Fungal Genomics

at Utrecht University

General Properties

Protein ID	Hirsu2\|3936
Gene name
Location	Contig_2061:1817..2753
Strand	+
Gene length (bp)	936
Transcript length (bp)	936
Coding sequence length (bp)	936
Protein length (aa)	312

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF10000	ACT_3	ACT domain	3.1E-20	144	213
PF13551	HTH_29	Winged helix-turn helix	1.3E-09	28	79
PF13384	HTH_23	Homeodomain-like domain	1.2E-06	26	66
PF13518	HTH_28	Helix-turn-helix domain	1.2E-06	28	78

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 46	0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class (based on PFAM domains)
Helix-turn-helix
Homeodomain-like HTH

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2\|3936 MASTNLDAFGAIITSERKPKGEITPEARAAIIAAVQAGERKSVIAARFRISPAAVDRTLQRFEKTGQLVSRPRSG RPKTKPVAEPPSEPSARVVGPVRNVRSPPGPAMASAAGNVNSNRKQQQNQHQQNQHQQNQHQLLLAADPGERSLA TLLATLTTTLHPTTYVFTSLSPVSPLPPLAEIQLLFREPEGVTIVVSIDFATAQKMQYFFPCRMITLGVTSSLEA VGFMAVLAARLAARNMGVNPVSGFYHDHLFVPLGREDEAVEVLAAVAREHRDKLPPPAPPSASASTSASASVSSC AAAPSGQLPPH*
Coding	>Hirsu2\|3936 ATGGCATCGACAAACCTGGACGCGTTCGGGGCCATCATCACGAGCGAGCGCAAGCCCAAGGGCGAGATCACGCCC GAGGCCCGGGCCGCCATCATCGCGGCAGTACAGGCGGGGGAGCGCAAGAGCGTCATCGCCGCCCGCTTCCGCATC TCGCCCGCCGCCGTCGACCGGACGCTGCAGCGGTTCGAGAAGACGGGCCAGCTGGTCTCGCGCCCGCGCTCCGGC CGGCCCAAGACCAAGCCGGTCGCCGAGCCGCCGTCGGAGCCGTCGGCGCGCGTCGTCGGGCCCGTGCGCAACGTC CGCTCGCCGCCCGGGCCCGCCATGGCGTCCGCCGCCGGGAACGTCAACAGCAACAGGAAGCAGCAGCAGAACCAG CACCAGCAGAACCAGCACCAGCAGAACCAGCACCAGCTCCTGCTGGCCGCCGACCCGGGCGAGCGCTCGCTGGCG ACGCTGCTGGCGACGCTGACGACGACGCTGCACCCCACCACCTACGTCTTCACCAGCCTCAGCCCCGTCTCGCCG CTGCCGCCGCTGGCCGAGATCCAGCTGCTGTTCCGCGAGCCCGAGGGCGTGACCATCGTCGTCAGCATCGACTTC GCCACCGCCCAGAAGATGCAGTACTTCTTCCCCTGCCGCATGATCACCCTCGGCGTCACCTCCAGCCTCGAGGCC GTCGGCTTCATGGCCGTCCTCGCCGCCCGCCTCGCCGCCCGCAACATGGGCGTCAACCCCGTCAGCGGCTTCTAC CACGACCACCTGTTCGTGCCCCTCGGCCGCGAGGACGAGGCCGTCGAAGTCCTCGCCGCCGTCGCCCGCGAGCAC CGCGACAAGCTGCCGCCACCCGCCCCGCCCTCCGCCTCCGCCTCCACCTCCGCCTCCGCCTCCGTCTCCTCCTGC GCCGCCGCGCCCTCCGGCCAGCTGCCCCCCCACTGA
Transcript	>Hirsu2\|3936 ATGGCATCGACAAACCTGGACGCGTTCGGGGCCATCATCACGAGCGAGCGCAAGCCCAAGGGCGAGATCACGCCC GAGGCCCGGGCCGCCATCATCGCGGCAGTACAGGCGGGGGAGCGCAAGAGCGTCATCGCCGCCCGCTTCCGCATC TCGCCCGCCGCCGTCGACCGGACGCTGCAGCGGTTCGAGAAGACGGGCCAGCTGGTCTCGCGCCCGCGCTCCGGC CGGCCCAAGACCAAGCCGGTCGCCGAGCCGCCGTCGGAGCCGTCGGCGCGCGTCGTCGGGCCCGTGCGCAACGTC CGCTCGCCGCCCGGGCCCGCCATGGCGTCCGCCGCCGGGAACGTCAACAGCAACAGGAAGCAGCAGCAGAACCAG CACCAGCAGAACCAGCACCAGCAGAACCAGCACCAGCTCCTGCTGGCCGCCGACCCGGGCGAGCGCTCGCTGGCG ACGCTGCTGGCGACGCTGACGACGACGCTGCACCCCACCACCTACGTCTTCACCAGCCTCAGCCCCGTCTCGCCG CTGCCGCCGCTGGCCGAGATCCAGCTGCTGTTCCGCGAGCCCGAGGGCGTGACCATCGTCGTCAGCATCGACTTC GCCACCGCCCAGAAGATGCAGTACTTCTTCCCCTGCCGCATGATCACCCTCGGCGTCACCTCCAGCCTCGAGGCC GTCGGCTTCATGGCCGTCCTCGCCGCCCGCCTCGCCGCCCGCAACATGGGCGTCAACCCCGTCAGCGGCTTCTAC CACGACCACCTGTTCGTGCCCCTCGGCCGCGAGGACGAGGCCGTCGAAGTCCTCGCCGCCGTCGCCCGCGAGCAC CGCGACAAGCTGCCGCCACCCGCCCCGCCCTCCGCCTCCGCCTCCACCTCCGCCTCCGCCTCCGTCTCCTCCTGC GCCGCCGCGCCCTCCGGCCAGCTGCCCCCCCACTGA
Gene	>Hirsu2\|3936 ATGGCATCGACAAACCTGGACGCGTTCGGGGCCATCATCACGAGCGAGCGCAAGCCCAAGGGCGAGATCACGCCC GAGGCCCGGGCCGCCATCATCGCGGCAGTACAGGCGGGGGAGCGCAAGAGCGTCATCGCCGCCCGCTTCCGCATC TCGCCCGCCGCCGTCGACCGGACGCTGCAGCGGTTCGAGAAGACGGGCCAGCTGGTCTCGCGCCCGCGCTCCGGC CGGCCCAAGACCAAGCCGGTCGCCGAGCCGCCGTCGGAGCCGTCGGCGCGCGTCGTCGGGCCCGTGCGCAACGTC CGCTCGCCGCCCGGGCCCGCCATGGCGTCCGCCGCCGGGAACGTCAACAGCAACAGGAAGCAGCAGCAGAACCAG CACCAGCAGAACCAGCACCAGCAGAACCAGCACCAGCTCCTGCTGGCCGCCGACCCGGGCGAGCGCTCGCTGGCG ACGCTGCTGGCGACGCTGACGACGACGCTGCACCCCACCACCTACGTCTTCACCAGCCTCAGCCCCGTCTCGCCG CTGCCGCCGCTGGCCGAGATCCAGCTGCTGTTCCGCGAGCCCGAGGGCGTGACCATCGTCGTCAGCATCGACTTC GCCACCGCCCAGAAGATGCAGTACTTCTTCCCCTGCCGCATGATCACCCTCGGCGTCACCTCCAGCCTCGAGGCC GTCGGCTTCATGGCCGTCCTCGCCGCCCGCCTCGCCGCCCGCAACATGGGCGTCAACCCCGTCAGCGGCTTCTAC CACGACCACCTGTTCGTGCCCCTCGGCCGCGAGGACGAGGCCGTCGAAGTCCTCGCCGCCGTCGCCCGCGAGCAC CGCGACAAGCTGCCGCCACCCGCCCCGCCCTCCGCCTCCGCCTCCACCTCCGCCTCCGCCTCCGTCTCCTCCTGC GCCGCCGCGCCCTCCGGCCAGCTGCCCCCCCACTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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