© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3951 |
| Gene name | |
| Location | Contig_207:8941..11236 |
| Strand | + |
| Gene length (bp) | 2295 |
| Transcript length (bp) | 2295 |
| Coding sequence length (bp) | 2295 |
| Protein length (aa) | 765 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03152 | UFD1 | Ubiquitin fusion degradation protein UFD1 | 4.2E-14 | 154 | 239 |
| PF16558 | AZUL | Amino-terminal Zinc-binding domain of ubiquitin ligase E3A | 8.3E-07 | 651 | 691 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q19584|UFD1_CAEEL | Ubiquitin fusion degradation protein 1 homolog OS=Caenorhabditis elegans GN=ufd-1 PE=3 SV=1 | 52 | 239 | 3.0E-11 |
| sp|P53044|UFD1_YEAST | Ubiquitin fusion degradation protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UFD1 PE=1 SV=1 | 83 | 248 | 5.0E-09 |
| sp|Q58D05|TRAD1_BOVIN | TRAF-type zinc finger domain-containing protein 1 OS=Bos taurus GN=TRAFD1 PE=2 SV=1 | 422 | 576 | 3.0E-08 |
| sp|O14545|TRAD1_HUMAN | TRAF-type zinc finger domain-containing protein 1 OS=Homo sapiens GN=TRAFD1 PE=1 SV=1 | 422 | 576 | 2.0E-06 |
| sp|Q4R970|TRAD1_MACFA | TRAF-type zinc finger domain-containing protein 1 OS=Macaca fascicularis GN=TRAFD1 PE=2 SV=1 | 422 | 576 | 4.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006511 | ubiquitin-dependent protein catabolic process | Yes |
| GO:0019941 | modification-dependent protein catabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0006508 | proteolysis | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0009056 | catabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0008152 | metabolic process | No |
| GO:0044248 | cellular catabolic process | No |
| GO:1901575 | organic substance catabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0044265 | cellular macromolecule catabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0009057 | macromolecule catabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0051603 | proteolysis involved in protein catabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043632 | modification-dependent macromolecule catabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3951 MDDLPPLRWSGTYAAPPPAFGASRPLPGDKIVLPQSALEQLLAAAHSRQPPGTSFTSFDPQDRYTSNFYGGGSQQ ESSQQLPHPLTFRLVNPINSKSVYAGIREFSAPEGTLGLSPFLSETLGIDSIEKLPEDEASPGRPHNATDDGATT PFRQIAVLAQQLPKGTYVRLRPLEAGYNPDDWKSLLERHLRENFTCLTKDAVLSVPGVQGETFKFLVDKFAPEGD GICVVDTDLEVDIEALNEEQARETMRQIMSKAQSGLTNGSSEGGELDIWKDVQGQVSPGDYVDYNLPSWNRSQPL AITLSNIEREDSLDVFVNPKSSQHRTLPRDSTHVFGNFGPADQGSKTICIAPTNAELDGAEGILVSVRAYRSKRA PEPSSDPVSYTIRVKAASFSGHANGRRDGAEDGSGEGVGAGPNDEQCKNCFQYVPKRTVVLHENFCRRNNVVCAR CKSVFKKGSPDWESHWHCEHDDAHGNTTLGKAKHDEVFHTDRQCPSCEFSTNSLPDLSRHRTTVCPGKLILCRFC HLEVPQEGDPFNPSPEVILSGMTAHELADGARTTECHLCDKIVRLRDMETHLKHHELDKGYRSKPAICRNINCGR TQHGVGPKGRIGAGTAQGQGPGNDIGLCSLCFGPLYVSMHDPEGKALRRRIERRYLGQMMTGCGKPHCANEWCKT GRANGGLDPKASSAQAVLPLVKPLLENIPRHDEPMFFCVDEAGQKSRAVAEMLAAEKGWDLEWCVAAAEAEKSSA DRMRDWLQAWAPRK* |
| Coding | >Hirsu2|3951 ATGGATGACCTTCCGCCTCTTCGTTGGTCCGGCACATATGCCGCCCCTCCTCCCGCCTTCGGCGCTTCGAGGCCC CTCCCGGGTGACAAGATCGTCCTTCCTCAGTCGGCTCTCGAGCAGCTTCTCGCCGCCGCACACTCCCGCCAACCA CCTGGCACCTCCTTCACCTCATTCGACCCTCAGGATAGATACACTTCGAACTTCTATGGAGGCGGCTCGCAACAG GAAAGCAGCCAGCAGCTTCCCCACCCCCTCACGTTTCGTCTAGTGAATCCCATCAACAGCAAATCCGTATACGCT GGTATCCGGGAGTTCTCCGCCCCGGAAGGGACGTTGGGCCTCAGCCCCTTTCTGTCGGAAACTCTGGGTATCGAT TCGATAGAAAAGCTGCCTGAGGATGAAGCGAGTCCCGGTCGCCCTCACAATGCCACCGACGATGGTGCAACCACT CCATTCCGACAGATCGCAGTCCTCGCGCAACAGCTACCCAAGGGAACGTACGTCCGTTTACGGCCCCTCGAGGCG GGCTACAATCCAGACGACTGGAAATCCCTGTTGGAGCGTCATCTGAGAGAAAACTTCACTTGCCTCACCAAAGAT GCCGTCCTCTCCGTCCCAGGAGTTCAGGGTGAAACGTTCAAGTTCTTGGTCGATAAATTTGCGCCCGAGGGTGAC GGCATATGTGTTGTCGACACCGACCTCGAGGTGGACATCGAGGCTCTCAACGAAGAACAGGCCAGGGAGACGATG CGCCAGATCATGTCAAAGGCGCAGTCGGGACTCACGAACGGAAGCTCCGAGGGCGGCGAGCTGGACATATGGAAG GACGTCCAAGGGCAGGTCTCGCCCGGGGACTACGTCGACTACAATCTGCCGTCGTGGAATCGATCGCAGCCTCTA GCCATCACGCTCAGCAATATCGAGCGAGAGGACAGCCTGGACGTCTTTGTTAATCCCAAGTCATCTCAGCATCGG ACCTTGCCTCGCGACTCGACGCATGTCTTTGGAAACTTTGGCCCCGCCGATCAAGGCTCCAAGACGATATGTATC GCTCCCACCAACGCTGAGCTGGATGGCGCAGAAGGCATCCTTGTTTCGGTTCGCGCGTACCGAAGCAAGAGAGCA CCGGAGCCGTCGTCGGACCCGGTCTCGTACACGATCCGGGTCAAAGCGGCGTCCTTTTCCGGTCATGCCAACGGT AGACGGGACGGGGCCGAGGACGGTTCGGGTGAGGGTGTGGGCGCAGGCCCAAATGACGAGCAATGCAAGAACTGC TTCCAGTATGTGCCCAAGCGGACGGTTGTTCTACACGAAAACTTTTGCCGCAGAAATAACGTCGTGTGCGCGCGG TGTAAGTCTGTCTTCAAAAAGGGGTCTCCCGATTGGGAATCGCATTGGCACTGCGAACACGACGATGCCCACGGA AACACAACATTGGGCAAGGCCAAGCACGATGAAGTTTTTCACACAGACCGCCAGTGTCCCTCGTGCGAATTTTCC ACAAACTCGCTACCGGACCTCTCGAGACATCGAACGACGGTCTGCCCCGGCAAGCTGATCTTGTGTCGATTTTGT CACCTAGAAGTTCCTCAAGAAGGAGACCCATTCAACCCGTCTCCCGAAGTCATACTGTCTGGGATGACGGCGCAC GAACTTGCGGACGGGGCACGCACCACGGAGTGCCATCTTTGCGATAAGATCGTCCGTCTCCGAGACATGGAGACC CATCTCAAGCATCACGAGCTGGACAAGGGCTACCGCTCGAAGCCCGCGATCTGTCGCAACATCAACTGCGGCAGG ACTCAGCATGGTGTGGGGCCCAAAGGCCGTATCGGCGCGGGGACGGCTCAAGGCCAGGGGCCGGGCAACGACATC GGACTCTGCTCGCTGTGCTTCGGGCCCCTTTACGTGAGCATGCACGACCCCGAAGGCAAGGCGCTTCGGAGGAGG ATCGAGAGACGGTATCTCGGTCAGATGATGACGGGGTGCGGAAAGCCTCACTGCGCCAATGAATGGTGCAAGACA GGCAGAGCCAACGGCGGTCTCGACCCCAAGGCATCGTCTGCCCAAGCAGTTTTGCCCCTGGTGAAACCCCTACTC GAAAATATCCCGAGACATGACGAACCGATGTTCTTCTGCGTCGACGAGGCCGGGCAGAAGAGCCGGGCGGTGGCC GAGATGCTCGCTGCCGAGAAGGGATGGGACCTGGAGTGGTGCGTCGCGGCCGCCGAAGCGGAGAAGAGCAGTGCG GACAGGATGAGAGACTGGCTGCAGGCATGGGCTCCAAGGAAATAG |
| Transcript | >Hirsu2|3951 ATGGATGACCTTCCGCCTCTTCGTTGGTCCGGCACATATGCCGCCCCTCCTCCCGCCTTCGGCGCTTCGAGGCCC CTCCCGGGTGACAAGATCGTCCTTCCTCAGTCGGCTCTCGAGCAGCTTCTCGCCGCCGCACACTCCCGCCAACCA CCTGGCACCTCCTTCACCTCATTCGACCCTCAGGATAGATACACTTCGAACTTCTATGGAGGCGGCTCGCAACAG GAAAGCAGCCAGCAGCTTCCCCACCCCCTCACGTTTCGTCTAGTGAATCCCATCAACAGCAAATCCGTATACGCT GGTATCCGGGAGTTCTCCGCCCCGGAAGGGACGTTGGGCCTCAGCCCCTTTCTGTCGGAAACTCTGGGTATCGAT TCGATAGAAAAGCTGCCTGAGGATGAAGCGAGTCCCGGTCGCCCTCACAATGCCACCGACGATGGTGCAACCACT CCATTCCGACAGATCGCAGTCCTCGCGCAACAGCTACCCAAGGGAACGTACGTCCGTTTACGGCCCCTCGAGGCG GGCTACAATCCAGACGACTGGAAATCCCTGTTGGAGCGTCATCTGAGAGAAAACTTCACTTGCCTCACCAAAGAT GCCGTCCTCTCCGTCCCAGGAGTTCAGGGTGAAACGTTCAAGTTCTTGGTCGATAAATTTGCGCCCGAGGGTGAC GGCATATGTGTTGTCGACACCGACCTCGAGGTGGACATCGAGGCTCTCAACGAAGAACAGGCCAGGGAGACGATG CGCCAGATCATGTCAAAGGCGCAGTCGGGACTCACGAACGGAAGCTCCGAGGGCGGCGAGCTGGACATATGGAAG GACGTCCAAGGGCAGGTCTCGCCCGGGGACTACGTCGACTACAATCTGCCGTCGTGGAATCGATCGCAGCCTCTA GCCATCACGCTCAGCAATATCGAGCGAGAGGACAGCCTGGACGTCTTTGTTAATCCCAAGTCATCTCAGCATCGG ACCTTGCCTCGCGACTCGACGCATGTCTTTGGAAACTTTGGCCCCGCCGATCAAGGCTCCAAGACGATATGTATC GCTCCCACCAACGCTGAGCTGGATGGCGCAGAAGGCATCCTTGTTTCGGTTCGCGCGTACCGAAGCAAGAGAGCA CCGGAGCCGTCGTCGGACCCGGTCTCGTACACGATCCGGGTCAAAGCGGCGTCCTTTTCCGGTCATGCCAACGGT AGACGGGACGGGGCCGAGGACGGTTCGGGTGAGGGTGTGGGCGCAGGCCCAAATGACGAGCAATGCAAGAACTGC TTCCAGTATGTGCCCAAGCGGACGGTTGTTCTACACGAAAACTTTTGCCGCAGAAATAACGTCGTGTGCGCGCGG TGTAAGTCTGTCTTCAAAAAGGGGTCTCCCGATTGGGAATCGCATTGGCACTGCGAACACGACGATGCCCACGGA AACACAACATTGGGCAAGGCCAAGCACGATGAAGTTTTTCACACAGACCGCCAGTGTCCCTCGTGCGAATTTTCC ACAAACTCGCTACCGGACCTCTCGAGACATCGAACGACGGTCTGCCCCGGCAAGCTGATCTTGTGTCGATTTTGT CACCTAGAAGTTCCTCAAGAAGGAGACCCATTCAACCCGTCTCCCGAAGTCATACTGTCTGGGATGACGGCGCAC GAACTTGCGGACGGGGCACGCACCACGGAGTGCCATCTTTGCGATAAGATCGTCCGTCTCCGAGACATGGAGACC CATCTCAAGCATCACGAGCTGGACAAGGGCTACCGCTCGAAGCCCGCGATCTGTCGCAACATCAACTGCGGCAGG ACTCAGCATGGTGTGGGGCCCAAAGGCCGTATCGGCGCGGGGACGGCTCAAGGCCAGGGGCCGGGCAACGACATC GGACTCTGCTCGCTGTGCTTCGGGCCCCTTTACGTGAGCATGCACGACCCCGAAGGCAAGGCGCTTCGGAGGAGG ATCGAGAGACGGTATCTCGGTCAGATGATGACGGGGTGCGGAAAGCCTCACTGCGCCAATGAATGGTGCAAGACA GGCAGAGCCAACGGCGGTCTCGACCCCAAGGCATCGTCTGCCCAAGCAGTTTTGCCCCTGGTGAAACCCCTACTC GAAAATATCCCGAGACATGACGAACCGATGTTCTTCTGCGTCGACGAGGCCGGGCAGAAGAGCCGGGCGGTGGCC GAGATGCTCGCTGCCGAGAAGGGATGGGACCTGGAGTGGTGCGTCGCGGCCGCCGAAGCGGAGAAGAGCAGTGCG GACAGGATGAGAGACTGGCTGCAGGCATGGGCTCCAAGGAAATAG |
| Gene | >Hirsu2|3951 ATGGATGACCTTCCGCCTCTTCGTTGGTCCGGCACATATGCCGCCCCTCCTCCCGCCTTCGGCGCTTCGAGGCCC CTCCCGGGTGACAAGATCGTCCTTCCTCAGTCGGCTCTCGAGCAGCTTCTCGCCGCCGCACACTCCCGCCAACCA CCTGGCACCTCCTTCACCTCATTCGACCCTCAGGATAGATACACTTCGAACTTCTATGGAGGCGGCTCGCAACAG GAAAGCAGCCAGCAGCTTCCCCACCCCCTCACGTTTCGTCTAGTGAATCCCATCAACAGCAAATCCGTATACGCT GGTATCCGGGAGTTCTCCGCCCCGGAAGGGACGTTGGGCCTCAGCCCCTTTCTGTCGGAAACTCTGGGTATCGAT TCGATAGAAAAGCTGCCTGAGGATGAAGCGAGTCCCGGTCGCCCTCACAATGCCACCGACGATGGTGCAACCACT CCATTCCGACAGATCGCAGTCCTCGCGCAACAGCTACCCAAGGGAACGTACGTCCGTTTACGGCCCCTCGAGGCG GGCTACAATCCAGACGACTGGAAATCCCTGTTGGAGCGTCATCTGAGAGAAAACTTCACTTGCCTCACCAAAGAT GCCGTCCTCTCCGTCCCAGGAGTTCAGGGTGAAACGTTCAAGTTCTTGGTCGATAAATTTGCGCCCGAGGGTGAC GGCATATGTGTTGTCGACACCGACCTCGAGGTGGACATCGAGGCTCTCAACGAAGAACAGGCCAGGGAGACGATG CGCCAGATCATGTCAAAGGCGCAGTCGGGACTCACGAACGGAAGCTCCGAGGGCGGCGAGCTGGACATATGGAAG GACGTCCAAGGGCAGGTCTCGCCCGGGGACTACGTCGACTACAATCTGCCGTCGTGGAATCGATCGCAGCCTCTA GCCATCACGCTCAGCAATATCGAGCGAGAGGACAGCCTGGACGTCTTTGTTAATCCCAAGTCATCTCAGCATCGG ACCTTGCCTCGCGACTCGACGCATGTCTTTGGAAACTTTGGCCCCGCCGATCAAGGCTCCAAGACGATATGTATC GCTCCCACCAACGCTGAGCTGGATGGCGCAGAAGGCATCCTTGTTTCGGTTCGCGCGTACCGAAGCAAGAGAGCA CCGGAGCCGTCGTCGGACCCGGTCTCGTACACGATCCGGGTCAAAGCGGCGTCCTTTTCCGGTCATGCCAACGGT AGACGGGACGGGGCCGAGGACGGTTCGGGTGAGGGTGTGGGCGCAGGCCCAAATGACGAGCAATGCAAGAACTGC TTCCAGTATGTGCCCAAGCGGACGGTTGTTCTACACGAAAACTTTTGCCGCAGAAATAACGTCGTGTGCGCGCGG TGTAAGTCTGTCTTCAAAAAGGGGTCTCCCGATTGGGAATCGCATTGGCACTGCGAACACGACGATGCCCACGGA AACACAACATTGGGCAAGGCCAAGCACGATGAAGTTTTTCACACAGACCGCCAGTGTCCCTCGTGCGAATTTTCC ACAAACTCGCTACCGGACCTCTCGAGACATCGAACGACGGTCTGCCCCGGCAAGCTGATCTTGTGTCGATTTTGT CACCTAGAAGTTCCTCAAGAAGGAGACCCATTCAACCCGTCTCCCGAAGTCATACTGTCTGGGATGACGGCGCAC GAACTTGCGGACGGGGCACGCACCACGGAGTGCCATCTTTGCGATAAGATCGTCCGTCTCCGAGACATGGAGACC CATCTCAAGCATCACGAGCTGGACAAGGGCTACCGCTCGAAGCCCGCGATCTGTCGCAACATCAACTGCGGCAGG ACTCAGCATGGTGTGGGGCCCAAAGGCCGTATCGGCGCGGGGACGGCTCAAGGCCAGGGGCCGGGCAACGACATC GGACTCTGCTCGCTGTGCTTCGGGCCCCTTTACGTGAGCATGCACGACCCCGAAGGCAAGGCGCTTCGGAGGAGG ATCGAGAGACGGTATCTCGGTCAGATGATGACGGGGTGCGGAAAGCCTCACTGCGCCAATGAATGGTGCAAGACA GGCAGAGCCAACGGCGGTCTCGACCCCAAGGCATCGTCTGCCCAAGCAGTTTTGCCCCTGGTGAAACCCCTACTC GAAAATATCCCGAGACATGACGAACCGATGTTCTTCTGCGTCGACGAGGCCGGGCAGAAGAGCCGGGCGGTGGCC GAGATGCTCGCTGCCGAGAAGGGATGGGACCTGGAGTGGTGCGTCGCGGCCGCCGAAGCGGAGAAGAGCAGTGCG GACAGGATGAGAGACTGGCTGCAGGCATGGGCTCCAAGGAAATAG |