Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|3863
Gene name
LocationContig_2036:2086..3001
Strand+
Gene length (bp)915
Transcript length (bp)915
Coding sequence length (bp)915
Protein length (aa) 305

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PFAM Domains

(None)

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|D4AZV8|SMD_ARTBC Sphingomyelinase D OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_01728 PE=3 SV=1 34 304 6.0E-74
sp|F2SCC4|SMD_TRIRC Sphingomyelinase D OS=Trichophyton rubrum (strain ATCC MYA-4607 / CBS 118892) GN=TERG_01406 PE=3 SV=1 37 304 7.0E-74
sp|Q59332|PLD_CORUL Phospholipase D OS=Corynebacterium ulcerans GN=pld PE=3 SV=1 30 304 3.0E-66
sp|B8NQ51|SMD_ASPFN Sphingomyelinase D OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=AFLA_004420 PE=1 SV=1 14 304 3.0E-66
sp|Q59121|PLD_ARCHD Phospholipase D OS=Arcanobacterium haemolyticum (strain ATCC 9345 / DSM 20595 / NBRC 15585 / NCTC 8452 / 11018) GN=pld PE=3 SV=2 16 304 9.0E-64
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|D4AZV8|SMD_ARTBC Sphingomyelinase D OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_01728 PE=3 SV=1 34 304 6.0E-74
sp|F2SCC4|SMD_TRIRC Sphingomyelinase D OS=Trichophyton rubrum (strain ATCC MYA-4607 / CBS 118892) GN=TERG_01406 PE=3 SV=1 37 304 7.0E-74
sp|Q59332|PLD_CORUL Phospholipase D OS=Corynebacterium ulcerans GN=pld PE=3 SV=1 30 304 3.0E-66
sp|B8NQ51|SMD_ASPFN Sphingomyelinase D OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=AFLA_004420 PE=1 SV=1 14 304 3.0E-66
sp|Q59121|PLD_ARCHD Phospholipase D OS=Arcanobacterium haemolyticum (strain ATCC 9345 / DSM 20595 / NBRC 15585 / NCTC 8452 / 11018) GN=pld PE=3 SV=2 16 304 9.0E-64
sp|P20626|PLD_CORPS Phospholipase D OS=Corynebacterium pseudotuberculosis GN=pld PE=1 SV=1 14 304 1.0E-63
sp|J3K844|SMD_COCIM Sphingomyelinase D OS=Coccidioides immitis (strain RS) GN=CIMG_06182 PE=3 SV=1 34 304 1.0E-55
sp|C0NUU1|SMD_AJECG Sphingomyelinase D OS=Ajellomyces capsulatus (strain G186AR / H82 / ATCC MYA-2454 / RMSCC 2432) GN=HCBG_06705 PE=3 SV=1 13 304 6.0E-54
sp|C4JUE5|SMD_UNCRE Sphingomyelinase D OS=Uncinocarpus reesii (strain UAMH 1704) GN=UREG_04748 PE=3 SV=1 36 304 1.0E-51
sp|C0S3M9|SMD_PARBP Sphingomyelinase D OS=Paracoccidioides brasiliensis (strain Pb03) GN=PABG_02293 PE=3 SV=1 36 276 2.0E-51
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 29 0.45

Transmembrane Domains

Domain # Start End Length
1 12 34 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|3863
MRIGRDQVGGPWTAVLLLLLLLPATAAGVAVRMGPKPFYAIAHRVLMDYGVRDALRHGANALEIDVQPWRDGWYA
DHDGTAWSAGHTAERMFRAVAEHRRAGWPVIFVWLDIKNPDWCDGGWASCNIEALRDLARRILEPAGVRVLYGFW
ADHQHGRGYRLIRDGLNANEAVALEGDLDVVARAFERDGPADVRKRVYSRGLFVPAFDFGDCADPGGSGVCPELR
RAADSGLFGNVFGWTISADEVETGEVLMENTNVDGLIYGFVATHYHDDQDVLYPLSFLYHWTRANTAKRSYATVR
DPPW*
Coding >Hirsu2|3863
ATGCGGATCGGCCGGGACCAGGTGGGCGGGCCGTGGACGGCCGTCCTGCTGCTGCTGCTGCTGCTCCCGGCGACG
GCGGCCGGGGTGGCGGTGCGGATGGGCCCGAAGCCCTTCTACGCCATCGCGCACCGGGTGCTGATGGACTACGGC
GTGCGGGACGCGCTCCGGCACGGGGCCAACGCGCTGGAGATCGACGTGCAGCCGTGGCGGGACGGATGGTACGCA
GACCACGACGGCACGGCCTGGAGCGCCGGGCACACGGCGGAGCGCATGTTCCGGGCCGTGGCGGAGCACCGGCGC
GCGGGCTGGCCCGTCATCTTCGTCTGGCTCGACATCAAGAACCCGGACTGGTGCGACGGCGGCTGGGCCAGCTGC
AACATAGAGGCGCTGCGCGACCTGGCGCGGCGCATCCTCGAGCCGGCCGGCGTCCGGGTCCTGTACGGCTTCTGG
GCCGACCACCAGCACGGCCGGGGCTACCGCCTCATCCGCGACGGGCTCAACGCCAACGAGGCCGTTGCGCTCGAG
GGCGACTTGGACGTCGTCGCCCGCGCCTTCGAACGCGACGGGCCGGCCGACGTCCGCAAGCGCGTCTACTCGCGC
GGCCTCTTCGTCCCGGCCTTTGACTTCGGCGACTGCGCCGACCCGGGCGGCTCCGGCGTCTGCCCGGAGCTGCGC
CGCGCCGCCGACTCGGGCCTCTTCGGCAACGTCTTCGGCTGGACCATCTCCGCCGACGAGGTCGAGACCGGCGAG
GTCCTGATGGAGAACACCAACGTCGACGGCCTCATCTACGGCTTCGTCGCCACCCACTACCACGACGACCAGGAC
GTCCTCTACCCCCTGAGCTTCCTCTACCACTGGACCCGCGCCAACACGGCCAAGCGCTCCTACGCCACCGTCCGC
GACCCGCCCTGGTGA
Transcript >Hirsu2|3863
ATGCGGATCGGCCGGGACCAGGTGGGCGGGCCGTGGACGGCCGTCCTGCTGCTGCTGCTGCTGCTCCCGGCGACG
GCGGCCGGGGTGGCGGTGCGGATGGGCCCGAAGCCCTTCTACGCCATCGCGCACCGGGTGCTGATGGACTACGGC
GTGCGGGACGCGCTCCGGCACGGGGCCAACGCGCTGGAGATCGACGTGCAGCCGTGGCGGGACGGATGGTACGCA
GACCACGACGGCACGGCCTGGAGCGCCGGGCACACGGCGGAGCGCATGTTCCGGGCCGTGGCGGAGCACCGGCGC
GCGGGCTGGCCCGTCATCTTCGTCTGGCTCGACATCAAGAACCCGGACTGGTGCGACGGCGGCTGGGCCAGCTGC
AACATAGAGGCGCTGCGCGACCTGGCGCGGCGCATCCTCGAGCCGGCCGGCGTCCGGGTCCTGTACGGCTTCTGG
GCCGACCACCAGCACGGCCGGGGCTACCGCCTCATCCGCGACGGGCTCAACGCCAACGAGGCCGTTGCGCTCGAG
GGCGACTTGGACGTCGTCGCCCGCGCCTTCGAACGCGACGGGCCGGCCGACGTCCGCAAGCGCGTCTACTCGCGC
GGCCTCTTCGTCCCGGCCTTTGACTTCGGCGACTGCGCCGACCCGGGCGGCTCCGGCGTCTGCCCGGAGCTGCGC
CGCGCCGCCGACTCGGGCCTCTTCGGCAACGTCTTCGGCTGGACCATCTCCGCCGACGAGGTCGAGACCGGCGAG
GTCCTGATGGAGAACACCAACGTCGACGGCCTCATCTACGGCTTCGTCGCCACCCACTACCACGACGACCAGGAC
GTCCTCTACCCCCTGAGCTTCCTCTACCACTGGACCCGCGCCAACACGGCCAAGCGCTCCTACGCCACCGTCCGC
GACCCGCCCTGGTGA
Gene >Hirsu2|3863
ATGCGGATCGGCCGGGACCAGGTGGGCGGGCCGTGGACGGCCGTCCTGCTGCTGCTGCTGCTGCTCCCGGCGACG
GCGGCCGGGGTGGCGGTGCGGATGGGCCCGAAGCCCTTCTACGCCATCGCGCACCGGGTGCTGATGGACTACGGC
GTGCGGGACGCGCTCCGGCACGGGGCCAACGCGCTGGAGATCGACGTGCAGCCGTGGCGGGACGGATGGTACGCA
GACCACGACGGCACGGCCTGGAGCGCCGGGCACACGGCGGAGCGCATGTTCCGGGCCGTGGCGGAGCACCGGCGC
GCGGGCTGGCCCGTCATCTTCGTCTGGCTCGACATCAAGAACCCGGACTGGTGCGACGGCGGCTGGGCCAGCTGC
AACATAGAGGCGCTGCGCGACCTGGCGCGGCGCATCCTCGAGCCGGCCGGCGTCCGGGTCCTGTACGGCTTCTGG
GCCGACCACCAGCACGGCCGGGGCTACCGCCTCATCCGCGACGGGCTCAACGCCAACGAGGCCGTTGCGCTCGAG
GGCGACTTGGACGTCGTCGCCCGCGCCTTCGAACGCGACGGGCCGGCCGACGTCCGCAAGCGCGTCTACTCGCGC
GGCCTCTTCGTCCCGGCCTTTGACTTCGGCGACTGCGCCGACCCGGGCGGCTCCGGCGTCTGCCCGGAGCTGCGC
CGCGCCGCCGACTCGGGCCTCTTCGGCAACGTCTTCGGCTGGACCATCTCCGCCGACGAGGTCGAGACCGGCGAG
GTCCTGATGGAGAACACCAACGTCGACGGCCTCATCTACGGCTTCGTCGCCACCCACTACCACGACGACCAGGAC
GTCCTCTACCCCCTGAGCTTCCTCTACCACTGGACCCGCGCCAACACGGCCAAGCGCTCCTACGCCACCGTCCGC
GACCCGCCCTGGTGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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