© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3963 |
| Gene name | |
| Location | Contig_2075:361..1141 |
| Strand | - |
| Gene length (bp) | 780 |
| Transcript length (bp) | 513 |
| Coding sequence length (bp) | 513 |
| Protein length (aa) | 171 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02064 | MAS20 | MAS20 protein import receptor | 2.7E-40 | 14 | 143 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P35848|TOM20_NEUCR | Mitochondrial import receptor subunit tom20 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=tom20 PE=3 SV=1 | 20 | 170 | 1.0E-47 |
| sp|O14225|TOM20_SCHPO | Mitochondrial import receptor subunit tom20 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tom20 PE=3 SV=1 | 15 | 150 | 2.0E-24 |
| sp|P35180|TOM20_YEAST | Mitochondrial import receptor subunit TOM20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TOM20 PE=1 SV=1 | 8 | 147 | 1.0E-20 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005742 | mitochondrial outer membrane translocase complex | Yes |
| GO:0006886 | intracellular protein transport | Yes |
| GO:0006605 | protein targeting | Yes |
| GO:0009987 | cellular process | No |
| GO:0098796 | membrane protein complex | No |
| GO:0051179 | localization | No |
| GO:0051234 | establishment of localization | No |
| GO:0008150 | biological_process | No |
| GO:0071702 | organic substance transport | No |
| GO:0071705 | nitrogen compound transport | No |
| GO:0070727 | cellular macromolecule localization | No |
| GO:0051641 | cellular localization | No |
| GO:0045184 | establishment of protein localization | No |
| GO:0098798 | mitochondrial protein-containing complex | No |
| GO:0051649 | establishment of localization in cell | No |
| GO:0032991 | protein-containing complex | No |
| GO:0008104 | protein localization | No |
| GO:0033036 | macromolecule localization | No |
| GO:0046907 | intracellular transport | No |
| GO:0006810 | transport | No |
| GO:0098799 | outer mitochondrial membrane protein complex | No |
| GO:0005575 | cellular_component | No |
| GO:0015031 | protein transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 4 | 26 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3963 MVQTSTLVTASVAGVTAAALAYAAYFDYRRRSQADFRRDLRRSERRQARAEKEEAEASKRRRRDAIKIKVDEAKA EGFPTGVEEREAFFNEQVNTGEILSSDPAMAVESALAFYKGLKVYPAPGDLIKIYDSTVPKPILDILAEMIAYDS SLDIRAAGIDLGEIPNVGLD* |
| Coding | >Hirsu2|3963 ATGGTGCAGACGTCGACCCTGGTGACGGCATCGGTAGCCGGCGTCACGGCCGCAGCACTCGCGTACGCCGCCTAC TTCGACTACCGCCGCCGCTCCCAGGCCGACTTCCGCCGCGACCTGCGGAGAAGCGAGCGCCGCCAGGCCCGGGCC GAGAAGGAAGAGGCCGAGGCGTCGAAGCGGCGCCGGCGGGACGCCATCAAGATCAAGGTCGACGAGGCCAAGGCC GAGGGCTTCCCGACCGGCGTTGAGGAGCGCGAGGCCTTCTTCAACGAGCAGGTCAACACCGGCGAGATACTCAGC TCCGATCCTGCCATGGCCGTCGAGTCGGCCCTTGCCTTCTACAAGGGCTTGAAGGTCTATCCGGCCCCGGGCGAT CTCATCAAGATTTACGACAGCACTGTGCCCAAGCCCATATTAGACATTCTGGCCGAGATGATCGCGTATGACTCC AGCCTCGACATCCGCGCCGCGGGCATCGATCTGGGCGAGATACCCAACGTCGGCCTCGACTAG |
| Transcript | >Hirsu2|3963 ATGGTGCAGACGTCGACCCTGGTGACGGCATCGGTAGCCGGCGTCACGGCCGCAGCACTCGCGTACGCCGCCTAC TTCGACTACCGCCGCCGCTCCCAGGCCGACTTCCGCCGCGACCTGCGGAGAAGCGAGCGCCGCCAGGCCCGGGCC GAGAAGGAAGAGGCCGAGGCGTCGAAGCGGCGCCGGCGGGACGCCATCAAGATCAAGGTCGACGAGGCCAAGGCC GAGGGCTTCCCGACCGGCGTTGAGGAGCGCGAGGCCTTCTTCAACGAGCAGGTCAACACCGGCGAGATACTCAGC TCCGATCCTGCCATGGCCGTCGAGTCGGCCCTTGCCTTCTACAAGGGCTTGAAGGTCTATCCGGCCCCGGGCGAT CTCATCAAGATTTACGACAGCACTGTGCCCAAGCCCATATTAGACATTCTGGCCGAGATGATCGCGTATGACTCC AGCCTCGACATCCGCGCCGCGGGCATCGATCTGGGCGAGATACCCAACGTCGGCCTCGACTAG |
| Gene | >Hirsu2|3963 ATGGTGCAGACGTCGACCCTGGTGACGGCATCGGTAGCCGGCGTCACGGCCGCAGCACTCGGTAAGCCCGACGCA CGCTCATACAGACACAGGCGTCGCACGCGCGCGCGCGCGGCTGGCCGTCTCGTTCGCCTTGCGCTCGCTGACACA TGGATCGGGGGCCGCGGGGAGGAAAGCGTACGCCGCCTACTTCGACTACCGCCGCCGCTCCCAGGCCGACTTCCG CCGCGACCTGCGGAGAAGCGAGCGCCGCCAGGCCCGGGCCGAGAAGGAAGAGGCCGAGGCGTCGAAGCGGCGCCG GCGGGACGCCATCAAGATCAAGGTCGACGAGGCCAAGGCCGAGGGCTTCCCGACCGGCGTTGAGGAGCGCGAGGC CTTCTTCAACGAGCAGGTCAACACCGGCGAGATACTCAGCTCCGATCGTACGACCCCCGCCCTGTTTGTCTTTGG TTTGGCGCGCTGGCCACGGTGGCGGGCTCGAGCTGACGATGCAACTCTGCAGCTGCCATGGCCGTCGAGTCGGCC CTTGCCTTCTACAAGGGCTTGAAGGTCTATCCGGCCCCGGGCGATCTCATCAAGATTTACGACAGCACTGTGCCC AAGGTAGAGTCTTTCTCTTCCCCCAATTCCGTTCCTCGCTGCGGTCGACGCGTCGCTGACAGTTCCCGTGTCTAG CCCATATTAGACATTCTGGCCGAGATGATCGCGTATGACTCCAGCCTCGACATCCGCGCCGCGGGCATCGATCTG GGCGAGATACCCAACGTCGGCCTCGACTAG |