Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|3830
Gene name
LocationContig_202:26023..26403
Strand-
Gene length (bp)380
Transcript length (bp)294
Coding sequence length (bp)294
Protein length (aa) 98

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PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q09730|SFT1_SCHPO Protein transport protein sft1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sft1 PE=3 SV=1 10 97 9.0E-11
sp|P43682|SFT1_YEAST Protein transport protein SFT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SFT1 PE=1 SV=1 6 96 5.0E-09
sp|Q9NYM9|BET1L_HUMAN BET1-like protein OS=Homo sapiens GN=BET1L PE=1 SV=1 8 91 2.0E-06
sp|Q5RBX2|BET1L_PONAB BET1-like protein OS=Pongo abelii GN=BET1L PE=3 SV=1 8 91 3.0E-06

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 15 0.45

Transmembrane Domains

Domain # Start End Length
1 73 95 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|3830
MSEAYERERQNNARLDELSAKVSALRGVTIDIYDNARTQDVIDNTSDTFSSMATQMKGSAGRLTRMAASGNKVAI
LKLSGIVIALFLVLYYGLKIFF*
Coding >Hirsu2|3830
ATGTCGGAAGCCTACGAGCGCGAGCGTCAGAACAACGCCCGCCTCGATGAGCTCTCGGCCAAGGTCTCTGCCCTT
CGCGGCGTCACCATCGACATCTACGACAATGCGCGTACCCAGGATGTCATCGACAATACCTCCGATACCTTCTCC
TCCATGGCGACGCAAATGAAGGGCTCCGCCGGCCGCCTCACCCGCATGGCCGCCTCCGGCAACAAGGTCGCCATC
TTGAAGCTTTCGGGCATCGTCATCGCCCTGTTTCTTGTCCTCTACTACGGCCTGAAGATATTCTTCTAG
Transcript >Hirsu2|3830
ATGTCGGAAGCCTACGAGCGCGAGCGTCAGAACAACGCCCGCCTCGATGAGCTCTCGGCCAAGGTCTCTGCCCTT
CGCGGCGTCACCATCGACATCTACGACAATGCGCGTACCCAGGATGTCATCGACAATACCTCCGATACCTTCTCC
TCCATGGCGACGCAAATGAAGGGCTCCGCCGGCCGCCTCACCCGCATGGCCGCCTCCGGCAACAAGGTCGCCATC
TTGAAGCTTTCGGGCATCGTCATCGCCCTGTTTCTTGTCCTCTACTACGGCCTGAAGATATTCTTCTAG
Gene >Hirsu2|3830
ATGTCGGAAGCCTACGAGCGCGAGCGTCAGAACAACGCCCGCCTCGATGAGCTCTCGGCCAAGGTCTCTGCCCTT
CGCGGCGTCACCATCGACATCTACGACAATGCGCGTACCCAGGATGTCATCGACAATACCGTCCGTCCTCGCCTT
TCCCCTACTATACCTCCACGCGTCCCTTCGCCCGGCGGAGTGTCGATTCCCTGCTGACAACGCGCTCCCAGTCCG
ATACCTTCTCCTCCATGGCGACGCAAATGAAGGGCTCCGCCGGCCGCCTCACCCGCATGGCCGCCTCCGGCAACA
AGGTCGCCATCTTGAAGCTTTCGGGCATCGTCATCGCCCTGTTTCTTGTCCTCTACTACGGCCTGAAGATATTCT
TCTAG

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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