Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|3858
Gene name
LocationContig_2031:2706..3682
Strand+
Gene length (bp)976
Transcript length (bp)723
Coding sequence length (bp)723
Protein length (aa) 241

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00144 Beta-lactamase Beta-lactamase 1.1E-30 29 226

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q06317|PBP4_AMYLA Penicillin-binding protein 4 OS=Amycolatopsis lactamdurans GN=pbp PE=3 SV=1 37 227 2.0E-09
sp|Q7A3Q5|FLP_STAAN Protein flp OS=Staphylococcus aureus (strain N315) GN=flp PE=1 SV=1 29 238 3.0E-08
sp|Q99RJ0|FLP_STAAM Protein flp OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=flp PE=3 SV=1 29 238 3.0E-08
sp|Q6GDZ1|FLP_STAAR Protein flp OS=Staphylococcus aureus (strain MRSA252) GN=flp PE=3 SV=1 30 238 4.0E-08
sp|Q5HDB2|FLP_STAAC Protein flp OS=Staphylococcus aureus (strain COL) GN=flp PE=4 SV=1 30 225 6.0E-08
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q06317|PBP4_AMYLA Penicillin-binding protein 4 OS=Amycolatopsis lactamdurans GN=pbp PE=3 SV=1 37 227 2.0E-09
sp|Q7A3Q5|FLP_STAAN Protein flp OS=Staphylococcus aureus (strain N315) GN=flp PE=1 SV=1 29 238 3.0E-08
sp|Q99RJ0|FLP_STAAM Protein flp OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=flp PE=3 SV=1 29 238 3.0E-08
sp|Q6GDZ1|FLP_STAAR Protein flp OS=Staphylococcus aureus (strain MRSA252) GN=flp PE=3 SV=1 30 238 4.0E-08
sp|Q5HDB2|FLP_STAAC Protein flp OS=Staphylococcus aureus (strain COL) GN=flp PE=4 SV=1 30 225 6.0E-08
sp|Q6G6M9|FLP_STAAS Protein flp OS=Staphylococcus aureus (strain MSSA476) GN=flp PE=3 SV=1 30 224 3.0E-07
sp|Q8NUZ4|FLP_STAAW Protein flp OS=Staphylococcus aureus (strain MW2) GN=flp PE=3 SV=1 30 224 3.0E-07
sp|Q8XBJ0|YFEW_ECO57 UPF0214 protein YfeW OS=Escherichia coli O157:H7 GN=yfeW PE=3 SV=1 1 225 2.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 17 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|3858
MRPTTVGLALAGVAAAREPSNPFTDDFGRIVREALDEWHVAGVSIAVVDGDEVFAEGYGFATLPDVAATPETLWY
VGSTTKAHVAAALAQLIDSGRHTDMLPRGWRTPVAAVIRDDFVLQDAWATDHVTLEDAASHQTGLTAHDESLRYN
RSGEGSGESGEARRRRIVRDTVRNLRHLPMQLEPRVEFHYNNQMYTVLGRVVEVVTGQWLGRVLRERVWAPLGMT
ASGGCGRCRRCRRTR*
Coding >Hirsu2|3858
ATGCGGCCCACGACAGTCGGCCTCGCGCTCGCGGGCGTCGCGGCGGCGCGCGAGCCCAGCAACCCCTTCACCGAC
GACTTCGGCCGCATCGTGCGCGAGGCGCTCGACGAGTGGCACGTCGCGGGCGTGTCCATTGCCGTCGTCGACGGC
GACGAGGTCTTCGCCGAGGGCTACGGCTTCGCAACGCTGCCGGACGTGGCGGCTACGCCCGAGACGCTCTGGTAC
GTCGGGTCGACGACCAAGGCGCACGTGGCGGCGGCGCTGGCGCAGCTCATCGACTCGGGCCGGCACACGGACATG
CTGCCGCGCGGGTGGCGGACGCCGGTGGCGGCGGTGATCCGCGACGACTTCGTGCTGCAGGACGCGTGGGCGACG
GACCACGTCACGCTCGAGGACGCGGCCAGCCACCAGACGGGCCTGACGGCGCACGACGAGAGCCTGCGCTACAAC
CGCAGCGGAGAGGGCTCGGGCGAGTCGGGCGAGGCTCGCCGGCGGCGCATCGTCCGCGACACGGTGCGCAACCTG
CGGCACCTGCCGATGCAGCTGGAGCCGCGGGTCGAGTTCCACTACAACAACCAGATGTACACGGTGCTCGGGCGC
GTGGTCGAGGTCGTGACGGGCCAGTGGCTGGGGCGGGTGCTGCGCGAGCGCGTGTGGGCGCCGCTGGGGATGACG
GCCTCCGGCGGCTGCGGGCGATGCCGGCGATGCCGACGGACCCGATGA
Transcript >Hirsu2|3858
ATGCGGCCCACGACAGTCGGCCTCGCGCTCGCGGGCGTCGCGGCGGCGCGCGAGCCCAGCAACCCCTTCACCGAC
GACTTCGGCCGCATCGTGCGCGAGGCGCTCGACGAGTGGCACGTCGCGGGCGTGTCCATTGCCGTCGTCGACGGC
GACGAGGTCTTCGCCGAGGGCTACGGCTTCGCAACGCTGCCGGACGTGGCGGCTACGCCCGAGACGCTCTGGTAC
GTCGGGTCGACGACCAAGGCGCACGTGGCGGCGGCGCTGGCGCAGCTCATCGACTCGGGCCGGCACACGGACATG
CTGCCGCGCGGGTGGCGGACGCCGGTGGCGGCGGTGATCCGCGACGACTTCGTGCTGCAGGACGCGTGGGCGACG
GACCACGTCACGCTCGAGGACGCGGCCAGCCACCAGACGGGCCTGACGGCGCACGACGAGAGCCTGCGCTACAAC
CGCAGCGGAGAGGGCTCGGGCGAGTCGGGCGAGGCTCGCCGGCGGCGCATCGTCCGCGACACGGTGCGCAACCTG
CGGCACCTGCCGATGCAGCTGGAGCCGCGGGTCGAGTTCCACTACAACAACCAGATGTACACGGTGCTCGGGCGC
GTGGTCGAGGTCGTGACGGGCCAGTGGCTGGGGCGGGTGCTGCGCGAGCGCGTGTGGGCGCCGCTGGGGATGACG
GCCTCCGGCGGCTGCGGGCGATGCCGGCGATGCCGACGGACCCGATGA
Gene >Hirsu2|3858
ATGCGGCCCACGACAGTCGGCCTCGCGCTCGCGGGCGTCGCGGCGGCGCGCGAGCCCAGCAACCCCTTCACCGAC
GACTTCGGCCGCATCGTGCGCGAGGCGCTCGACGAGTGGCACGTCGCGGGCGTGTCCATTGCCGTCGTCGACGGC
GACGAGGTCTTCGCCGAGGTACATACACCAGCGGATCCATCTACACACAAATCGATATAAGTCTCTGTCTCTGTG
TGTACACACACACACACACACACACACATATATATATATATGTGTGTGTGTATATATCACTCTCTCTCTATCCAT
TCCACAGTTGCCTGACCTCCCCTCGCTCCTCCCCCCTCTCTCTCGCAGGGCTACGGCTTCGCAACGCTGCCGGAC
GTGGCGGCTACGCCCGAGACGCTCTGGTACGTCGGGTCGACGACCAAGGCGCACGTGGCGGCGGCGCTGGCGCAG
CTCATCGACTCGGGCCGGCACACGGACATGCTGCCGCGCGGGTGGCGGACGCCGGTGGCGGCGGTGATCCGCGAC
GACTTCGTGCTGCAGGACGCGTGGGCGACGGACCACGTCACGCTCGAGGACGCGGCCAGCCACCAGACGGGCCTG
ACGGCGCACGACGAGAGCCTGCGCTACAACCGCAGCGGAGAGGGCTCGGGCGAGTCGGGCGAGGCTCGCCGGCGG
CGCATCGTCCGCGACACGGTGCGCAACCTGCGGCACCTGCCGATGCAGCTGGAGCCGCGGGTCGAGTTCCACTAC
AACAACCAGATGTACACGGTGCTCGGGCGCGTGGTCGAGGTCGTGACGGGCCAGTGGCTGGGGCGGGTGCTGCGC
GAGCGCGTGTGGGCGCCGCTGGGGATGACGGCCTCGTACTTCGACCTGGACGAGGCCCGGGCCGCGCCCCAGCAC
CTGTCGACCGGCTACTACTGGCACCGGGGCGAGCGGCGGCTGCGGGCGATGCCGGCGATGCCGACGGACCCGATG
A

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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