© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|4016 |
| Gene name | |
| Location | Contig_2095:460..1551 |
| Strand | - |
| Gene length (bp) | 1091 |
| Transcript length (bp) | 978 |
| Coding sequence length (bp) | 978 |
| Protein length (aa) | 326 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1793 | 0.125 | 0.8807 | 0.1306 | 0.1125 | 0.2037 | 0.2075 | 0.2008 | 0.1168 | 0.0246 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 29 | 0.999508 |
| Orthofinder run ID | 4 |
| Orthogroup | 7571 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|3644 |
| Ophiocordyceps subramaniannii | Hirsu2|4016 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4016 MADRLPPLRLARRSVLLLLSAYLAVRVVAQDCVPGPVALPITNVTLSTGKVRRGIAVSVGSPVQKLALLPKWDNN NTFLYGRNCEDHDLANTSAKCTTFRGGVYDPAVSETRGPSDPGSGPDGLPPDLWDPRTYRPLVDTVRLDGNISMA KVPLASVLDFSRWDTEGYDPQNILGLDAGSTLVASLRRDGRIASDAVGFYWGLDGVGDQDQMAGSLVLGGYDKAK TYGNGIKLQMSAKKDCSTRMLVSLVDITLNFPNGTNVSLFPHQNGGDQLRACLMPERPILMDMPLKSQFETLLAA VDNNEFGRSTGIDFWSIVLNPERPM* |
| Coding | >Hirsu2|4016 ATGGCGGACCGGCTCCCGCCTCTCCGTCTCGCCCGGCGGTCCGTCCTGCTCCTCCTGTCCGCCTATCTTGCCGTC CGAGTCGTGGCACAGGACTGCGTGCCCGGACCGGTGGCCCTGCCCATCACCAACGTCACCTTGTCGACGGGCAAG GTCCGTCGCGGCATCGCCGTCAGCGTCGGCAGTCCGGTGCAAAAGCTCGCCTTGCTGCCGAAATGGGACAACAAC AACACGTTCCTCTATGGCCGCAACTGCGAGGATCACGACTTGGCCAACACGAGCGCCAAGTGCACCACGTTCCGA GGGGGCGTGTACGATCCGGCCGTGTCGGAAACCAGGGGCCCCTCTGACCCGGGCTCGGGCCCCGACGGCCTCCCG CCGGACCTGTGGGACCCCCGGACGTACAGGCCCTTGGTCGACACGGTGCGGCTCGACGGCAACATCAGCATGGCC AAGGTGCCGCTGGCGAGCGTGCTCGACTTCAGCCGCTGGGACACGGAGGGCTACGACCCGCAGAACATCCTCGGC CTCGACGCCGGCTCGACCTTGGTCGCCTCCCTGCGCAGGGACGGCCGCATCGCCTCCGACGCCGTCGGCTTCTAC TGGGGGCTCGACGGCGTCGGCGACCAGGACCAGATGGCCGGCTCCCTCGTGCTGGGCGGCTACGACAAGGCCAAG ACGTACGGCAACGGCATCAAGCTGCAAATGTCGGCCAAGAAGGACTGCTCGACCCGGATGCTGGTCTCGCTCGTC GACATCACCCTCAACTTCCCCAACGGCACCAACGTCTCCCTCTTCCCCCACCAGAACGGCGGCGACCAGCTGCGG GCCTGTCTGATGCCGGAGCGCCCCATCCTGATGGACATGCCGCTGAAGAGCCAGTTCGAGACCCTGCTGGCGGCC GTCGACAACAACGAGTTCGGCCGCTCCACCGGCATCGACTTCTGGTCCATCGTCCTCAACCCCGAAAGGCCCATG TAG |
| Transcript | >Hirsu2|4016 ATGGCGGACCGGCTCCCGCCTCTCCGTCTCGCCCGGCGGTCCGTCCTGCTCCTCCTGTCCGCCTATCTTGCCGTC CGAGTCGTGGCACAGGACTGCGTGCCCGGACCGGTGGCCCTGCCCATCACCAACGTCACCTTGTCGACGGGCAAG GTCCGTCGCGGCATCGCCGTCAGCGTCGGCAGTCCGGTGCAAAAGCTCGCCTTGCTGCCGAAATGGGACAACAAC AACACGTTCCTCTATGGCCGCAACTGCGAGGATCACGACTTGGCCAACACGAGCGCCAAGTGCACCACGTTCCGA GGGGGCGTGTACGATCCGGCCGTGTCGGAAACCAGGGGCCCCTCTGACCCGGGCTCGGGCCCCGACGGCCTCCCG CCGGACCTGTGGGACCCCCGGACGTACAGGCCCTTGGTCGACACGGTGCGGCTCGACGGCAACATCAGCATGGCC AAGGTGCCGCTGGCGAGCGTGCTCGACTTCAGCCGCTGGGACACGGAGGGCTACGACCCGCAGAACATCCTCGGC CTCGACGCCGGCTCGACCTTGGTCGCCTCCCTGCGCAGGGACGGCCGCATCGCCTCCGACGCCGTCGGCTTCTAC TGGGGGCTCGACGGCGTCGGCGACCAGGACCAGATGGCCGGCTCCCTCGTGCTGGGCGGCTACGACAAGGCCAAG ACGTACGGCAACGGCATCAAGCTGCAAATGTCGGCCAAGAAGGACTGCTCGACCCGGATGCTGGTCTCGCTCGTC GACATCACCCTCAACTTCCCCAACGGCACCAACGTCTCCCTCTTCCCCCACCAGAACGGCGGCGACCAGCTGCGG GCCTGTCTGATGCCGGAGCGCCCCATCCTGATGGACATGCCGCTGAAGAGCCAGTTCGAGACCCTGCTGGCGGCC GTCGACAACAACGAGTTCGGCCGCTCCACCGGCATCGACTTCTGGTCCATCGTCCTCAACCCCGAAAGGCCCATG TAG |
| Gene | >Hirsu2|4016 ATGGCGGACCGGCTCCCGCCTCTCCGTCTCGCCCGGCGGTCCGTCCTGCTCCTCCTGTCCGCCTATCTTGCCGTC CGAGTCGTGGCACAGGACTGCGTGCCCGGACCGGTGGCCCTGCCCATCACCAACGTCACCTTGTCGACGGGCAAG GTCCGTCGCGGCATCGCCGTCAGCGTCGGCAGTCCGGTGCAAAAGCTCGCCTTGCTGCCGAAATGGTGAGTAGGC GTGACGTGGCCCCCGTCGCCGTTTGATATCCAAAGCCCGCATCTTTCTTCGTCTGCCTTTCCTTAACCTGTCTCC CTCCTCTTCCCCCCCCCCGGGCGCGCAGGGACAACAACAACACGTTCCTCTATGGCCGCAACTGCGAGGATCACG ACTTGGCCAACACGAGCGCCAAGTGCACCACGTTCCGAGGGGGCGTGTACGATCCGGCCGTGTCGGAAACCAGGG GCCCCTCTGACCCGGGCTCGGGCCCCGACGGCCTCCCGCCGGACCTGTGGGACCCCCGGACGTACAGGCCCTTGG TCGACACGGTGCGGCTCGACGGCAACATCAGCATGGCCAAGGTGCCGCTGGCGAGCGTGCTCGACTTCAGCCGCT GGGACACGGAGGGCTACGACCCGCAGAACATCCTCGGCCTCGACGCCGGCTCGACCTTGGTCGCCTCCCTGCGCA GGGACGGCCGCATCGCCTCCGACGCCGTCGGCTTCTACTGGGGGCTCGACGGCGTCGGCGACCAGGACCAGATGG CCGGCTCCCTCGTGCTGGGCGGCTACGACAAGGCCAAGACGTACGGCAACGGCATCAAGCTGCAAATGTCGGCCA AGAAGGACTGCTCGACCCGGATGCTGGTCTCGCTCGTCGACATCACCCTCAACTTCCCCAACGGCACCAACGTCT CCCTCTTCCCCCACCAGAACGGCGGCGACCAGCTGCGGGCCTGTCTGATGCCGGAGCGCCCCATCCTGATGGACA TGCCGCTGAAGAGCCAGTTCGAGACCCTGCTGGCGGCCGTCGACAACAACGAGTTCGGCCGCTCCACCGGCATCG ACTTCTGGTCCATCGTCCTCAACCCCGAAAGGCCCATGTAG |