Fungal Genomics

at Utrecht University

General Properties

Protein ID	Hirsu2\|3946
Gene name
Location	Contig_2069:3321..3786
Strand	-
Gene length (bp)	465
Transcript length (bp)	465
Coding sequence length (bp)	465
Protein length (aa)	155

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00153	Mito_carr	Mitochondrial carrier protein	1.8E-13	41	147

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9CA93\|BAC2_ARATH	Mitochondrial arginine transporter BAC2 OS=Arabidopsis thaliana GN=BAC2 PE=1 SV=1	39	141	8.0E-07

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 14	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	38	57	19
2	116	138	22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2\|3946 MVAGHMPGICLTFGLYETFKAALLRRRGAQPADARQQLRASALGAFAAGGLSSWFFVPIDVVKTRMRLSAGDRIE TPPSSGPAATGTRHSPLRSSPPDPNGAIGIARDVLRREGVAGLFRGSILTVIASALTSGLYIGCYEAGKLYLGEV RESG*
Coding	>Hirsu2\|3946 ATGGTGGCCGGCCACATGCCCGGCATCTGCCTGACCTTTGGCCTCTACGAGACCTTCAAGGCGGCCCTGCTGCGG AGGAGGGGCGCGCAGCCGGCCGATGCGCGGCAGCAGCTGAGGGCCAGCGCGCTGGGCGCCTTTGCCGCCGGCGGC CTCTCCTCCTGGTTCTTCGTCCCCATCGACGTGGTGAAGACGAGGATGAGGCTCTCGGCCGGCGACCGGATCGAG ACGCCGCCGAGCTCTGGCCCCGCGGCCACGGGGACGAGGCACTCGCCGCTTCGATCCTCGCCCCCGGATCCCAAC GGCGCCATCGGCATCGCGAGAGACGTGCTCCGCAGGGAGGGGGTGGCCGGTCTGTTCAGGGGGTCTATACTGACT GTGATTGCTTCGGCCCTTACCAGCGGGCTGTACATAGGCTGTTACGAGGCCGGCAAGCTTTATCTCGGCGAGGTC AGAGAATCCGGGTGA
Transcript	>Hirsu2\|3946 ATGGTGGCCGGCCACATGCCCGGCATCTGCCTGACCTTTGGCCTCTACGAGACCTTCAAGGCGGCCCTGCTGCGG AGGAGGGGCGCGCAGCCGGCCGATGCGCGGCAGCAGCTGAGGGCCAGCGCGCTGGGCGCCTTTGCCGCCGGCGGC CTCTCCTCCTGGTTCTTCGTCCCCATCGACGTGGTGAAGACGAGGATGAGGCTCTCGGCCGGCGACCGGATCGAG ACGCCGCCGAGCTCTGGCCCCGCGGCCACGGGGACGAGGCACTCGCCGCTTCGATCCTCGCCCCCGGATCCCAAC GGCGCCATCGGCATCGCGAGAGACGTGCTCCGCAGGGAGGGGGTGGCCGGTCTGTTCAGGGGGTCTATACTGACT GTGATTGCTTCGGCCCTTACCAGCGGGCTGTACATAGGCTGTTACGAGGCCGGCAAGCTTTATCTCGGCGAGGTC AGAGAATCCGGGTGA
Gene	>Hirsu2\|3946 ATGGTGGCCGGCCACATGCCCGGCATCTGCCTGACCTTTGGCCTCTACGAGACCTTCAAGGCGGCCCTGCTGCGG AGGAGGGGCGCGCAGCCGGCCGATGCGCGGCAGCAGCTGAGGGCCAGCGCGCTGGGCGCCTTTGCCGCCGGCGGC CTCTCCTCCTGGTTCTTCGTCCCCATCGACGTGGTGAAGACGAGGATGAGGCTCTCGGCCGGCGACCGGATCGAG ACGCCGCCGAGCTCTGGCCCCGCGGCCACGGGGACGAGGCACTCGCCGCTTCGATCCTCGCCCCCGGATCCCAAC GGCGCCATCGGCATCGCGAGAGACGTGCTCCGCAGGGAGGGGGTGGCCGGTCTGTTCAGGGGGTCTATACTGACT GTGATTGCTTCGGCCCTTACCAGCGGGCTGTACATAGGCTGTTACGAGGCCGGCAAGCTTTATCTCGGCGAGGTC AGAGAATCCGGGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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