Protein ID | Hirsu2|3864 |
Gene name | |
Location | Contig_2038:2139..3204 |
Strand | + |
Gene length (bp) | 1065 |
Transcript length (bp) | 840 |
Coding sequence length (bp) | 840 |
Protein length (aa) | 280 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF12588 | PSDC | Phophatidylserine decarboxylase | 4.4E-46 | 107 | 238 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.1647 | 0.0642 | 0.8656 | 0.1265 | 0.086 | 0.054 | 0.4838 | 0.3794 | 0.3281 | 0.0079 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 30 | 0.975612 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 12 | 31 | 19 |
Orthofinder run ID | 4 |
Orthogroup | 309 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3864 MRFATASSGGRSSLLLLLLSGAFVAVSGLAAEQASSYAPRHRDDRPRYGAQEDLLRPKSPPMSDVLPDYTLIRNP DAWRSQERRNYHDMIARMAKHVDRNPADKLTPALEELKILIETNPRIYMYFVQMFDEIPHRFPYNSDGVGKPVLR DYRHMLQVLNHIVTRGPDVDTVGVPMVIILAYPMGTASGHAAFLDPTVNKAFKKVLREWGHFLLSPASCDVLGTS DSGWFGKQKLHELEQAANAPYHTHKTFEQLFECDPSAESHGYKSWDGKSAAPGP* |
Coding | >Hirsu2|3864 ATGAGATTCGCAACCGCCTCTTCTGGCGGCCGAAGCAGCCTGCTGCTCCTGCTGCTCTCCGGCGCCTTTGTCGCC GTCTCGGGCCTCGCCGCTGAGCAGGCGTCGTCTTACGCGCCTCGCCATCGTGATGACAGGCCCCGATATGGCGCC CAGGAAGACCTTCTCCGTCCCAAGTCGCCGCCCATGTCGGATGTCCTGCCGGACTACACCCTCATCCGCAACCCC GATGCGTGGCGGTCCCAAGAGCGGCGCAACTACCACGACATGATCGCGCGCATGGCCAAGCACGTCGACCGGAAC CCGGCGGACAAGCTGACGCCGGCGCTGGAGGAGCTCAAGATCCTGATCGAGACGAACCCCCGTATATACATGTAC TTTGTCCAGATGTTTGACGAGATCCCGCATCGCTTCCCGTACAATTCGGACGGGGTGGGCAAGCCCGTCCTCCGC GACTATCGTCACATGCTGCAGGTCCTCAACCACATCGTCACCCGTGGCCCGGACGTGGACACGGTGGGCGTGCCG ATGGTCATTATCCTGGCCTATCCGATGGGCACAGCGAGTGGCCACGCCGCGTTCCTCGACCCGACGGTGAACAAG GCGTTCAAGAAGGTGCTCCGAGAATGGGGTCACTTCCTACTGTCTCCGGCCTCGTGCGACGTCCTCGGCACGAGC GACTCCGGCTGGTTCGGCAAGCAGAAGCTGCACGAGCTCGAGCAGGCGGCCAACGCCCCGTACCACACGCACAAG ACGTTTGAGCAGCTGTTCGAGTGCGACCCGTCGGCCGAGTCTCACGGGTACAAGTCCTGGGACGGTAAGTCTGCT GCTCCTGGCCCGTAA |
Transcript | >Hirsu2|3864 ATGAGATTCGCAACCGCCTCTTCTGGCGGCCGAAGCAGCCTGCTGCTCCTGCTGCTCTCCGGCGCCTTTGTCGCC GTCTCGGGCCTCGCCGCTGAGCAGGCGTCGTCTTACGCGCCTCGCCATCGTGATGACAGGCCCCGATATGGCGCC CAGGAAGACCTTCTCCGTCCCAAGTCGCCGCCCATGTCGGATGTCCTGCCGGACTACACCCTCATCCGCAACCCC GATGCGTGGCGGTCCCAAGAGCGGCGCAACTACCACGACATGATCGCGCGCATGGCCAAGCACGTCGACCGGAAC CCGGCGGACAAGCTGACGCCGGCGCTGGAGGAGCTCAAGATCCTGATCGAGACGAACCCCCGTATATACATGTAC TTTGTCCAGATGTTTGACGAGATCCCGCATCGCTTCCCGTACAATTCGGACGGGGTGGGCAAGCCCGTCCTCCGC GACTATCGTCACATGCTGCAGGTCCTCAACCACATCGTCACCCGTGGCCCGGACGTGGACACGGTGGGCGTGCCG ATGGTCATTATCCTGGCCTATCCGATGGGCACAGCGAGTGGCCACGCCGCGTTCCTCGACCCGACGGTGAACAAG GCGTTCAAGAAGGTGCTCCGAGAATGGGGTCACTTCCTACTGTCTCCGGCCTCGTGCGACGTCCTCGGCACGAGC GACTCCGGCTGGTTCGGCAAGCAGAAGCTGCACGAGCTCGAGCAGGCGGCCAACGCCCCGTACCACACGCACAAG ACGTTTGAGCAGCTGTTCGAGTGCGACCCGTCGGCCGAGTCTCACGGGTACAAGTCCTGGGACGGTAAGTCTGCT GCTCCTGGCCCGTAA |
Gene | >Hirsu2|3864 ATGAGATTCGCAACCGCCTCTTCTGGCGGCCGAAGCAGCCTGCTGCTCCTGCTGCTCTCCGGCGCCTTTGTCGCC GTCTCGGGCCTCGCCGCTGAGCAGGCGTCGTCTTACGCGCCTCGCCATCGTGATGACAGGCCCCGATATGGCGCC CAGGAAGACCTTCTCCGTCCCAAGTCGCCGCCCATGTCGGATGTCCTGCCGGACTACACCCTCATCCGCAAGTCA GTCCTCCGCCCCCGGCACCCCGTGGATCGAGAGCGGTAGGCAGAGCAAAGGATGGTGAAAGGCTGATGGGAGTCG TTTCCGCCTTGCCCAGCCCCGATGCGTGGCGGTCCCAAGAGCGGCGCAACTACCACGACATGATCGCGCGCATGG CCAAGCACGTCGACCGGAACCCGGCGGACAAGCTGACGCCGGCGCTGGAGGAGCTCAAGATCCTGATCGAGACGA ACCCCCGTATATACATGTACTTTGTCCAGATGTTTGACGAGATCCCGCATCGCTTCCCGTACAATTCGGACGGGG TGGGCAAGCCCGTCCTCCGCGACTATCGTCACATGCTGCAGGTCCTCAACCACATCGTCACCCGTGGCCCGGACG TGGACACGGTGGGCGTGCCGATGGTCATTATCCTGGCCTATCCGATGGGCACAGCGAGGTCGGTGCTCCCGTCTC GCCTCGGAGGGGCCTAGCATCACCCAAGCACGAGAAAGGGAGCTGACTGGAGACGGCATCGCAGTGGCCACGCCG CGTTCCTCGACCCGACGGTGAACAAGGCGTTCAAGAAGGTGCTCCGAGAATGGGGTCACTTCCTACTGGTATGCC GTCTTGCTTCCGGGATAGGATTTATCTGATGCGCTTTGTCAGTCTCCGGCCTCGTGCGACGTCCTCGGCACGAGC GACTCCGGCTGGTTCGGCAAGCAGAAGCTGCACGAGCTCGAGCAGGCGGCCAACGCCCCGTACCACACGCACAAG ACGTTTGAGCAGCTGTTCGAGTGCGACCCGTCGGCCGAGTCTCACGGGTACAAGTCCTGGGACGGTAAGTCTGCT GCTCCTGGCCCGTAA |