© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3982 |
| Gene name | |
| Location | Contig_208:19968..20763 |
| Strand | + |
| Gene length (bp) | 795 |
| Transcript length (bp) | 795 |
| Coding sequence length (bp) | 795 |
| Protein length (aa) | 265 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF14040 | DNase_NucA_NucB | Deoxyribonuclease NucA/NucB | 2.0E-15 | 28 | 144 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.2044 | 0.167 | 0.9149 | 0.1227 | 0.1486 | 0.1139 | 0.1703 | 0.1941 | 0.1768 | 0.0116 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 23 | 0.999774 |
| Orthofinder run ID | 4 |
| Orthogroup | 6122 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3982 MSKRLLALRAVIAYVFLDSRAWAAPPDVTFQCSKMPEVCTNMCWAVRCASPVFPQTLSWDDPDETTQGRRLASAG CQKSGNKCGAKSKDGVGHRGGRFTSCDEYPFVSTKESTLFSNGHQVSRCVPRSENARRRQALKAVYGRWKKQGLG SHGLAVSFGSPAAEGVNYCTNQPCKNDGFEVQDKQIKKRGQDPVFKFYAATSGIVLGSLEQIETPSNFTRLLDND EATPAHCDSWVERVGGADIRVISDVLLEELSLDRVLTQA* |
| Coding | >Hirsu2|3982 ATGTCGAAGCGGCTTCTTGCGCTTAGAGCCGTCATCGCCTACGTGTTCCTGGACTCCCGGGCCTGGGCCGCACCG CCAGATGTCACGTTCCAGTGCAGCAAGATGCCCGAGGTCTGCACCAACATGTGCTGGGCCGTGCGTTGCGCCAGT CCCGTCTTCCCACAGACGCTGAGCTGGGACGACCCGGACGAGACGACTCAGGGCCGGCGCCTGGCCTCGGCCGGC TGCCAGAAGAGCGGGAACAAATGCGGCGCCAAGAGCAAGGACGGCGTCGGCCACCGTGGCGGGAGGTTCACCTCC TGCGACGAGTATCCCTTCGTCTCGACCAAGGAGAGCACGCTGTTCTCCAACGGCCACCAGGTCTCTCGCTGCGTG CCGCGCTCGGAGAATGCGAGGCGGCGGCAGGCCCTCAAGGCCGTCTACGGCCGCTGGAAGAAGCAGGGCCTCGGG TCCCACGGCCTGGCCGTCAGCTTCGGTAGTCCGGCGGCCGAGGGTGTCAACTACTGCACCAATCAGCCCTGCAAG AACGACGGCTTCGAGGTGCAGGACAAGCAGATCAAGAAGCGCGGCCAGGACCCCGTCTTCAAGTTTTATGCGGCC ACCTCGGGCATCGTCCTCGGCTCTTTGGAACAAATCGAGACCCCGTCCAACTTCACTCGCCTTCTCGACAACGAC GAGGCCACGCCGGCCCACTGCGACTCTTGGGTTGAGAGGGTGGGGGGAGCTGATATCCGTGTCATCTCGGATGTC CTGCTCGAGGAGCTGTCTCTTGACCGTGTCCTCACCCAAGCCTAG |
| Transcript | >Hirsu2|3982 ATGTCGAAGCGGCTTCTTGCGCTTAGAGCCGTCATCGCCTACGTGTTCCTGGACTCCCGGGCCTGGGCCGCACCG CCAGATGTCACGTTCCAGTGCAGCAAGATGCCCGAGGTCTGCACCAACATGTGCTGGGCCGTGCGTTGCGCCAGT CCCGTCTTCCCACAGACGCTGAGCTGGGACGACCCGGACGAGACGACTCAGGGCCGGCGCCTGGCCTCGGCCGGC TGCCAGAAGAGCGGGAACAAATGCGGCGCCAAGAGCAAGGACGGCGTCGGCCACCGTGGCGGGAGGTTCACCTCC TGCGACGAGTATCCCTTCGTCTCGACCAAGGAGAGCACGCTGTTCTCCAACGGCCACCAGGTCTCTCGCTGCGTG CCGCGCTCGGAGAATGCGAGGCGGCGGCAGGCCCTCAAGGCCGTCTACGGCCGCTGGAAGAAGCAGGGCCTCGGG TCCCACGGCCTGGCCGTCAGCTTCGGTAGTCCGGCGGCCGAGGGTGTCAACTACTGCACCAATCAGCCCTGCAAG AACGACGGCTTCGAGGTGCAGGACAAGCAGATCAAGAAGCGCGGCCAGGACCCCGTCTTCAAGTTTTATGCGGCC ACCTCGGGCATCGTCCTCGGCTCTTTGGAACAAATCGAGACCCCGTCCAACTTCACTCGCCTTCTCGACAACGAC GAGGCCACGCCGGCCCACTGCGACTCTTGGGTTGAGAGGGTGGGGGGAGCTGATATCCGTGTCATCTCGGATGTC CTGCTCGAGGAGCTGTCTCTTGACCGTGTCCTCACCCAAGCCTAG |
| Gene | >Hirsu2|3982 ATGTCGAAGCGGCTTCTTGCGCTTAGAGCCGTCATCGCCTACGTGTTCCTGGACTCCCGGGCCTGGGCCGCACCG CCAGATGTCACGTTCCAGTGCAGCAAGATGCCCGAGGTCTGCACCAACATGTGCTGGGCCGTGCGTTGCGCCAGT CCCGTCTTCCCACAGACGCTGAGCTGGGACGACCCGGACGAGACGACTCAGGGCCGGCGCCTGGCCTCGGCCGGC TGCCAGAAGAGCGGGAACAAATGCGGCGCCAAGAGCAAGGACGGCGTCGGCCACCGTGGCGGGAGGTTCACCTCC TGCGACGAGTATCCCTTCGTCTCGACCAAGGAGAGCACGCTGTTCTCCAACGGCCACCAGGTCTCTCGCTGCGTG CCGCGCTCGGAGAATGCGAGGCGGCGGCAGGCCCTCAAGGCCGTCTACGGCCGCTGGAAGAAGCAGGGCCTCGGG TCCCACGGCCTGGCCGTCAGCTTCGGTAGTCCGGCGGCCGAGGGTGTCAACTACTGCACCAATCAGCCCTGCAAG AACGACGGCTTCGAGGTGCAGGACAAGCAGATCAAGAAGCGCGGCCAGGACCCCGTCTTCAAGTTTTATGCGGCC ACCTCGGGCATCGTCCTCGGCTCTTTGGAACAAATCGAGACCCCGTCCAACTTCACTCGCCTTCTCGACAACGAC GAGGCCACGCCGGCCCACTGCGACTCTTGGGTTGAGAGGGTGGGGGGAGCTGATATCCGTGTCATCTCGGATGTC CTGCTCGAGGAGCTGTCTCTTGACCGTGTCCTCACCCAAGCCTAG |