Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|3818
Gene name
LocationContig_2019:628..1603
Strand+
Gene length (bp)975
Transcript length (bp)807
Coding sequence length (bp)807
Protein length (aa) 269

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04117 Mpv17_PMP22 Mpv17 / PMP22 family 7.3E-10 171 226

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q2KIY1|PXMP2_BOVIN Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3 58 231 1.0E-11
sp|Q9ZS51|PMP22_ARATH Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1 55 241 2.0E-11
sp|Q54GD8|PX24C_DICDI PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1 61 234 2.0E-10
sp|Q54FR4|PX24D_DICDI PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1 52 230 3.0E-09

GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0005575 cellular_component No
GO:0110165 cellular anatomical entity No
GO:0031224 intrinsic component of membrane No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Peroxisome Transmembrane domain 0.0402 0.0964 0.0146 0.1118 0.6108 0.1243 0.5302 0.1489 0.058 0.7628

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 110 132 22
2 145 167 22
3 210 229 19

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup5168
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|1062
Ophiocordyceps australis map64 (Brazil) OphauB2|5083
Ophiocordyceps camponoti-floridani Ophcf2|01757
Ophiocordyceps camponoti-rufipedis Ophun1|995
Ophiocordyceps kimflemingae Ophio5|4958
Ophiocordyceps subramaniannii Hirsu2|3818 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|3818
MSVKFERETLKQTAQNVLANALPENGPIPGTSGKHPIAERVGTALTGGMKSAGTKGYLAAYIKQLESNPLRTKML
TAGSLAGAQELIASWLAKDRNKHGHYFTARVPKMAAYGALVSAPLGHFLIWLLQKFFHRRTSLRAKIMQIIVSNL
LIAPIQNSIYLVAMALIAGARTYHQVRATVKVGFWRVMRVSWVTSPICLAFAQKFLPDEMWVPFFNLVSFVIGTY
INTVTKKKRLAALRRKHFGDGRNNGMGRSEDYPPPTMGPNPAY*
Coding >Hirsu2|3818
ATGTCGGTTAAGTTCGAGCGCGAGACGCTCAAGCAGACAGCCCAGAACGTCCTGGCCAACGCCCTTCCCGAAAAT
GGCCCCATTCCCGGCACCAGTGGCAAGCATCCCATCGCCGAGAGGGTCGGTACCGCCCTCACCGGCGGCATGAAG
AGTGCTGGAACCAAGGGCTACCTAGCCGCATACATCAAGCAGCTTGAGTCCAATCCGCTGCGCACCAAGATGCTC
ACCGCTGGGTCCCTCGCCGGCGCTCAGGAGCTCATCGCCTCATGGCTGGCCAAGGACCGCAACAAGCATGGCCAC
TACTTCACCGCGCGCGTCCCCAAGATGGCCGCCTACGGCGCCCTCGTCAGCGCTCCCCTTGGCCACTTCCTCATC
TGGCTGCTGCAAAAGTTCTTCCATCGCCGCACCAGCCTCAGAGCCAAAATCATGCAAATTATCGTCAGCAACTTG
CTTATTGCACCCATCCAAAACAGCATCTACCTGGTTGCCATGGCTCTCATAGCCGGTGCCCGAACCTACCACCAG
GTCCGCGCGACCGTCAAGGTCGGGTTCTGGAGAGTTATGCGCGTCTCTTGGGTCACTTCGCCCATCTGCCTCGCC
TTTGCCCAGAAGTTCCTTCCCGACGAGATGTGGGTGCCTTTCTTCAACCTCGTCTCCTTCGTCATCGGTACCTAC
ATCAATACCGTCACCAAGAAGAAGCGCCTGGCCGCCCTGCGCAGGAAACACTTTGGCGACGGTCGCAACAACGGC
ATGGGTCGCTCCGAGGACTACCCTCCTCCAACCATGGGCCCCAACCCTGCCTACTGA
Transcript >Hirsu2|3818
ATGTCGGTTAAGTTCGAGCGCGAGACGCTCAAGCAGACAGCCCAGAACGTCCTGGCCAACGCCCTTCCCGAAAAT
GGCCCCATTCCCGGCACCAGTGGCAAGCATCCCATCGCCGAGAGGGTCGGTACCGCCCTCACCGGCGGCATGAAG
AGTGCTGGAACCAAGGGCTACCTAGCCGCATACATCAAGCAGCTTGAGTCCAATCCGCTGCGCACCAAGATGCTC
ACCGCTGGGTCCCTCGCCGGCGCTCAGGAGCTCATCGCCTCATGGCTGGCCAAGGACCGCAACAAGCATGGCCAC
TACTTCACCGCGCGCGTCCCCAAGATGGCCGCCTACGGCGCCCTCGTCAGCGCTCCCCTTGGCCACTTCCTCATC
TGGCTGCTGCAAAAGTTCTTCCATCGCCGCACCAGCCTCAGAGCCAAAATCATGCAAATTATCGTCAGCAACTTG
CTTATTGCACCCATCCAAAACAGCATCTACCTGGTTGCCATGGCTCTCATAGCCGGTGCCCGAACCTACCACCAG
GTCCGCGCGACCGTCAAGGTCGGGTTCTGGAGAGTTATGCGCGTCTCTTGGGTCACTTCGCCCATCTGCCTCGCC
TTTGCCCAGAAGTTCCTTCCCGACGAGATGTGGGTGCCTTTCTTCAACCTCGTCTCCTTCGTCATCGGTACCTAC
ATCAATACCGTCACCAAGAAGAAGCGCCTGGCCGCCCTGCGCAGGAAACACTTTGGCGACGGTCGCAACAACGGC
ATGGGTCGCTCCGAGGACTACCCTCCTCCAACCATGGGCCCCAACCCTGCCTACTGA
Gene >Hirsu2|3818
ATGTCGGTTAAGTTCGAGCGCGAGACGCTCAAGCAGACAGCCCAGAACGTCCTGGCCAACGCCCTTCCCGAAAAT
GGCCCCATTCCCGGCACCAGTGGCAAGCATCCCATCGCCGAGAGGGTCGGTACCGCCCTCACCGGCGGCATGAAG
AGTGCTGGAACCAAGGGCTACCTAGCCGTACGTCCTCTACCGCCCGGCCCTTCCCTTCTTCTCCTCCTGCTCGCT
GACGCTGTACCCCTTCCTCTTGTTAGGCATACATCAAGCAGCTTGAGTCCAATCCGCTGCGCACCAAGATGCTCA
CCGCTGGGTCCCTCGCCGGCGCTCAGGAGCTCATCGCCTCATGGCTGGCCAAGGACCGCAACAAGCATGGCCACT
ACTTCACCGCGCGCGTCCCCAAGATGGCCGCCTACGGCGCCCTCGTCAGCGCTCCCCTTGGCCACTTCCTCATCT
GGCTGCTGCAAAAGTTCTTCCATCGCCGCACCAGCCTCAGAGCCAAAATCATGCAAATTATCGTCAGCAACTTGC
TTGTAAGTTTCATCTTCCGACACTCATGCTCCTCGCCTCACGGCGCCTGACTTCTTCTCACACACCTTACTCACT
CTGTTCCCCTGTCTCGAACAGATTGCACCCATCCAAAACAGCATCTACCTGGTTGCCATGGCTCTCATAGCCGGT
GCCCGAACCTACCACCAGGTCCGCGCGACCGTCAAGGTCGGGTTCTGGAGAGTTATGCGCGTCTCTTGGGTCACT
TCGCCCATCTGCCTCGCCTTTGCCCAGAAGTTCCTTCCCGACGAGATGTGGGTGCCTTTCTTCAACCTCGTCTCC
TTCGTCATCGGTACCTACATCAATACCGTCACCAAGAAGAAGCGCCTGGCCGCCCTGCGCAGGAAACACTTTGGC
GACGGTCGCAACAACGGCATGGGTCGCTCCGAGGACTACCCTCCTCCAACCATGGGCCCCAACCCTGCCTACTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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