© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3874 |
| Gene name | |
| Location | Contig_204:13029..14580 |
| Strand | + |
| Gene length (bp) | 1551 |
| Transcript length (bp) | 1365 |
| Coding sequence length (bp) | 1365 |
| Protein length (aa) | 455 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10355 | Ytp1 | Protein of unknown function (Ytp1) | 1.5E-67 | 134 | 377 |
| PF10348 | DUF2427 | Domain of unknown function (DUF2427) | 1.9E-30 | 7 | 106 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P53584|YTP1_YEAST | Protein YTP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YTP1 PE=1 SV=1 | 135 | 426 | 4.0E-68 |
| sp|O59714|YBH6_SCHPO | Uncharacterized membrane protein C3B8.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC3B8.06 PE=1 SV=1 | 117 | 285 | 7.0E-09 |
| sp|P25639|YCV1_YEAST | Uncharacterized membrane protein YCR061W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR061W PE=1 SV=2 | 191 | 346 | 3.0E-07 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 34 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 42 | 22 |
| 2 | 49 | 71 | 22 |
| 3 | 81 | 103 | 22 |
| 4 | 124 | 146 | 22 |
| 5 | 161 | 183 | 22 |
| 6 | 254 | 271 | 17 |
| 7 | 281 | 303 | 22 |
| 8 | 316 | 338 | 22 |
| 9 | 353 | 375 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3874 MADSKISAGDTVSQEPIDTILWIHIFTQMLAYGVIFPIGMVFGMTKSRWHVPTQISGSVLALLGFVLGHAHGGRE FVGGNVHSGFATILQLLLIAQVVLGLYLKGHWEKGLNGRLRRFIRPCHSIIGKAMPVLSWTQMIFGGITALGFCQ SDHLGQCLAHFIMGSAFIAYGILMAIILVVGQVWMRRTGRSQEFFDSAVIAAWGCVNTFTEHRWGSAWVRNDWQH TTMGIIWWCAGLAGMWLSRDRDGNPKRNFIPGFVIFMTGWAMSAHPQSLMTSAMTHSMFGKTLMAAGVTRIIEIA FVLKDKQSLSDNGRSWNSFQYLPVFLMYASGFLFMGATEEQMLLIEASDLDHVSYILILYSLAFMVFLFSNMLVN LYDRLANPADSKDMGNGHACVGGRGMEEGRLRDAGDFELDGLMSDDEGDENRRMLSRSEDGSSLDTPTTLGKNNE SSAH* |
| Coding | >Hirsu2|3874 ATGGCCGACAGCAAGATCTCCGCCGGGGACACCGTCTCCCAAGAACCCATCGATACGATCCTATGGATCCACATC TTCACCCAGATGCTCGCCTATGGCGTCATCTTCCCCATCGGAATGGTCTTTGGCATGACCAAGTCTCGGTGGCAT GTCCCGACGCAAATTTCCGGCTCCGTCCTGGCTCTTCTCGGCTTCGTCCTCGGCCATGCACACGGGGGCCGTGAG TTCGTCGGCGGCAACGTCCACTCTGGCTTCGCCACCATACTCCAGCTGCTCCTCATCGCTCAGGTCGTCCTCGGC CTTTATCTCAAGGGCCACTGGGAGAAGGGGCTCAACGGCAGACTCCGAAGATTCATCCGGCCTTGCCACTCCATC ATTGGCAAGGCCATGCCTGTCCTGTCCTGGACTCAGATGATTTTCGGCGGCATCACCGCCCTGGGTTTCTGCCAG AGCGACCACCTGGGCCAGTGCTTGGCCCATTTCATCATGGGCAGTGCCTTCATCGCCTATGGCATCCTCATGGCA ATCATCCTCGTCGTCGGCCAAGTCTGGATGCGCCGCACCGGGCGCTCGCAAGAATTCTTTGACAGTGCCGTCATC GCCGCCTGGGGCTGCGTCAACACCTTCACCGAGCACCGATGGGGCAGCGCCTGGGTGAGGAACGATTGGCAGCAC ACGACCATGGGAATCATCTGGTGGTGCGCTGGCCTGGCAGGCATGTGGCTCAGCCGGGATCGTGACGGGAACCCG AAGCGCAACTTTATACCAGGCTTCGTCATCTTCATGACCGGCTGGGCCATGTCGGCGCATCCCCAGTCTCTCATG ACGAGCGCCATGACGCATAGCATGTTTGGCAAGACGTTGATGGCTGCCGGTGTGACTCGCATCATTGAAATAGCC TTCGTTCTGAAGGACAAGCAGTCCCTCTCGGACAATGGCCGTTCCTGGAACAGCTTCCAGTATCTCCCTGTTTTT CTTATGTACGCCTCGGGCTTCCTGTTCATGGGGGCAACAGAGGAGCAAATGCTCCTGATCGAGGCCTCCGATCTC GACCACGTCTCGTATATCCTGATTCTCTACTCGCTTGCCTTCATGGTTTTCCTCTTCAGCAACATGCTTGTTAAC CTGTACGACCGTCTGGCCAACCCTGCCGACTCGAAAGATATGGGCAATGGACATGCTTGTGTTGGCGGCCGCGGC ATGGAAGAGGGCCGACTCCGGGACGCCGGCGATTTCGAGCTGGATGGCTTGATGAGCGACGACGAGGGGGACGAG AATCGCCGCATGCTGAGTCGGAGTGAGGACGGATCCAGTCTGGATACCCCGACCACACTCGGAAAAAATAACGAG TCGTCGGCGCATTGA |
| Transcript | >Hirsu2|3874 ATGGCCGACAGCAAGATCTCCGCCGGGGACACCGTCTCCCAAGAACCCATCGATACGATCCTATGGATCCACATC TTCACCCAGATGCTCGCCTATGGCGTCATCTTCCCCATCGGAATGGTCTTTGGCATGACCAAGTCTCGGTGGCAT GTCCCGACGCAAATTTCCGGCTCCGTCCTGGCTCTTCTCGGCTTCGTCCTCGGCCATGCACACGGGGGCCGTGAG TTCGTCGGCGGCAACGTCCACTCTGGCTTCGCCACCATACTCCAGCTGCTCCTCATCGCTCAGGTCGTCCTCGGC CTTTATCTCAAGGGCCACTGGGAGAAGGGGCTCAACGGCAGACTCCGAAGATTCATCCGGCCTTGCCACTCCATC ATTGGCAAGGCCATGCCTGTCCTGTCCTGGACTCAGATGATTTTCGGCGGCATCACCGCCCTGGGTTTCTGCCAG AGCGACCACCTGGGCCAGTGCTTGGCCCATTTCATCATGGGCAGTGCCTTCATCGCCTATGGCATCCTCATGGCA ATCATCCTCGTCGTCGGCCAAGTCTGGATGCGCCGCACCGGGCGCTCGCAAGAATTCTTTGACAGTGCCGTCATC GCCGCCTGGGGCTGCGTCAACACCTTCACCGAGCACCGATGGGGCAGCGCCTGGGTGAGGAACGATTGGCAGCAC ACGACCATGGGAATCATCTGGTGGTGCGCTGGCCTGGCAGGCATGTGGCTCAGCCGGGATCGTGACGGGAACCCG AAGCGCAACTTTATACCAGGCTTCGTCATCTTCATGACCGGCTGGGCCATGTCGGCGCATCCCCAGTCTCTCATG ACGAGCGCCATGACGCATAGCATGTTTGGCAAGACGTTGATGGCTGCCGGTGTGACTCGCATCATTGAAATAGCC TTCGTTCTGAAGGACAAGCAGTCCCTCTCGGACAATGGCCGTTCCTGGAACAGCTTCCAGTATCTCCCTGTTTTT CTTATGTACGCCTCGGGCTTCCTGTTCATGGGGGCAACAGAGGAGCAAATGCTCCTGATCGAGGCCTCCGATCTC GACCACGTCTCGTATATCCTGATTCTCTACTCGCTTGCCTTCATGGTTTTCCTCTTCAGCAACATGCTTGTTAAC CTGTACGACCGTCTGGCCAACCCTGCCGACTCGAAAGATATGGGCAATGGACATGCTTGTGTTGGCGGCCGCGGC ATGGAAGAGGGCCGACTCCGGGACGCCGGCGATTTCGAGCTGGATGGCTTGATGAGCGACGACGAGGGGGACGAG AATCGCCGCATGCTGAGTCGGAGTGAGGACGGATCCAGTCTGGATACCCCGACCACACTCGGAAAAAATAACGAG TCGTCGGCGCATTGA |
| Gene | >Hirsu2|3874 ATGGCCGACAGCAAGATCTCCGCCGGGGACACCGTCTCCCAAGAACCCATCGTGAGCACTCTGCCGCCGACCAGC CCTCGCCGCCTGCTTGTGCTGACGGATACTCGCAGGATACGATCCTATGGATCCACATCTTCACCCAGATGCTCG CCTATGGCGTCATCTTCCCCATCGGAATGGTCTTTGGCGTAGGTGTATCCCGCTTCGGCGACGCCAAGGAGAGCA AGACCGCTGACAGCCGCTCCCTTTTCCCGACAGATGACCAAGTCTCGGTGGCATGTCCCGACGCAAATTTCCGGC TCCGTCCTGGCTCTTCTCGGCTTCGTCCTCGGCCATGCACACGGGGGCCGTGAGTTCGTCGGCGGCAACGTCCAC TCTGGCTTCGCCACCATACTCCAGCTGCTCCTCATCGCTCAGGTCGTCCTCGGCCTTTATCTCAAGGGCCACTGG GAGAAGGGGCTCAACGGCAGACTCCGAAGATTCATCCGGCCTTGCCACTCCATCATTGGCAAGGCCATGCCTGTC CTGTCCTGGACTCAGATGATTTTCGGCGGCATCACCGCCCTGGGTTTCTGCCAGAGCGACCACCTGGGCCAGTGC TTGGCCCATTTCATCATGGGCAGTGCCTTCATCGCCTATGGCATCCTCATGGCAATCATCCTCGTCGTCGGCCAA GTCTGGATGCGCCGCACCGGGCGCTCGCAAGAATTCTTTGACAGTGCCGTCATCGCCGCCTGGGGCTGCGTCAAC ACCTTCACCGAGCACCGATGGGGCAGCGCCTGGGTGAGGAACGATTGGCAGCACACGACCATGGGAATCATCTGG TGGTGCGCTGGCCTGGCAGGCATGTGGCTCAGCCGGGATCGTGACGGGAACCCGAAGCGCAACTTTATACCAGGC TTCGTCATCTTCATGACCGGCTGGGCCATGTCGGCGCATCCCCAGTCTCTCATGACGAGCGCCATGACGCATAGC ATGTTTGGCAAGACGTTGATGGCTGCCGGTGTGACTCGCATCATTGAAATAGCCTTCGTTCTGAAGGACAAGCAG TCCCTCTCGGACAATGGCCGTTCCTGGAACAGCTTCCAGTATCTCCCTGTTTTTGTGAGTCTTCTCATCGTCAGA GGCCCGATAGGTGACCAAGTACTGACGTGTTCCCAGCTTATGTACGCCTCGGGCTTCCTGTTCATGGGGGCAACA GAGGAGCAAATGCTCCTGATCGAGGCCTCCGATCTCGACCACGTCTCGTATATCCTGATTCTCTACTCGCTTGCC TTCATGGTTTTCCTCTTCAGCAACATGCTTGTTAACCTGTACGACCGTCTGGCCAACCCTGCCGACTCGAAAGAT ATGGGCAATGGACATGCTTGTGTTGGCGGCCGCGGCATGGAAGAGGGCCGACTCCGGGACGCCGGCGATTTCGAG CTGGATGGCTTGATGAGCGACGACGAGGGGGACGAGAATCGCCGCATGCTGAGTCGGAGTGAGGACGGATCCAGT CTGGATACCCCGACCACACTCGGAAAAAATAACGAGTCGTCGGCGCATTGA |