGCGC
ACCGAAGGGCCTGTCGCGACCCTGTCCTCGGACTGGTCGGGCATCCAGCTCGACGTCTTCACCAACCAGGACGCC
TTCCAGCTGTACTCGTGCAACGGCCAGAACGGCACCTTGGCGCTGAAGAAGACGCAGGGCGTCCAGAGCGGTGAC
GACGGAAACGCCAAGGGCTTTCCGCGCACCATTCCCAAGTACGGCTGTGTTGTGCTCGAGGTCCAGGACTATATC
GACGGCATCAACCACCCCGAGTGGATGCGCAAGCAGATTTATGGCCCCTCAGACGACCCCTACGTGCTTCAGGCC
AAATACAGGTTCAGCCTCAAGTCGGAGCACGCGGAGAAGGGCAACTAA
Transcript >Hirsu2|4023
ATGAGGCCGACGTGGCAGTGGCTCGCGACCCTGGTGACGGCGGCTTCGCTGCCATTGGCCCGCGCCGACGACAAC
GGCGGCAACGCCTCGCCCGACCAGGACGGCAAGTACTGGATCTACGGCGACGGCATCTCGGCCGCCTTCGTCGCC
TACGGAGCGTCCATCGCCAACCTCATTTTCCGGGACCAGTACGGCATCGAGCGTGACCTCGTCGCCGGCTTCGAC
AATGCCTCCTACTACACCGAGGACAAGCAGCACCCTCATTTGGGCGGCGTCCCCGGCCGCTATGCCAATCGCATC
AAGAACAGCTCCTTCGAGATCGACGGCGTCCGGTACAAGGTCAAGGCCAACGAGAACCCCACGGCCGACTTGCCC
CACGGCCTCGACACCCTGCACGGCGGGCCCGATGGCTGGGATTGGCGCAACTTCAGCGTCGTCGACCATAGCCAC
TCCAGCCTCACCTTCTCCTTCGTCGATGCCGACGGCAAGGAGGGCTTCCCCGGCAAGGTCATCTCCTTCATCACC
TACACCCTCACCGGCCGCGACTGGGACATCAATATGGTGGCCATGGCCGTAGACAAGAAGACGCCCATCATGCTC
AGCAGCCACACCTACTGGAACCTGGACGGCTTCGCCAATAACGAGACCAACACGGCCCTCAACCACACCATGCAC
CTGCCCTATAGCGGCCAGCGCGTCGGCGTCGACAACATCCTCGTCCCCACCGGCGAGATCCTCTCCAACGCAAAG
GGCTCCGTTAACGACTTCTGGAGCAAGCCCAAGCAGATCGGCGCGTCACTCGACGACCCGGAGCTGGAAAATAAC
TGCGGCTTCAACTGCACCGGCTACGACAATTGCTTCACAGTCAACCGCGCCGGTCTCGGAAACTTCAACTGGCGC
ACCGAAGGGCCTGTCGCGACCCTGTCCTCGGACTGGTCGGGCATCCAGCTCGACGTCTTCACCAACCAGGACGCC
TTCCAGCTGTACTCGTGCAACGGCCAGAACGGCACCTTGGCGCTGAAGAAGACGCAGGGCGTCCAGAGCGGTGAC
GACGGAAACGCCAAGGGCTTTCCGCGCACCATTCCCAAGTACGGCTGTGTTGTGCTCGAGGTCCAGGACTATATC
GACGGCATCAACCACCCCGAGTGGATGCGCAAGCAGATTTATGGCCCCTCAGACGACCCCTACGTGCTTCAGGCC
AAATACAGGTTCAGCCTCAAGTCGGAGCACGCGGAGAAGGGCAACTAA
Gene >Hirsu2|4023
ATGAGGCCGACGTGGCAGTGGCTCGCGACCCTGGTGACGGCGGCTTCGCTGCCATTGGCCCGCGCCGACGACAAC
GGCGGCAACGCCTCGCCCGACCAGGACGGCAAGTACTGGATCTACGGCGACGGCATCTCGGCCGCCTTCGTCGCC
TACGGAGCGTCCATCGCCAACCTCATTTTCCGGGACCAGTACGGCATCGAGCGTGACCTCGTCGCCGGCTTCGAC
AATGCCTCCTACTACACCGAGGACAAGCAGCACCCTCATTTGGGCGGCGTCCCCGGCCGCTATGCCAATCGCATC
AAGAACAGCTCCTTCGAGATCGACGGCGTCCGGTACAAGGTCAAGGCCAACGAGAACCCCACGGCCGACTTGCCC
CACGGCCTCGACACCCTGCACGGCGGGCCCGATGGCTGGGATTGGCGCAACTTCAGCGTCGTCGACCATAGCCAC
TCCAGCCTCACCTTCTCCTTCGTCGATGCCGACGGCAAGGAGGGCTTCCCCGGCAAGGTCATCTCCTTCATCACC
TACACCCTCACCGGCCGCGACTGGGACATCAATATGGTGGCCATGGCCGTAGACAAGAAGACGCCCATCATGCTC
AGCAGCCACACCTACTGGAACCTGGACGGCTTCGCCAATAACGAGACCAACACGGCCCTCAACCACACCATGCAC
CTGCCCTATAGCGGCCAGCGCGTCGGCGTCGACAACATCCTCGTCCCCACCGGCGAGATCCTCTCCAACGCAAAG
GGCTCCGTTAACGACTTCTGGAGCAAGCCCAAGCAGATCGGCGCGTCACTCGACGACCCGGAGCTGGAAAATAAC
TGCGGCTTCAACTGCACCGGCTACGGTACGTCGCTAGGAGGATGGACGGGGGGGGATTCTATTTTATTTTCTTTT
TTTTTTCCTGTCCTTGCTGACCATAGGCATCTTCGCCATCACGCAGACAATTGCTTCACAGTCAACCGCGCCGGT
CTCGGAAACTTCAACTGGCGCACCGAAGGGCCTGTCGCGACCCTGTCCTCGGACTGGTCGGGCATCCAGCTCGAC
GTCTTCACCAACCAGGACGCCTTCCAGCTGTACTCGTGCAACGGCCAGAACGGCACCTTGGCGCTGAAGAAGACG
CAGGGCGTCCAGAGCGGTGACGACGGAAACGCCAAGGGCTTTCCGCGCACCATTCCCAAGTACGGCTGTGTTGTG
CTCGAGGTCCAGGACTATATCGACGGCATCAACCACCCCGAGTGGATGCGCAAGCAGATTTATGGCCCCTCAGAC
GACCCCTACGTGCTTCAGGCCAAATACAGGTTCAGCCTCAAGTCGGAGCACGCGGAGAAGGGCAACTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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