© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3940 |
| Gene name | |
| Location | Contig_2064:211..1087 |
| Strand | + |
| Gene length (bp) | 876 |
| Transcript length (bp) | 432 |
| Coding sequence length (bp) | 432 |
| Protein length (aa) | 144 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00319 | SRF-TF | SRF-type transcription factor (DNA-binding and dimerisation domain) | 3.0E-09 | 1 | 29 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5AFP3|MCM1_CANAL | Transcription factor of morphogenesis MCM1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=MCM1 PE=1 SV=1 | 1 | 76 | 9.0E-31 |
| sp|P11746|MCM1_YEAST | Pheromone receptor transcription factor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MCM1 PE=1 SV=2 | 1 | 54 | 4.0E-25 |
| sp|Q54RY6|SRFB_DICDI | Serum response factor homolog B OS=Dictyostelium discoideum GN=srfB PE=3 SV=1 | 1 | 62 | 3.0E-22 |
| sp|Q54TY7|SRFA_DICDI | Serum response factor homolog A OS=Dictyostelium discoideum GN=srfA PE=1 SV=1 | 1 | 55 | 6.0E-22 |
| sp|Q90718|SRF_CHICK | Serum response factor (Fragment) OS=Gallus gallus GN=SRF PE=2 SV=1 | 1 | 105 | 1.0E-20 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5AFP3|MCM1_CANAL | Transcription factor of morphogenesis MCM1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=MCM1 PE=1 SV=1 | 1 | 76 | 9.0E-31 |
| sp|P11746|MCM1_YEAST | Pheromone receptor transcription factor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MCM1 PE=1 SV=2 | 1 | 54 | 4.0E-25 |
| sp|Q54RY6|SRFB_DICDI | Serum response factor homolog B OS=Dictyostelium discoideum GN=srfB PE=3 SV=1 | 1 | 62 | 3.0E-22 |
| sp|Q54TY7|SRFA_DICDI | Serum response factor homolog A OS=Dictyostelium discoideum GN=srfA PE=1 SV=1 | 1 | 55 | 6.0E-22 |
| sp|Q90718|SRF_CHICK | Serum response factor (Fragment) OS=Gallus gallus GN=SRF PE=2 SV=1 | 1 | 105 | 1.0E-20 |
| sp|P23790|SRF_XENLA | Serum response factor OS=Xenopus laevis GN=srf PE=2 SV=1 | 1 | 105 | 1.0E-20 |
| sp|P11831|SRF_HUMAN | Serum response factor OS=Homo sapiens GN=SRF PE=1 SV=1 | 1 | 105 | 2.0E-20 |
| sp|Q24535|SRF_DROME | Serum response factor homolog OS=Drosophila melanogaster GN=bs PE=1 SV=2 | 1 | 56 | 2.0E-20 |
| sp|P07249|ARGR1_YEAST | Arginine metabolism regulation protein I OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARG80 PE=1 SV=2 | 1 | 55 | 3.0E-20 |
| sp|Q9JM73|SRF_MOUSE | Serum response factor OS=Mus musculus GN=Srf PE=1 SV=1 | 1 | 105 | 8.0E-20 |
| sp|P78926|PMAP1_SCHPO | Pheromone receptor transcription activator OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=map1 PE=3 SV=1 | 1 | 53 | 8.0E-12 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046983 | protein dimerization activity | Yes |
| GO:0003677 | DNA binding | Yes |
| GO:0005515 | protein binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| SRF-type |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3940 MKKAYELSVLTGTQVLLLVVSETGLVYTFTTPKLQPLVTKAEGKNLIQACLNAPEPAPGNENGVDSGDQVESPEE SAGQHIPPQASRPGMPQNPHMPGNYMPNMPMDPQHALAYQNYVQQRSQGYGSGMPPQAGMPPSNHHQP* |
| Coding | >Hirsu2|3940 ATGAAGAAGGCCTACGAGCTCTCCGTCTTAACCGGCACCCAAGTCCTCCTCCTCGTCGTCTCCGAAACGGGTCTC GTCTACACCTTCACCACGCCCAAGCTCCAACCGCTCGTCACTAAGGCTGAGGGCAAGAACTTGATTCAGGCGTGT CTGAACGCGCCGGAACCCGCGCCCGGCAACGAAAACGGCGTCGACAGCGGCGACCAGGTCGAGTCCCCCGAAGAG TCGGCCGGCCAGCACATACCCCCCCAGGCCAGCCGCCCGGGGATGCCTCAAAATCCGCACATGCCCGGCAACTAC ATGCCCAACATGCCGATGGACCCCCAACACGCGCTCGCCTACCAGAACTACGTGCAGCAGCGCAGTCAAGGATAC GGCTCGGGCATGCCGCCCCAGGCGGGCATGCCGCCGAGTAACCATCACCAGCCATGA |
| Transcript | >Hirsu2|3940 ATGAAGAAGGCCTACGAGCTCTCCGTCTTAACCGGCACCCAAGTCCTCCTCCTCGTCGTCTCCGAAACGGGTCTC GTCTACACCTTCACCACGCCCAAGCTCCAACCGCTCGTCACTAAGGCTGAGGGCAAGAACTTGATTCAGGCGTGT CTGAACGCGCCGGAACCCGCGCCCGGCAACGAAAACGGCGTCGACAGCGGCGACCAGGTCGAGTCCCCCGAAGAG TCGGCCGGCCAGCACATACCCCCCCAGGCCAGCCGCCCGGGGATGCCTCAAAATCCGCACATGCCCGGCAACTAC ATGCCCAACATGCCGATGGACCCCCAACACGCGCTCGCCTACCAGAACTACGTGCAGCAGCGCAGTCAAGGATAC GGCTCGGGCATGCCGCCCCAGGCGGGCATGCCGCCGAGTAACCATCACCAGCCATGA |
| Gene | >Hirsu2|3940 ATGAAGAAGGTTCGTCCATGCCTCCGACGCGCCCCCTCCCTCGGCACACGCTCTGCTCGTCTGTCCTCGCCGCGC CTGGCGCGACCACGGCTGCGGCAAACGGCTGCGACCCCAGCGGCACCGCCCGTCCGGCCCGCGTCCCTCTCCGCT CCGCCGTCGCCCGCCGCCCGTACTGACTCGCCCTCTTCCTCCGCCAGGCCTACGAGCTCTCCGTCTTAACCGGCA CCCAAGTCCTCCTCCTCGTCGTCTCCGAAACGGGTCTCGTCTACACCTTCACCACGCCCAAGCTCCAACCGCTCG TCACTAAGGCTGAGGGCAAGAACTTGATTCAGGTACGCGACCCGTGCTCGCGCGTCGGCCTCATGCCACCTGGCT CCGACGCCCGCGCCCCCCTTCCGCCCTCCCCTTTGAACGAACGCGTATCACGAAAACCCATGCTACCCCCGCCCC CTTTGATCCTCTTGTCCCTCGTCCCGCCTTCTCCCACCGCCCTGTCTAGGAACCATACCGTCCTGTGGCTTCGGC TTGCTCCCCCAGCTCGCTCGCCCTGTATCAGTTCTGAACGCTGACATGTCCCGCTCGCCACAGGCGTGTCTGAAC GCGCCGGAACCCGCGCCCGGCAACGAAAACGGCGTCGACAGCGGCGACCAGGTCGAGTCCCCCGAAGAGTCGGCC GGCCAGCACATACCCCCCCAGGCCAGCCGCCCGGGGATGCCTCAAAATCCGCACATGCCCGGCAACTACATGCCC AACATGCCGATGGACCCCCAACACGCGCTCGCCTACCAGAACTACGTGCAGCAGCGCAGTCAAGGATACGGCTCG GGCATGCCGCCCCAGGCGGGCATGCCGCCGAGTAACCATCACCAGCCATGA |