Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|3899
Gene name
LocationContig_205:11843..12209
Strand-
Gene length (bp)366
Transcript length (bp)366
Coding sequence length (bp)366
Protein length (aa) 122

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08787 Alginate_lyase2 Alginate lyase 1.5E-18 5 118

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 21 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|3899
MKVVKADDGTHGTVIGQVFANGPLLEIFYSPRGDIVAGISQPHTEIQDIKHIGHVRLRSEFQYEISYTKNRLSVT
VNKRTTHFDTSQWGSPMSYFKLGNYNQAKSRTSSEVHIGAIKLIHG*
Coding >Hirsu2|3899
ATGAAGGTCGTCAAGGCAGACGACGGCACCCACGGAACCGTCATCGGGCAAGTCTTTGCAAATGGCCCTCTCCTG
GAGATCTTCTACAGCCCAAGAGGCGACATTGTAGCCGGCATCAGCCAGCCTCACACCGAGATCCAAGACATCAAG
CACATCGGCCATGTGCGTCTCCGCTCCGAGTTCCAGTACGAGATATCGTATACAAAGAATCGACTGTCTGTTACT
GTCAACAAGCGAACGACGCATTTCGACACATCTCAATGGGGTTCTCCCATGTCCTACTTCAAGCTCGGCAACTAC
AATCAAGCAAAGTCAAGAACTAGCTCGGAGGTGCATATCGGCGCCATTAAATTAATCCACGGCTGA
Transcript >Hirsu2|3899
ATGAAGGTCGTCAAGGCAGACGACGGCACCCACGGAACCGTCATCGGGCAAGTCTTTGCAAATGGCCCTCTCCTG
GAGATCTTCTACAGCCCAAGAGGCGACATTGTAGCCGGCATCAGCCAGCCTCACACCGAGATCCAAGACATCAAG
CACATCGGCCATGTGCGTCTCCGCTCCGAGTTCCAGTACGAGATATCGTATACAAAGAATCGACTGTCTGTTACT
GTCAACAAGCGAACGACGCATTTCGACACATCTCAATGGGGTTCTCCCATGTCCTACTTCAAGCTCGGCAACTAC
AATCAAGCAAAGTCAAGAACTAGCTCGGAGGTGCATATCGGCGCCATTAAATTAATCCACGGCTGA
Gene >Hirsu2|3899
ATGAAGGTCGTCAAGGCAGACGACGGCACCCACGGAACCGTCATCGGGCAAGTCTTTGCAAATGGCCCTCTCCTG
GAGATCTTCTACAGCCCAAGAGGCGACATTGTAGCCGGCATCAGCCAGCCTCACACCGAGATCCAAGACATCAAG
CACATCGGCCATGTGCGTCTCCGCTCCGAGTTCCAGTACGAGATATCGTATACAAAGAATCGACTGTCTGTTACT
GTCAACAAGCGAACGACGCATTTCGACACATCTCAATGGGGTTCTCCCATGTCCTACTTCAAGCTCGGCAACTAC
AATCAAGCAAAGTCAAGAACTAGCTCGGAGGTGCATATCGGCGCCATTAAATTAATCCACGGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail