© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3999 |
| Gene name | |
| Location | Contig_209:4586..5561 |
| Strand | - |
| Gene length (bp) | 975 |
| Transcript length (bp) | 975 |
| Coding sequence length (bp) | 975 |
| Protein length (aa) | 325 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P0C6U3|R1A_CVHN1 | Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N1) GN=1a PE=1 SV=1 | 69 | 282 | 8.0E-07 |
| sp|P0C6X2|R1AB_CVHN1 | Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N1) GN=rep PE=3 SV=1 | 69 | 282 | 8.0E-07 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.0925 | 0.0575 | 0.9802 | 0.0798 | 0.0605 | 0.008 | 0.0609 | 0.0407 | 0.0719 | 0.0014 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 19 | 0.999642 |
| Orthofinder run ID | 4 |
| Orthogroup | 7581 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|3999 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3999 MRYCTAAAIAMCLANGSLAAPAGLSERWVSALQDGSMRTPLNPHHHQRRNGLDDAAKKAGSQVAGRSVDAGPEGL ESAVTEVADRLRTQAESGVANSLEKRQEEEEEEEGGDDELADAVRGVAHGAGLDRRQEDDEVSDAVQGVVDDLQK RQDDDDLEEAVEGVVEDLQKRQDDDDLEEAVEGVVEGLQKRQDDDDLEEAVEGVVEDLQKRQDDDDLEEAVEGVV EGLQKRQDDDDLEEAVEGVVEDLQKRQDDEDLEGAVEGVVEGLQKRDQEDFDIEEAMSNIAGQLELQRRQEGDEG EEDEDNEELSAAIDSVANSLGFDN* |
| Coding | >Hirsu2|3999 ATGAGGTACTGCACCGCCGCCGCCATTGCCATGTGCCTGGCCAACGGGTCGCTCGCGGCCCCGGCGGGCCTCAGC GAGCGCTGGGTGTCGGCGCTGCAGGACGGCAGCATGCGCACGCCGCTCAACCCGCACCACCACCAGCGGCGCAAC GGCCTGGACGACGCGGCCAAGAAGGCCGGCAGCCAGGTGGCCGGCCGCTCCGTCGACGCCGGGCCCGAGGGTCTC GAGTCCGCCGTCACCGAGGTCGCGGACCGCCTGCGCACCCAGGCCGAGTCCGGCGTCGCCAACAGCCTGGAGAAG CGGCAGGAAGAGGAGGAGGAGGAGGAGGGCGGGGACGACGAGCTGGCGGACGCGGTGAGGGGCGTTGCGCACGGC GCGGGCCTCGACAGGCGCCAGGAGGACGACGAGGTCTCGGACGCGGTGCAGGGCGTTGTCGATGACTTGCAGAAG CGTCAGGATGATGACGATCTCGAGGAGGCCGTCGAGGGCGTCGTCGAAGACCTGCAGAAGCGCCAGGATGATGAC GATCTCGAGGAGGCCGTCGAGGGCGTCGTCGAAGGCCTGCAGAAGCGCCAGGATGATGACGATCTCGAGGAGGCC GTCGAGGGCGTCGTCGAAGACCTGCAGAAGCGCCAGGATGATGACGATCTCGAGGAGGCCGTCGAGGGCGTCGTC GAAGGCCTGCAGAAGCGCCAGGATGATGACGATCTCGAGGAGGCCGTCGAGGGCGTCGTCGAAGACCTGCAGAAG CGCCAGGATGACGAGGATCTCGAGGGGGCCGTCGAGGGCGTCGTTGAAGGTCTGCAGAAGCGCGACCAGGAGGAT TTCGACATCGAGGAGGCCATGAGCAACATCGCCGGCCAGCTGGAGCTTCAGAGGCGTCAGGAGGGCGACGAGGGC GAAGAGGACGAGGACAATGAGGAGCTCTCGGCGGCGATCGACAGCGTGGCCAACAGCCTGGGCTTCGACAACTAG |
| Transcript | >Hirsu2|3999 ATGAGGTACTGCACCGCCGCCGCCATTGCCATGTGCCTGGCCAACGGGTCGCTCGCGGCCCCGGCGGGCCTCAGC GAGCGCTGGGTGTCGGCGCTGCAGGACGGCAGCATGCGCACGCCGCTCAACCCGCACCACCACCAGCGGCGCAAC GGCCTGGACGACGCGGCCAAGAAGGCCGGCAGCCAGGTGGCCGGCCGCTCCGTCGACGCCGGGCCCGAGGGTCTC GAGTCCGCCGTCACCGAGGTCGCGGACCGCCTGCGCACCCAGGCCGAGTCCGGCGTCGCCAACAGCCTGGAGAAG CGGCAGGAAGAGGAGGAGGAGGAGGAGGGCGGGGACGACGAGCTGGCGGACGCGGTGAGGGGCGTTGCGCACGGC GCGGGCCTCGACAGGCGCCAGGAGGACGACGAGGTCTCGGACGCGGTGCAGGGCGTTGTCGATGACTTGCAGAAG CGTCAGGATGATGACGATCTCGAGGAGGCCGTCGAGGGCGTCGTCGAAGACCTGCAGAAGCGCCAGGATGATGAC GATCTCGAGGAGGCCGTCGAGGGCGTCGTCGAAGGCCTGCAGAAGCGCCAGGATGATGACGATCTCGAGGAGGCC GTCGAGGGCGTCGTCGAAGACCTGCAGAAGCGCCAGGATGATGACGATCTCGAGGAGGCCGTCGAGGGCGTCGTC GAAGGCCTGCAGAAGCGCCAGGATGATGACGATCTCGAGGAGGCCGTCGAGGGCGTCGTCGAAGACCTGCAGAAG CGCCAGGATGACGAGGATCTCGAGGGGGCCGTCGAGGGCGTCGTTGAAGGTCTGCAGAAGCGCGACCAGGAGGAT TTCGACATCGAGGAGGCCATGAGCAACATCGCCGGCCAGCTGGAGCTTCAGAGGCGTCAGGAGGGCGACGAGGGC GAAGAGGACGAGGACAATGAGGAGCTCTCGGCGGCGATCGACAGCGTGGCCAACAGCCTGGGCTTCGACAACTAG |
| Gene | >Hirsu2|3999 ATGAGGTACTGCACCGCCGCCGCCATTGCCATGTGCCTGGCCAACGGGTCGCTCGCGGCCCCGGCGGGCCTCAGC GAGCGCTGGGTGTCGGCGCTGCAGGACGGCAGCATGCGCACGCCGCTCAACCCGCACCACCACCAGCGGCGCAAC GGCCTGGACGACGCGGCCAAGAAGGCCGGCAGCCAGGTGGCCGGCCGCTCCGTCGACGCCGGGCCCGAGGGTCTC GAGTCCGCCGTCACCGAGGTCGCGGACCGCCTGCGCACCCAGGCCGAGTCCGGCGTCGCCAACAGCCTGGAGAAG CGGCAGGAAGAGGAGGAGGAGGAGGAGGGCGGGGACGACGAGCTGGCGGACGCGGTGAGGGGCGTTGCGCACGGC GCGGGCCTCGACAGGCGCCAGGAGGACGACGAGGTCTCGGACGCGGTGCAGGGCGTTGTCGATGACTTGCAGAAG CGTCAGGATGATGACGATCTCGAGGAGGCCGTCGAGGGCGTCGTCGAAGACCTGCAGAAGCGCCAGGATGATGAC GATCTCGAGGAGGCCGTCGAGGGCGTCGTCGAAGGCCTGCAGAAGCGCCAGGATGATGACGATCTCGAGGAGGCC GTCGAGGGCGTCGTCGAAGACCTGCAGAAGCGCCAGGATGATGACGATCTCGAGGAGGCCGTCGAGGGCGTCGTC GAAGGCCTGCAGAAGCGCCAGGATGATGACGATCTCGAGGAGGCCGTCGAGGGCGTCGTCGAAGACCTGCAGAAG CGCCAGGATGACGAGGATCTCGAGGGGGCCGTCGAGGGCGTCGTTGAAGGTCTGCAGAAGCGCGACCAGGAGGAT TTCGACATCGAGGAGGCCATGAGCAACATCGCCGGCCAGCTGGAGCTTCAGAGGCGTCAGGAGGGCGACGAGGGC GAAGAGGACGAGGACAATGAGGAGCTCTCGGCGGCGATCGACAGCGTGGCCAACAGCCTGGGCTTCGACAACTAG |