Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|4003
Gene name
LocationContig_209:15309..16083
Strand+
Gene length (bp)774
Transcript length (bp)669
Coding sequence length (bp)669
Protein length (aa) 223

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF10273 WGG Pre-rRNA-processing protein TSR2 8.5E-35 20 121

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q06672|TSR2_YEAST Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSR2 PE=1 SV=2 2 220 6.0E-23
sp|Q9UUA9|TSR2_SCHPO Pre-rRNA-processing protein tsr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tsr2 PE=3 SV=1 14 222 7.0E-12
sp|Q8C8T8|TSR2_MOUSE Pre-rRNA-processing protein TSR2 homolog OS=Mus musculus GN=Tsr2 PE=1 SV=1 20 221 1.0E-09
sp|Q3KRG3|TSR2_DANRE Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio GN=tsr2 PE=2 SV=1 9 150 2.0E-09
sp|Q3KPN2|TSR2_XENLA Pre-rRNA-processing protein TSR2 homolog OS=Xenopus laevis GN=tsr2 PE=2 SV=2 20 140 2.0E-09
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q06672|TSR2_YEAST Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSR2 PE=1 SV=2 2 220 6.0E-23
sp|Q9UUA9|TSR2_SCHPO Pre-rRNA-processing protein tsr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tsr2 PE=3 SV=1 14 222 7.0E-12
sp|Q8C8T8|TSR2_MOUSE Pre-rRNA-processing protein TSR2 homolog OS=Mus musculus GN=Tsr2 PE=1 SV=1 20 221 1.0E-09
sp|Q3KRG3|TSR2_DANRE Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio GN=tsr2 PE=2 SV=1 9 150 2.0E-09
sp|Q3KPN2|TSR2_XENLA Pre-rRNA-processing protein TSR2 homolog OS=Xenopus laevis GN=tsr2 PE=2 SV=2 20 140 2.0E-09
sp|Q3T090|TSR2_BOVIN Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus GN=TSR2 PE=2 SV=1 20 221 1.0E-08
sp|Q969E8|TSR2_HUMAN Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens GN=TSR2 PE=1 SV=1 20 157 2.0E-08
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 44 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|4003
MASSTQTALLPPAATRQSNFEQAVAYALHLWPALTLAVQNSWGGPDSADKRDWFAGAVVDLFPEFADAPTTTTTT
TTTTTTKGPRQAPEEPDTEHVETVLLQVMMDEFEVNVDDDSAAEVAGQVVRTRSQCAVGEFGEVETLRERFQRLK
GARVDQMFRRADDADQDTDWETDDDDDDGDDDDAHDDGGVDVSMDDAPPVPKEKPAPQVDEDGFTMVTKKRK*
Coding >Hirsu2|4003
ATGGCCTCATCGACGCAGACGGCGCTGCTGCCTCCAGCCGCCACGCGCCAGTCCAATTTCGAGCAGGCCGTCGCC
TACGCGCTGCACCTCTGGCCGGCCCTGACGCTGGCGGTGCAGAACAGCTGGGGAGGCCCCGACTCGGCCGACAAG
CGGGACTGGTTCGCGGGCGCCGTCGTCGATCTGTTCCCCGAGTTCGCCGACGCCCCGACGACGACGACGACGACG
ACGACGACGACGACGACCAAGGGCCCGCGCCAGGCCCCCGAGGAGCCGGACACGGAGCACGTCGAGACGGTGCTG
CTCCAGGTCATGATGGACGAGTTCGAGGTCAACGTCGACGACGACTCGGCCGCCGAGGTCGCGGGCCAGGTCGTG
CGCACCAGGTCCCAGTGCGCCGTCGGCGAATTTGGCGAGGTCGAGACGCTGCGCGAGCGGTTCCAGAGGCTCAAG
GGCGCCAGAGTCGATCAGATGTTCCGGCGAGCCGACGACGCGGACCAGGACACCGACTGGGAGACTGACGACGAC
GACGACGATGGTGATGACGACGACGCCCACGACGATGGAGGCGTTGACGTCTCCATGGACGATGCGCCCCCTGTG
CCCAAGGAGAAGCCAGCCCCCCAGGTCGACGAGGACGGCTTCACCATGGTTACCAAGAAAAGAAAGTAA
Transcript >Hirsu2|4003
ATGGCCTCATCGACGCAGACGGCGCTGCTGCCTCCAGCCGCCACGCGCCAGTCCAATTTCGAGCAGGCCGTCGCC
TACGCGCTGCACCTCTGGCCGGCCCTGACGCTGGCGGTGCAGAACAGCTGGGGAGGCCCCGACTCGGCCGACAAG
CGGGACTGGTTCGCGGGCGCCGTCGTCGATCTGTTCCCCGAGTTCGCCGACGCCCCGACGACGACGACGACGACG
ACGACGACGACGACGACCAAGGGCCCGCGCCAGGCCCCCGAGGAGCCGGACACGGAGCACGTCGAGACGGTGCTG
CTCCAGGTCATGATGGACGAGTTCGAGGTCAACGTCGACGACGACTCGGCCGCCGAGGTCGCGGGCCAGGTCGTG
CGCACCAGGTCCCAGTGCGCCGTCGGCGAATTTGGCGAGGTCGAGACGCTGCGCGAGCGGTTCCAGAGGCTCAAG
GGCGCCAGAGTCGATCAGATGTTCCGGCGAGCCGACGACGCGGACCAGGACACCGACTGGGAGACTGACGACGAC
GACGACGATGGTGATGACGACGACGCCCACGACGATGGAGGCGTTGACGTCTCCATGGACGATGCGCCCCCTGTG
CCCAAGGAGAAGCCAGCCCCCCAGGTCGACGAGGACGGCTTCACCATGGTTACCAAGAAAAGAAAGTAA
Gene >Hirsu2|4003
ATGGCCTCATCGACGCAGACGGCGCTGCTGCCTCCAGCCGGTACGTTTTGAACAAAGACGCCCCCTTCCCCCGCC
CTCCTGTGTTTCTCCTCCGTCCCCCCCTTTCAGACGGGCGCACGTGCTCAACTCCACTGCCAAACACCAGCCACG
CGCCAGTCCAATTTCGAGCAGGCCGTCGCCTACGCGCTGCACCTCTGGCCGGCCCTGACGCTGGCGGTGCAGAAC
AGCTGGGGAGGCCCCGACTCGGCCGACAAGCGGGACTGGTTCGCGGGCGCCGTCGTCGATCTGTTCCCCGAGTTC
GCCGACGCCCCGACGACGACGACGACGACGACGACGACGACGACGACCAAGGGCCCGCGCCAGGCCCCCGAGGAG
CCGGACACGGAGCACGTCGAGACGGTGCTGCTCCAGGTCATGATGGACGAGTTCGAGGTCAACGTCGACGACGAC
TCGGCCGCCGAGGTCGCGGGCCAGGTCGTGCGCACCAGGTCCCAGTGCGCCGTCGGCGAATTTGGCGAGGTCGAG
ACGCTGCGCGAGCGGTTCCAGAGGCTCAAGGGCGCCAGAGTCGATCAGATGTTCCGGCGAGCCGACGACGCGGAC
CAGGACACCGACTGGGAGACTGACGACGACGACGACGATGGTGATGACGACGACGCCCACGACGATGGAGGCGTT
GACGTCTCCATGGACGATGCGCCCCCTGTGCCCAAGGAGAAGCCAGCCCCCCAGGTCGACGAGGACGGCTTCACC
ATGGTTACCAAGAAAAGAAAGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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